Wall clock time and date at job start Fri Apr 10 2020 18:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47141 * 2 1 4 4 H 1.09003 * 109.52703 * 305.08692 * 3 2 1 5 5 C 1.53628 * 109.42648 * 65.28992 * 3 2 1 6 6 N 1.46929 * 108.54136 * 174.72595 * 5 3 2 7 7 C 1.34777 * 120.63092 * 126.37246 * 6 5 3 8 8 O 1.21283 * 119.99750 * 359.71529 * 7 6 5 9 9 C 1.50702 * 119.99928 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47159 * 179.72352 * 9 7 6 11 11 N 1.46493 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.34597 * 126.44435 * 124.71096 * 11 10 9 13 13 N 1.31072 * 106.68420 * 179.87924 * 12 11 10 14 14 N 1.28841 * 107.98674 * 0.38133 * 13 12 11 15 15 N 1.28745 * 109.40151 * 359.75798 * 14 13 12 16 16 C 1.46923 * 118.73574 * 306.09133 * 6 5 3 17 17 C 1.53192 * 108.77564 * 53.86561 * 16 6 5 18 18 C 1.53036 * 109.49910 * 185.00058 * 3 2 1 19 19 H 1.09005 * 109.45879 * 298.70730 * 18 3 2 20 20 N 1.46496 * 109.45970 * 58.66748 * 18 3 2 21 21 C 1.36941 * 120.00053 * 205.06720 * 20 18 3 22 22 H 1.07994 * 119.99646 * 0.02562 * 21 20 18 23 23 C 1.38806 * 120.00051 * 180.02562 * 21 20 18 24 24 N 1.31629 * 120.00067 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00095 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47365 * 89.99983 * 25 23 21 27 27 H 1.48501 * 109.47542 * 209.99941 * 25 23 21 28 28 H 1.48501 * 109.47112 * 329.99923 * 25 23 21 29 29 H 1.08997 * 109.47264 * 59.99343 * 1 2 3 30 30 H 1.08999 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47207 * 299.99494 * 1 2 3 32 32 H 1.09000 * 109.47274 * 240.00958 * 2 1 3 33 33 H 1.08995 * 109.47820 * 120.00150 * 2 1 3 34 34 H 1.09007 * 109.73889 * 54.98807 * 5 3 2 35 35 H 1.08999 * 109.66465 * 294.41950 * 5 3 2 36 36 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 37 37 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 38 38 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 39 39 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 40 40 H 1.07997 * 126.65708 * 0.02562 * 12 11 10 41 41 H 1.09003 * 109.58523 * 173.64973 * 16 6 5 42 42 H 1.08998 * 109.59507 * 293.92944 * 16 6 5 43 43 H 1.08998 * 109.49840 * 65.31182 * 17 16 6 44 44 H 1.09001 * 109.49830 * 185.37680 * 17 16 6 45 45 H 0.96998 * 120.00352 * 25.06551 * 20 18 3 46 46 H 0.97004 * 119.99603 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9829 -0.8407 5 6 1.6393 2.1262 1.3162 6 7 2.2450 3.4644 1.3508 7 6 1.4857 4.5564 1.5684 8 8 0.2896 4.4404 1.7328 9 6 2.1219 5.9221 1.6017 10 6 1.0462 6.9798 1.8567 11 7 1.6645 8.3075 1.8884 12 6 1.3217 9.3674 1.1329 13 7 2.1191 10.3489 1.4778 14 7 2.9156 9.9121 2.3914 15 7 2.6438 8.6789 2.6419 16 6 3.6951 3.5888 1.1500 17 6 4.0735 2.8883 -0.1587 18 6 3.5652 1.4451 -0.1257 19 1 4.0008 0.9261 0.7281 20 7 3.9541 0.7623 -1.3621 21 6 5.1917 0.1853 -1.4654 22 1 5.8809 0.2334 -0.6353 23 6 5.5604 -0.4612 -2.6371 24 7 4.7203 -0.5202 -3.6486 25 14 7.2484 -1.2488 -2.7778 26 1 7.1771 -2.6582 -2.3157 27 1 7.6944 -1.2142 -4.1938 28 1 8.2157 -0.5001 -1.9358 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.0008 1.5394 2.1607 35 1 0.5542 2.2148 1.3679 36 1 2.8633 5.9582 2.4000 37 1 2.6070 6.1203 0.6460 38 1 0.3048 6.9437 1.0584 39 1 0.5610 6.7815 2.8123 40 1 0.5398 9.4030 0.3889 41 1 3.9669 4.6428 1.0921 42 1 4.2209 3.1212 1.9825 43 1 3.6191 3.4150 -0.9979 44 1 5.1576 2.8901 -0.2721 45 1 3.3350 0.7187 -2.1075 46 1 4.9779 -0.9724 -4.4673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037950583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:28 Heat of formation + Delta-G solvation = 66.641780 kcal Electronic energy + Delta-G solvation = -27488.618956 eV Core-core repulsion = 23643.292580 eV Total energy + Delta-G solvation = -3845.326376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.16075 -41.41811 -39.28705 -37.03945 -36.20993 -35.32762 -33.52946 -33.45429 -32.58456 -31.07943 -30.03107 -27.42033 -26.16230 -25.08112 -24.79693 -24.39006 -23.25222 -22.19710 -21.16329 -20.09318 -19.14258 -18.95437 -18.06106 -17.68502 -17.01960 -16.86852 -16.77343 -16.57851 -15.65530 -15.57154 -15.29395 -15.07097 -14.73846 -14.58159 -14.45118 -14.13346 -13.92003 -13.61451 -13.57035 -13.19707 -13.13804 -12.97915 -12.84231 -12.66439 -12.55755 -12.47941 -12.19738 -12.16047 -12.07903 -11.84858 -11.81467 -11.57444 -11.50452 -11.34443 -11.08403 -10.99911 -10.77853 -9.68461 -8.95503 -7.91611 -5.18511 0.28598 1.01663 1.24179 1.48407 1.48669 1.51939 1.56628 1.99792 2.57515 3.24263 3.36466 3.42432 3.54170 3.58307 3.78409 3.81774 3.88393 4.01704 4.06726 4.20714 4.28820 4.34918 4.36075 4.44809 4.47645 4.48652 4.64614 4.66208 4.75622 4.80155 4.82929 4.84445 4.90286 5.02764 5.06541 5.17602 5.25740 5.30947 5.38114 5.47704 5.51934 5.58833 5.66757 6.30228 6.36796 7.04190 7.37172 7.57749 8.14104 8.36096 9.31769 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.002805 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.507367 B = 9980.453231 C =11319.590542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.091 4.091 4 H 0.055 0.945 5 C 0.126 3.874 6 N -0.605 5.605 7 C 0.525 3.475 8 O -0.573 6.573 9 C -0.151 4.151 10 C 0.132 3.868 11 N -0.303 5.303 12 C 0.182 3.818 13 N -0.346 5.346 14 N -0.113 5.113 15 N -0.109 5.109 16 C 0.114 3.886 17 C -0.144 4.144 18 C 0.177 3.823 19 H 0.045 0.955 20 N -0.731 5.731 21 C -0.228 4.228 22 H 0.076 0.924 23 C -0.076 4.076 24 N -0.970 5.970 25 Si 0.964 3.036 26 H -0.291 1.291 27 H -0.301 1.301 28 H -0.269 1.269 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.149 0.851 39 H 0.119 0.881 40 H 0.285 0.715 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.048 0.952 44 H 0.063 0.937 45 H 0.371 0.629 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.580 12.976 11.961 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.111 4.111 4 H 0.074 0.926 5 C 0.003 3.997 6 N -0.336 5.336 7 C 0.314 3.686 8 O -0.454 6.454 9 C -0.191 4.191 10 C 0.012 3.988 11 N -0.105 5.105 12 C -0.116 4.116 13 N -0.194 5.194 14 N -0.107 5.107 15 N -0.096 5.096 16 C -0.009 4.009 17 C -0.185 4.185 18 C 0.069 3.931 19 H 0.063 0.937 20 N -0.370 5.370 21 C -0.360 4.360 22 H 0.094 0.906 23 C -0.268 4.268 24 N -0.621 5.621 25 Si 0.794 3.206 26 H -0.218 1.218 27 H -0.228 1.228 28 H -0.194 1.194 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.167 0.833 39 H 0.137 0.863 40 H 0.300 0.700 41 H 0.124 0.876 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.202 0.798 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.962 13.439 12.852 21.095 hybrid contribution 0.282 -1.377 -1.480 2.041 sum -9.680 12.062 11.372 19.197 Atomic orbital electron populations 1.21770 0.94739 1.01844 1.01854 1.21365 0.96173 0.95419 1.01759 1.21699 0.95520 0.96370 0.97547 0.92619 1.21745 0.99605 0.81748 0.96591 1.48182 1.09018 1.06710 1.69684 1.20445 0.86342 0.86242 0.75562 1.90708 1.15683 1.87096 1.51899 1.21891 0.99809 0.90362 1.07059 1.22186 0.94641 0.73352 1.08593 1.48944 1.22563 1.14323 1.24662 1.28677 1.02159 0.81707 0.99075 1.74946 1.06237 1.27054 1.11153 1.78643 1.19229 1.01620 1.11246 1.78808 1.04861 1.09835 1.16067 1.21901 0.78875 1.02665 0.97476 1.22477 1.01236 0.97745 0.96999 1.20443 0.92623 0.91309 0.88773 0.93704 1.42584 1.15429 1.64988 1.13988 1.19566 0.92667 1.25634 0.98155 0.90582 1.25442 1.01403 1.03283 0.96640 1.69812 1.37002 1.50144 1.05142 0.85270 0.80649 0.78419 0.76230 1.21839 1.22803 1.19366 0.93463 0.92416 0.91453 0.93741 0.91916 0.90256 0.88861 0.86241 0.86626 0.83296 0.86324 0.70007 0.87589 0.89705 0.93288 0.91830 0.79761 0.94320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.68 71.98 0.70 -2.80 16 2 C -0.11 -3.23 5.31 30.60 0.16 -3.07 16 3 C -0.09 -2.62 1.94 -10.57 -0.02 -2.64 16 4 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 5 C 0.13 2.87 5.35 86.51 0.46 3.33 16 6 N -0.60 -12.13 2.97 -818.05 -2.43 -14.56 16 7 C 0.53 9.50 7.70 87.66 0.67 10.17 16 8 O -0.57 -13.31 15.39 -3.04 -0.05 -13.35 16 9 C -0.15 -1.67 4.19 29.85 0.12 -1.55 16 10 C 0.13 1.11 5.77 86.38 0.50 1.61 16 11 N -0.30 -3.90 3.44 -351.84 -1.21 -5.12 16 12 C 0.18 2.03 12.79 180.27 2.31 4.34 16 13 N -0.35 -7.25 12.36 -60.30 -0.75 -8.00 16 14 N -0.11 -2.83 13.43 37.01 0.50 -2.33 16 15 N -0.11 -2.23 13.07 37.02 0.48 -1.75 16 16 C 0.11 2.15 6.34 86.36 0.55 2.69 16 17 C -0.14 -4.09 5.66 30.67 0.17 -3.92 16 18 C 0.18 6.02 2.19 45.02 0.10 6.12 16 19 H 0.04 1.56 8.08 -2.38 -0.02 1.54 16 20 N -0.73 -33.65 4.33 -322.82 -1.40 -35.05 16 21 C -0.23 -11.80 9.93 84.03 0.83 -10.97 16 22 H 0.08 3.77 7.83 -2.91 -0.02 3.74 16 23 C -0.08 -4.16 5.50 84.86 0.47 -3.69 16 24 N -0.97 -57.57 13.06 21.65 0.28 -57.28 16 25 Si 0.96 44.69 29.55 68.60 2.03 46.72 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 28 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.39 6.70 -2.38 -0.02 1.38 16 32 H 0.04 1.68 7.22 -2.39 -0.02 1.66 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.09 2.18 5.73 -2.39 -0.01 2.16 16 36 H 0.12 1.25 7.94 -2.38 -0.02 1.23 16 37 H 0.12 1.13 7.69 -2.39 -0.02 1.11 16 38 H 0.15 0.55 8.04 -2.38 -0.02 0.53 16 39 H 0.12 1.01 8.10 -2.39 -0.02 0.99 16 40 H 0.28 -0.25 8.06 -2.91 -0.02 -0.28 16 41 H 0.11 1.44 5.93 -2.39 -0.01 1.43 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.37 18.92 7.51 -92.71 -0.70 18.22 16 46 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -73.28 373.54 4.79 -68.50 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.30 Total: 22.61 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 7.03 Total: -0.39 kcal Atomic # 7 Polarization: -119.57 SS G_CDS: -4.52 Total: -124.08 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.05 Total: -13.35 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -73.28 4.79 -68.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037950583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.139 kcal (2) G-P(sol) polarization free energy of solvation -73.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds