Wall clock time and date at job start Fri Apr 10 2020 18:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47141 * 2 1 4 4 H 1.09003 * 109.52703 * 305.08692 * 3 2 1 5 5 C 1.53628 * 109.42648 * 65.28992 * 3 2 1 6 6 N 1.46929 * 108.54136 * 174.72595 * 5 3 2 7 7 C 1.34777 * 120.63092 * 126.37246 * 6 5 3 8 8 O 1.21283 * 119.99750 * 359.71529 * 7 6 5 9 9 C 1.50702 * 119.99928 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47159 * 179.72352 * 9 7 6 11 11 N 1.46493 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.34597 * 126.44435 * 124.71096 * 11 10 9 13 13 N 1.31072 * 106.68420 * 179.87924 * 12 11 10 14 14 N 1.28841 * 107.98674 * 0.38133 * 13 12 11 15 15 N 1.28745 * 109.40151 * 359.75798 * 14 13 12 16 16 C 1.46923 * 118.73574 * 306.09133 * 6 5 3 17 17 C 1.53192 * 108.77564 * 53.86561 * 16 6 5 18 18 C 1.53036 * 109.49910 * 185.00058 * 3 2 1 19 19 H 1.09005 * 109.45879 * 298.70730 * 18 3 2 20 20 N 1.46496 * 109.45970 * 58.66748 * 18 3 2 21 21 C 1.36941 * 120.00053 * 205.06720 * 20 18 3 22 22 H 1.07994 * 119.99646 * 0.02562 * 21 20 18 23 23 C 1.38806 * 120.00051 * 180.02562 * 21 20 18 24 24 N 1.31629 * 120.00067 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00095 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47365 * 89.99983 * 25 23 21 27 27 H 1.48501 * 109.47542 * 209.99941 * 25 23 21 28 28 H 1.48501 * 109.47112 * 329.99923 * 25 23 21 29 29 H 1.08997 * 109.47264 * 59.99343 * 1 2 3 30 30 H 1.08999 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47207 * 299.99494 * 1 2 3 32 32 H 1.09000 * 109.47274 * 240.00958 * 2 1 3 33 33 H 1.08995 * 109.47820 * 120.00150 * 2 1 3 34 34 H 1.09007 * 109.73889 * 54.98807 * 5 3 2 35 35 H 1.08999 * 109.66465 * 294.41950 * 5 3 2 36 36 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 37 37 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 38 38 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 39 39 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 40 40 H 1.07997 * 126.65708 * 0.02562 * 12 11 10 41 41 H 1.09003 * 109.58523 * 173.64973 * 16 6 5 42 42 H 1.08998 * 109.59507 * 293.92944 * 16 6 5 43 43 H 1.08998 * 109.49840 * 65.31182 * 17 16 6 44 44 H 1.09001 * 109.49830 * 185.37680 * 17 16 6 45 45 H 0.96998 * 120.00352 * 25.06551 * 20 18 3 46 46 H 0.97004 * 119.99603 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9829 -0.8407 5 6 1.6393 2.1262 1.3162 6 7 2.2450 3.4644 1.3508 7 6 1.4857 4.5564 1.5684 8 8 0.2896 4.4404 1.7328 9 6 2.1219 5.9221 1.6017 10 6 1.0462 6.9798 1.8567 11 7 1.6645 8.3075 1.8884 12 6 1.3217 9.3674 1.1329 13 7 2.1191 10.3489 1.4778 14 7 2.9156 9.9121 2.3914 15 7 2.6438 8.6789 2.6419 16 6 3.6951 3.5888 1.1500 17 6 4.0735 2.8883 -0.1587 18 6 3.5652 1.4451 -0.1257 19 1 4.0008 0.9261 0.7281 20 7 3.9541 0.7623 -1.3621 21 6 5.1917 0.1853 -1.4654 22 1 5.8809 0.2334 -0.6353 23 6 5.5604 -0.4612 -2.6371 24 7 4.7203 -0.5202 -3.6486 25 14 7.2484 -1.2488 -2.7778 26 1 7.1771 -2.6582 -2.3157 27 1 7.6944 -1.2142 -4.1938 28 1 8.2157 -0.5001 -1.9358 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.0008 1.5394 2.1607 35 1 0.5542 2.2148 1.3679 36 1 2.8633 5.9582 2.4000 37 1 2.6070 6.1203 0.6460 38 1 0.3048 6.9437 1.0584 39 1 0.5610 6.7815 2.8123 40 1 0.5398 9.4030 0.3889 41 1 3.9669 4.6428 1.0921 42 1 4.2209 3.1212 1.9825 43 1 3.6191 3.4150 -0.9979 44 1 5.1576 2.8901 -0.2721 45 1 3.3350 0.7187 -2.1075 46 1 4.9779 -0.9724 -4.4673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037950583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:29 Heat of formation + Delta-G solvation = 87.476772 kcal Electronic energy + Delta-G solvation = -27487.715483 eV Core-core repulsion = 23643.292580 eV Total energy + Delta-G solvation = -3844.422903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.47783 -40.47541 -38.15976 -36.35648 -34.93570 -33.89799 -32.83173 -31.93982 -31.79674 -29.63661 -28.88196 -26.48712 -24.83170 -24.13303 -23.96167 -23.04881 -22.45408 -20.95192 -19.96187 -19.13472 -18.36560 -17.38343 -17.20406 -16.87429 -16.17247 -16.10042 -15.94317 -15.02285 -14.58403 -14.20376 -14.14978 -13.84108 -13.64622 -13.42275 -13.23306 -13.13204 -13.09255 -12.71350 -12.48870 -12.21950 -11.99958 -11.88596 -11.73831 -11.48247 -11.40752 -11.20830 -11.01462 -10.93226 -10.80689 -10.65742 -10.48011 -10.29988 -10.23861 -10.04651 -9.80783 -9.70371 -8.98993 -8.68565 -7.05643 -5.85692 -3.14935 0.91768 1.57425 1.95215 2.34553 2.85075 3.36871 3.42551 3.44126 3.78027 3.89324 4.09060 4.22196 4.41623 4.50249 4.67993 4.87396 4.93296 5.08458 5.09663 5.13041 5.17659 5.22222 5.32890 5.39104 5.45262 5.51029 5.56190 5.57078 5.75724 5.78924 5.88387 6.00043 6.03901 6.19204 6.22616 6.27237 6.35013 6.40980 6.55062 6.71368 6.84960 6.93392 7.25445 7.60993 7.89830 8.28740 8.32366 9.44102 10.00342 10.34929 11.36548 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.002805 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.507367 B = 9980.453231 C =11319.590542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.070 0.930 5 C 0.118 3.882 6 N -0.599 5.599 7 C 0.522 3.478 8 O -0.551 6.551 9 C -0.158 4.158 10 C 0.131 3.869 11 N -0.308 5.308 12 C 0.162 3.838 13 N -0.309 5.309 14 N -0.077 5.077 15 N -0.092 5.092 16 C 0.103 3.897 17 C -0.152 4.152 18 C 0.183 3.817 19 H 0.048 0.952 20 N -0.720 5.720 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.235 0.765 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.860 11.895 10.491 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.331 5.331 7 C 0.309 3.691 8 O -0.430 6.430 9 C -0.198 4.198 10 C 0.010 3.990 11 N -0.110 5.110 12 C -0.136 4.136 13 N -0.158 5.158 14 N -0.071 5.071 15 N -0.079 5.079 16 C -0.020 4.020 17 C -0.194 4.194 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.360 5.360 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.142 0.858 39 H 0.134 0.866 40 H 0.251 0.749 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.218 0.782 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.249 12.326 11.318 19.119 hybrid contribution 0.158 -1.029 -1.062 1.488 sum -9.091 11.296 10.255 17.760 Atomic orbital electron populations 1.21842 0.96765 1.01127 1.01245 1.21457 0.94400 0.95629 1.03571 1.21863 0.97669 0.96348 0.96471 0.91170 1.21912 0.99469 0.81018 0.98025 1.48150 1.08802 1.06805 1.69336 1.20004 0.86754 0.85582 0.76736 1.90712 1.14580 1.86683 1.51044 1.21938 0.99463 0.92187 1.06258 1.22021 0.94944 0.74680 1.07359 1.48838 1.23285 1.13651 1.25245 1.27795 1.02839 0.83171 0.99823 1.75022 1.05044 1.25203 1.10489 1.78664 1.17807 1.00747 1.09919 1.78886 1.03652 1.10156 1.15158 1.21958 0.79067 1.01288 0.99667 1.22703 1.02441 0.99395 0.94815 1.20184 0.90753 0.90470 0.91335 0.93363 1.42402 1.16547 1.64417 1.12635 1.19197 0.91813 1.27551 0.98592 0.91229 1.24731 0.98170 1.01433 0.96402 1.69660 1.35283 1.48236 1.04742 0.86229 0.83953 0.79357 0.76856 1.21718 1.21814 1.20775 0.92998 0.93114 0.93242 0.89724 0.92408 0.91394 0.88951 0.86893 0.87629 0.85815 0.86615 0.74851 0.90523 0.91022 0.92187 0.90379 0.78192 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.68 37.16 0.36 -1.56 16 2 C -0.11 -1.67 5.31 -26.73 -0.14 -1.81 16 3 C -0.10 -1.52 1.94 -90.27 -0.17 -1.69 16 4 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 5 C 0.12 1.47 5.35 -3.48 -0.02 1.45 16 6 N -0.60 -6.85 2.97 -172.50 -0.51 -7.36 16 7 C 0.52 5.55 7.70 -10.98 -0.08 5.46 16 8 O -0.55 -7.21 15.39 5.55 0.09 -7.13 16 9 C -0.16 -1.15 4.19 -27.88 -0.12 -1.27 16 10 C 0.13 0.79 5.77 -4.05 -0.02 0.76 16 11 N -0.31 -2.43 3.44 -62.56 -0.22 -2.65 16 12 C 0.16 1.16 12.79 -90.39 -1.16 0.00 16 13 N -0.31 -3.47 12.36 29.59 0.37 -3.11 16 14 N -0.08 -0.99 13.43 60.35 0.81 -0.18 16 15 N -0.09 -1.02 13.07 60.35 0.79 -0.23 16 16 C 0.10 1.12 6.34 -3.71 -0.02 1.10 16 17 C -0.15 -2.26 5.66 -26.61 -0.15 -2.41 16 18 C 0.18 3.14 2.19 -67.89 -0.15 3.00 16 19 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 20 N -0.72 -16.23 4.33 -53.39 -0.23 -16.46 16 21 C -0.24 -6.16 9.93 -15.06 -0.15 -6.31 16 22 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -26.80 13.06 55.49 0.72 -26.08 16 25 Si 0.90 21.45 29.55 -169.99 -5.02 16.43 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.56 6.70 -51.93 -0.35 0.22 16 32 H 0.08 1.54 7.22 -51.93 -0.37 1.16 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.19 5.73 -51.93 -0.30 0.89 16 36 H 0.11 0.79 7.94 -51.93 -0.41 0.38 16 37 H 0.11 0.72 7.69 -51.93 -0.40 0.32 16 38 H 0.12 0.51 8.04 -51.93 -0.42 0.09 16 39 H 0.12 0.69 8.10 -51.93 -0.42 0.26 16 40 H 0.24 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.08 0.67 5.93 -51.93 -0.31 0.36 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.38 9.43 7.51 -40.82 -0.31 9.12 16 46 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -32.46 373.54 -6.56 -39.02 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.05 Total: 5.80 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -1.92 Total: -3.68 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 1.73 Total: -56.07 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.09 Total: -7.13 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.46 -6.56 -39.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037950583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.494 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds