Wall clock time and date at job start Fri Apr 10 2020 18:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37010 * 125.65335 * 2 1 4 4 C 1.35145 * 107.87762 * 180.02562 * 3 2 1 5 5 C 1.46660 * 126.37538 * 179.97438 * 4 3 2 6 6 O 1.21705 * 119.99710 * 180.02562 * 5 4 3 7 7 N 1.34767 * 120.00112 * 0.02562 * 5 4 3 8 8 C 1.46510 * 119.99962 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.46595 * 324.99669 * 8 7 5 10 10 C 1.52992 * 109.46944 * 84.99807 * 8 7 5 11 11 C 1.53003 * 109.46798 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47226 * 299.99595 * 11 10 8 13 13 H 1.08998 * 109.47474 * 300.00645 * 12 11 10 14 14 N 1.46500 * 109.47487 * 179.97438 * 12 11 10 15 15 C 1.36935 * 119.99795 * 85.00076 * 14 12 11 16 16 H 1.08006 * 119.99956 * 0.02562 * 15 14 12 17 17 C 1.38809 * 120.00104 * 180.02562 * 15 14 12 18 18 N 1.31615 * 120.00002 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00116 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47261 * 239.99934 * 19 17 15 22 22 H 1.48500 * 109.47454 * 119.99927 * 19 17 15 23 23 C 1.53005 * 109.46769 * 60.00255 * 12 11 10 24 24 C 1.53002 * 109.46890 * 204.99884 * 8 7 5 25 25 N 1.39836 * 107.24252 * 0.24363 * 4 3 2 26 26 C 1.46504 * 126.17998 * 179.75730 * 25 4 3 27 27 C 1.34627 * 125.64871 * 180.02562 * 2 1 3 28 28 O 1.21723 * 125.73025 * 359.97088 * 27 2 1 29 29 H 1.09002 * 109.47066 * 89.99944 * 1 2 3 30 30 H 1.08994 * 109.47166 * 209.99246 * 1 2 3 31 31 H 1.08998 * 109.47004 * 329.99539 * 1 2 3 32 32 H 1.08003 * 126.06161 * 0.02562 * 3 2 1 33 33 H 0.96997 * 120.00727 * 0.02562 * 7 5 4 34 34 H 1.08994 * 109.47407 * 299.99933 * 10 8 7 35 35 H 1.09000 * 109.47587 * 60.00470 * 10 8 7 36 36 H 1.09002 * 109.47230 * 180.02562 * 11 10 8 37 37 H 1.08998 * 109.47420 * 60.00273 * 11 10 8 38 38 H 0.96997 * 120.00022 * 265.00550 * 14 12 11 39 39 H 0.97004 * 120.00335 * 0.02562 * 18 17 15 40 40 H 1.09003 * 109.46999 * 59.99538 * 23 12 11 41 41 H 1.08994 * 109.47275 * 180.02562 * 23 12 11 42 42 H 1.09006 * 109.47104 * 60.00388 * 24 8 7 43 43 H 1.08995 * 109.47063 * 299.99736 * 24 8 7 44 44 H 1.09002 * 109.47197 * 90.00007 * 26 25 4 45 45 H 1.08998 * 109.47207 * 210.00401 * 26 25 4 46 46 H 1.08997 * 109.47230 * 330.00423 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2636 1.1133 0.0000 4 6 3.5506 0.7007 -0.0006 5 6 4.7393 1.5596 -0.0013 6 8 5.8498 1.0616 -0.0023 7 7 4.6020 2.9003 -0.0009 8 6 5.7896 3.7583 -0.0022 9 1 6.5777 3.2886 0.5862 10 6 6.2749 3.9552 -1.4398 11 6 7.5154 4.8507 -1.4410 12 6 7.1645 6.2091 -0.8307 13 1 6.3765 6.6791 -1.4190 14 7 8.3525 7.0664 -0.8313 15 6 8.6695 7.7963 -1.9457 16 1 8.0434 7.7403 -2.8240 17 6 9.7953 8.6082 -1.9465 18 7 10.5585 8.6761 -0.8764 19 14 10.2273 9.6045 -3.4665 20 1 9.2177 9.3536 -4.5263 21 1 11.5699 9.2019 -3.9572 22 1 10.2381 11.0496 -3.1246 23 6 6.6792 6.0121 0.6069 24 6 5.4380 5.1166 0.6080 25 7 3.5376 -0.6976 -0.0066 26 6 4.7120 -1.5734 -0.0143 27 6 2.2496 -1.0940 -0.0005 28 8 1.8610 -2.2475 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5139 32 1 1.9248 2.1388 0.0004 33 1 3.7170 3.2973 0.0002 34 1 6.5253 2.9876 -1.8745 35 1 5.4867 4.4249 -2.0282 36 1 7.8610 4.9914 -2.4652 37 1 8.3035 4.3806 -0.8527 38 1 8.9146 7.1169 -0.0424 39 1 10.3345 8.1584 -0.0872 40 1 7.4672 5.5420 1.1953 41 1 6.4288 6.9797 1.0417 42 1 5.0923 4.9762 1.6322 43 1 4.6499 5.5862 0.0196 44 1 5.0066 -1.7951 1.0115 45 1 4.4695 -2.5017 -0.5314 46 1 5.5336 -1.0749 -0.5286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034798550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:02 Heat of formation + Delta-G solvation = -39.887933 kcal Electronic energy + Delta-G solvation = -27178.351207 eV Core-core repulsion = 23296.112605 eV Total energy + Delta-G solvation = -3882.238602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.54543 -40.96015 -39.30401 -38.02497 -36.75317 -36.25799 -34.89044 -32.61773 -31.70320 -31.39608 -29.51700 -28.20302 -27.08107 -25.56010 -24.44199 -23.60802 -22.65216 -21.71745 -21.51325 -20.89059 -19.40333 -18.97371 -17.90283 -17.70679 -17.36665 -16.94694 -16.37584 -16.12243 -15.98297 -15.90033 -15.49260 -15.33742 -15.12898 -15.06155 -14.83032 -14.60721 -14.00320 -13.99229 -13.52191 -13.43532 -13.24580 -13.09848 -12.98630 -12.73625 -12.60486 -12.34698 -12.18531 -12.02738 -11.85678 -11.82501 -11.48123 -11.46106 -11.13708 -11.01968 -10.96993 -10.81914 -10.10528 -9.07182 -8.92217 -8.35544 -5.28734 0.30900 1.08408 1.58983 1.63114 1.70491 1.79996 1.81686 2.18556 2.55934 2.73415 3.43017 3.54310 3.72584 3.76391 3.86274 3.94170 4.00371 4.16804 4.25398 4.30497 4.35872 4.36082 4.36782 4.51191 4.52232 4.58360 4.62557 4.66334 4.81000 4.82744 4.93509 4.96898 5.10877 5.14873 5.22460 5.23978 5.25871 5.44027 5.50988 5.59090 5.61710 5.66224 6.09999 6.53407 6.54898 7.02003 7.14669 7.19597 8.05446 8.16599 9.16841 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.002183 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.712312 B =12823.438336 C =13043.750195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.517 5.517 3 C 0.100 3.900 4 C -0.074 4.074 5 C 0.593 3.407 6 O -0.578 6.578 7 N -0.691 5.691 8 C 0.158 3.842 9 H 0.067 0.933 10 C -0.112 4.112 11 C -0.123 4.123 12 C 0.176 3.824 13 H 0.048 0.952 14 N -0.753 5.753 15 C -0.322 4.322 16 H 0.066 0.934 17 C -0.110 4.110 18 N -0.980 5.980 19 Si 1.130 2.870 20 H -0.270 1.270 21 H -0.295 1.295 22 H -0.290 1.290 23 C -0.115 4.115 24 C -0.104 4.104 25 N -0.519 5.519 26 C 0.101 3.899 27 C 0.629 3.371 28 O -0.611 6.611 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.249 0.751 33 H 0.421 0.579 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.357 0.643 39 H 0.244 0.756 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.441 -13.829 3.641 29.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.232 5.232 3 C -0.030 4.030 4 C -0.181 4.181 5 C 0.381 3.619 6 O -0.459 6.459 7 N -0.343 5.343 8 C 0.053 3.947 9 H 0.085 0.915 10 C -0.151 4.151 11 C -0.164 4.164 12 C 0.068 3.932 13 H 0.066 0.934 14 N -0.394 5.394 15 C -0.453 4.453 16 H 0.084 0.916 17 C -0.301 4.301 18 N -0.629 5.629 19 Si 0.955 3.045 20 H -0.195 1.195 21 H -0.223 1.223 22 H -0.217 1.217 23 C -0.154 4.154 24 C -0.142 4.142 25 N -0.239 5.239 26 C -0.040 4.040 27 C 0.331 3.669 28 O -0.493 6.493 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.148 0.852 32 H 0.265 0.735 33 H 0.260 0.740 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.189 0.811 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.052 -13.989 2.785 27.963 hybrid contribution -0.362 -1.288 0.859 1.590 sum -24.414 -15.277 3.644 29.030 Atomic orbital electron populations 1.22251 0.72000 1.06200 1.04959 1.45227 1.09395 1.05361 1.63175 1.22934 0.86097 0.94952 0.99011 1.19683 0.94875 0.83289 1.20301 1.16886 0.86540 0.82542 0.75961 1.90832 1.27825 1.74993 1.52201 1.45462 1.10906 1.03787 1.74171 1.20849 0.87210 0.90664 0.95943 0.91492 1.21768 0.97533 0.98666 0.97179 1.22012 0.97311 0.97119 0.99951 1.20468 0.88011 0.89005 0.95676 0.93414 1.42735 1.29464 1.52736 1.14479 1.20414 1.09591 1.21186 0.94139 0.91579 1.27133 0.94836 1.02083 1.06063 1.70926 1.41717 1.45726 1.04516 0.82581 0.75619 0.74708 0.71566 1.19530 1.22261 1.21742 1.21672 0.97977 1.00011 0.95742 1.21667 0.97616 0.92181 1.02777 1.45297 1.06966 1.06026 1.65569 1.21835 0.85140 0.93529 1.03530 1.16426 0.81359 0.85318 0.83794 1.90992 1.77330 1.18296 1.62650 0.89549 0.90594 0.85162 0.73464 0.74043 0.93295 0.90102 0.94553 0.94493 0.81102 0.94532 0.93010 0.91493 0.88717 0.88729 0.91087 0.89970 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 11.01 127.77 1.41 1.80 16 2 N -0.52 -6.57 3.12 -679.65 -2.12 -8.70 16 3 C 0.10 0.78 10.91 83.17 0.91 1.69 16 4 C -0.07 -1.24 6.88 39.35 0.27 -0.97 16 5 C 0.59 11.91 7.75 86.44 0.67 12.58 16 6 O -0.58 -17.04 14.49 -4.37 -0.06 -17.10 16 7 N -0.69 -9.50 5.06 -446.51 -2.26 -11.76 16 8 C 0.16 3.21 2.45 44.99 0.11 3.33 16 9 H 0.07 1.75 7.58 -2.39 -0.02 1.74 16 10 C -0.11 -2.85 5.49 30.59 0.17 -2.68 16 11 C -0.12 -4.31 5.50 30.60 0.17 -4.14 16 12 C 0.18 6.47 2.77 44.99 0.12 6.60 16 13 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 14 N -0.75 -37.19 5.12 -322.93 -1.65 -38.84 16 15 C -0.32 -17.86 9.93 84.03 0.83 -17.02 16 16 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 17 C -0.11 -6.41 5.50 84.86 0.47 -5.95 16 18 N -0.98 -61.68 13.70 21.65 0.30 -61.38 16 19 Si 1.13 52.19 29.92 68.60 2.05 54.24 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 21 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 23 C -0.12 -3.20 5.39 30.61 0.17 -3.03 16 24 C -0.10 -1.79 5.39 30.61 0.17 -1.62 16 25 N -0.52 -11.52 3.21 -667.05 -2.14 -13.66 16 26 C 0.10 2.17 10.57 127.77 1.35 3.53 16 27 C 0.63 14.60 8.49 179.11 1.52 16.13 16 28 O -0.61 -18.96 17.59 -4.42 -0.08 -19.04 16 29 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.08 0.61 8.04 -2.39 -0.02 0.59 16 31 H 0.13 -0.45 8.14 -2.39 -0.02 -0.47 16 32 H 0.25 -1.18 7.37 -2.91 -0.02 -1.20 16 33 H 0.42 1.80 7.45 -92.71 -0.69 1.11 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.36 18.64 6.63 -92.71 -0.61 18.03 16 39 H 0.24 15.30 6.78 -92.70 -0.63 14.67 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 46 H 0.09 2.13 6.45 -2.39 -0.02 2.12 16 Total: -1.00 -87.27 375.43 2.20 -85.07 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -0.16 Total: 20.93 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 8.33 Total: 10.24 kcal Atomic # 7 Polarization: -126.45 SS G_CDS: -7.88 Total: -134.34 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.14 Total: -36.14 kcal Atomic # 14 Polarization: 52.19 SS G_CDS: 2.05 Total: 54.24 kcal Total: -87.27 2.20 -85.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034798550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.186 kcal (2) G-P(sol) polarization free energy of solvation -87.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds