Wall clock time and date at job start Fri Apr 10 2020 18:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47050 * 125.40866 * 2 1 4 4 C 1.54106 * 103.85974 * 179.97438 * 3 2 1 5 5 H 1.09006 * 110.66894 * 118.65696 * 4 3 2 6 6 C 1.50695 * 110.55263 * 241.40559 * 4 3 2 7 7 O 1.21289 * 119.99453 * 95.89868 * 6 4 3 8 8 N 1.34772 * 120.00396 * 275.89718 * 6 4 3 9 9 C 1.46887 * 120.46348 * 179.97438 * 8 6 4 10 10 C 1.53355 * 108.74303 * 124.34811 * 9 8 6 11 11 C 1.52561 * 109.12739 * 52.25467 * 10 9 8 12 12 C 1.52967 * 114.05585 * 75.54491 * 11 10 9 13 13 N 1.47167 * 87.85254 * 139.44181 * 12 11 10 14 14 C 1.36931 * 136.00030 * 153.31333 * 13 12 11 15 15 H 1.07998 * 119.99948 * 352.26630 * 14 13 12 16 16 C 1.38814 * 119.99802 * 172.26321 * 14 13 12 17 17 N 1.31615 * 119.99935 * 184.93657 * 16 14 13 18 18 Si 1.86798 * 120.00097 * 4.94194 * 16 14 13 19 19 H 1.48502 * 109.47167 * 185.17767 * 18 16 14 20 20 H 1.48504 * 109.47513 * 65.17271 * 18 16 14 21 21 H 1.48506 * 109.46859 * 305.17778 * 18 16 14 22 22 C 1.47173 * 87.99573 * 333.57335 * 13 12 11 23 23 C 1.52545 * 113.43325 * 302.67586 * 11 10 9 24 24 C 1.46884 * 120.46035 * 359.97438 * 8 6 4 25 25 N 1.47054 * 103.86310 * 0.02562 * 4 3 2 26 26 C 1.33943 * 125.40443 * 180.02562 * 2 1 3 27 27 O 1.21589 * 123.04836 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.47143 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47129 * 300.02303 * 1 2 3 30 30 H 1.09003 * 109.47507 * 60.01976 * 1 2 3 31 31 H 1.09004 * 110.54697 * 61.41197 * 3 2 1 32 32 H 1.08997 * 110.55354 * 298.59792 * 3 2 1 33 33 H 1.08996 * 109.59502 * 4.57148 * 9 8 6 34 34 H 1.09004 * 109.71764 * 244.19185 * 9 8 6 35 35 H 1.09003 * 109.52620 * 292.36862 * 10 9 8 36 36 H 1.08994 * 109.53540 * 172.15895 * 10 9 8 37 37 H 1.09000 * 113.49085 * 24.69423 * 12 11 10 38 38 H 1.08992 * 113.54404 * 254.19481 * 12 11 10 39 39 H 0.97001 * 119.99721 * 5.11936 * 17 16 14 40 40 H 1.08998 * 113.49040 * 141.18166 * 22 13 12 41 41 H 1.09005 * 113.48555 * 271.68365 * 22 13 12 42 42 H 1.09004 * 109.52569 * 177.21292 * 23 11 10 43 43 H 1.09005 * 109.52969 * 297.42079 * 23 11 10 44 44 H 1.09006 * 109.59242 * 355.42498 * 24 8 6 45 45 H 1.08997 * 109.59509 * 115.71700 * 24 8 6 46 46 H 0.97004 * 125.41409 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6325 0.0007 5 1 4.2882 0.9459 -0.8942 6 6 4.4901 1.0666 1.2398 7 8 4.5379 0.3341 2.2053 8 7 5.0984 2.2687 1.2751 9 6 5.8217 2.7023 2.4778 10 6 7.2612 3.0572 2.0860 11 6 7.2339 4.0436 0.9225 12 6 6.8579 5.4710 1.3239 13 7 7.8950 5.9465 0.3943 14 6 8.1144 7.0814 -0.3398 15 1 7.3510 7.8431 -0.3976 16 6 9.3181 7.2527 -1.0098 17 7 9.5681 8.3836 -1.6348 18 14 10.5829 5.8782 -1.0242 19 1 11.8210 6.3518 -1.6935 20 1 10.0369 4.7107 -1.7619 21 1 10.8963 5.4792 0.3715 22 6 8.5895 4.6645 0.5949 23 6 6.4816 3.5219 -0.2977 24 6 5.0474 3.1636 0.1114 25 7 3.5537 -0.8248 0.0003 26 6 2.2410 -1.0917 -0.0005 27 8 1.7945 -2.2227 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5142 0.8898 30 1 -0.3634 0.5135 -0.8902 31 1 2.1407 1.7933 0.8963 32 1 2.1406 1.7935 -0.8961 33 1 5.8307 1.8948 3.2099 34 1 5.3329 3.5778 2.9052 35 1 7.7902 2.1530 1.7846 36 1 7.7691 3.5112 2.9368 37 1 7.0724 5.6995 2.3679 38 1 5.8476 5.7544 1.0293 39 1 8.9450 9.1239 -1.5659 40 1 9.0392 4.2670 -0.3149 41 1 9.2795 4.6716 1.4388 42 1 6.4589 4.2922 -1.0685 43 1 6.9833 2.6342 -0.6830 44 1 4.5464 2.6598 -0.7154 45 1 4.5016 4.0705 0.3713 46 1 4.2620 -1.4876 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035768496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:18 Heat of formation + Delta-G solvation = 29.599397 kcal Electronic energy + Delta-G solvation = -28355.389566 eV Core-core repulsion = 24476.164161 eV Total energy + Delta-G solvation = -3879.225405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.76321 -40.42115 -39.06495 -36.53551 -36.15735 -34.44356 -32.84251 -31.71053 -30.85805 -29.61985 -27.70197 -26.92895 -25.68461 -24.58540 -23.57191 -23.03987 -21.05017 -20.88165 -19.98166 -18.46513 -18.03695 -17.55848 -17.30387 -16.67301 -16.40033 -15.61991 -15.44732 -15.23277 -14.91944 -14.56409 -14.51653 -14.24639 -13.98031 -13.85361 -13.63882 -13.30304 -13.25084 -12.93670 -12.77501 -12.68147 -12.42479 -12.28487 -12.02234 -11.79319 -11.20728 -10.96202 -10.86099 -10.58738 -10.57549 -10.41631 -10.28360 -10.00589 -9.50457 -9.31522 -9.16925 -8.97304 -8.95776 -8.72047 -7.21562 -6.34547 -3.29220 2.04160 2.35849 2.54300 2.94749 3.34471 3.38957 3.49924 3.59368 3.85977 4.01062 4.34479 4.53949 4.55562 4.63860 4.65186 4.71309 4.88255 4.97129 5.02295 5.07027 5.15842 5.21462 5.29761 5.36282 5.43448 5.47847 5.53930 5.56466 5.70256 5.81348 5.94972 6.05376 6.15784 6.19599 6.23843 6.28708 6.32089 6.39386 6.46736 6.75615 6.83716 7.06461 7.08497 7.14626 7.83559 8.17794 8.28044 8.91784 9.44615 10.31738 11.15087 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024856 B = 0.002934 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.238886 B = 9541.257193 C = 9770.239923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.637 5.637 3 C 0.108 3.892 4 C 0.102 3.898 5 H 0.119 0.881 6 C 0.504 3.496 7 O -0.529 6.529 8 N -0.600 5.600 9 C 0.115 3.885 10 C -0.116 4.116 11 C -0.103 4.103 12 C 0.132 3.868 13 N -0.626 5.626 14 C -0.303 4.303 15 H 0.082 0.918 16 C -0.025 4.025 17 N -0.935 5.935 18 Si 1.070 2.930 19 H -0.296 1.296 20 H -0.293 1.293 21 H -0.288 1.288 22 C 0.104 3.896 23 C -0.102 4.102 24 C 0.104 3.896 25 N -0.715 5.715 26 C 0.706 3.294 27 O -0.584 6.584 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.042 0.958 39 H 0.261 0.739 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.516 -13.611 3.566 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.377 5.377 3 C -0.017 4.017 4 C -0.009 4.009 5 H 0.137 0.863 6 C 0.289 3.711 7 O -0.404 6.404 8 N -0.333 5.333 9 C -0.007 4.007 10 C -0.155 4.155 11 C -0.104 4.104 12 C 0.006 3.994 13 N -0.354 5.354 14 C -0.429 4.429 15 H 0.099 0.901 16 C -0.224 4.224 17 N -0.577 5.577 18 Si 0.903 3.097 19 H -0.223 1.223 20 H -0.221 1.221 21 H -0.215 1.215 22 C -0.021 4.021 23 C -0.140 4.140 24 C -0.018 4.018 25 N -0.376 5.376 26 C 0.406 3.594 27 O -0.462 6.462 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -13.402 -14.757 3.321 20.209 hybrid contribution -0.885 0.645 0.724 1.312 sum -14.286 -14.112 4.045 20.485 Atomic orbital electron populations 1.21438 0.75270 1.04120 1.01485 1.46990 1.06499 1.05534 1.78637 1.22259 0.86105 0.89106 1.04204 1.21924 0.97279 0.83320 0.98359 0.86343 1.20649 0.79724 0.81544 0.89223 1.90738 1.60542 1.52766 1.36394 1.48152 1.52140 1.16691 1.16364 1.21645 0.91981 1.00459 0.86608 1.21760 0.95719 0.99429 0.98576 1.21895 0.98845 0.94664 0.95016 1.22340 0.93877 0.89550 0.93683 1.45972 1.24942 1.15348 1.49154 1.20133 1.01817 0.95205 1.25781 0.90054 1.25700 0.97032 1.02109 0.97509 1.70917 1.38769 1.02913 1.45086 0.83713 0.76036 0.74107 0.75884 1.22315 1.22101 1.21473 1.22675 0.93694 0.86865 0.98869 1.21518 0.93286 1.01564 0.97664 1.21965 0.98758 0.94007 0.87102 1.44850 1.06985 1.06162 1.79629 1.15798 0.81674 0.84640 0.77278 1.90961 1.75803 1.20884 1.58509 0.89456 0.92004 0.91858 0.89550 0.88550 0.89174 0.91022 0.91553 0.90337 0.94656 0.93949 0.92934 0.92944 0.93809 0.88874 0.91665 0.89984 0.90276 0.72353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.81 11.21 59.85 0.67 1.48 16 2 N -0.64 -6.04 3.36 -186.73 -0.63 -6.66 16 3 C 0.11 0.74 7.16 -3.16 -0.02 0.72 16 4 C 0.10 0.83 3.16 -68.21 -0.22 0.62 16 5 H 0.12 0.68 6.54 -51.93 -0.34 0.34 16 6 C 0.50 5.44 6.79 -10.99 -0.07 5.36 16 7 O -0.53 -7.80 15.99 5.55 0.09 -7.71 16 8 N -0.60 -5.95 2.94 -172.61 -0.51 -6.46 16 9 C 0.12 1.22 6.34 -3.65 -0.02 1.20 16 10 C -0.12 -1.36 5.31 -26.77 -0.14 -1.51 16 11 C -0.10 -1.49 0.83 -155.16 -0.13 -1.62 16 12 C 0.13 2.26 7.63 -8.20 -0.06 2.20 16 13 N -0.63 -14.09 3.46 -184.82 -0.64 -14.73 16 14 C -0.30 -8.26 11.08 -15.06 -0.17 -8.42 16 15 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 16 C -0.02 -0.71 5.50 -17.43 -0.10 -0.80 16 17 N -0.93 -28.70 13.70 55.49 0.76 -27.94 16 18 Si 1.07 25.85 25.19 -169.99 -4.28 21.57 16 19 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.29 -6.59 6.44 56.52 0.36 -6.22 16 21 H -0.29 -6.53 6.22 56.52 0.35 -6.18 16 22 C 0.10 2.01 4.81 -8.35 -0.04 1.97 16 23 C -0.10 -1.26 5.26 -26.76 -0.14 -1.40 16 24 C 0.10 0.91 6.20 -3.63 -0.02 0.89 16 25 N -0.71 -7.47 5.63 -59.33 -0.33 -7.81 16 26 C 0.71 8.95 8.60 -88.39 -0.76 8.19 16 27 O -0.58 -9.63 17.29 5.29 0.09 -9.54 16 28 H 0.09 0.70 7.52 -51.93 -0.39 0.31 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.58 7.72 -51.93 -0.40 0.18 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 1.03 6.97 -51.93 -0.36 0.67 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 38 H 0.04 0.69 7.54 -51.93 -0.39 0.30 16 39 H 0.26 7.90 8.73 -40.82 -0.36 7.54 16 40 H 0.05 1.06 4.79 -51.93 -0.25 0.81 16 41 H 0.04 0.85 7.54 -51.93 -0.39 0.46 16 42 H 0.09 1.37 7.95 -51.93 -0.41 0.96 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 0.48 5.39 -51.93 -0.28 0.20 16 45 H 0.08 0.68 7.61 -51.93 -0.40 0.28 16 46 H 0.43 4.19 8.96 -40.82 -0.37 3.83 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -36.87 357.56 -8.30 -45.18 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.02 Total: -0.15 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -1.23 Total: 8.87 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -1.35 Total: -63.61 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.18 Total: -17.25 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -4.28 Total: 21.57 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.87 -8.30 -45.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035768496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.777 kcal (2) G-P(sol) polarization free energy of solvation -36.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds