Wall clock time and date at job start Fri Apr 10 2020 18:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47393 * 125.37574 * 2 1 4 4 C 1.54098 * 103.70052 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.54914 * 118.77402 * 4 3 2 6 6 C 1.50709 * 110.54922 * 241.44381 * 4 3 2 7 7 O 1.21278 * 119.99998 * 98.00001 * 6 4 3 8 8 N 1.34777 * 119.99671 * 278.00341 * 6 4 3 9 9 C 1.46946 * 120.44104 * 180.02562 * 8 6 4 10 10 C 1.53591 * 108.54889 * 125.73997 * 9 8 6 11 11 H 1.08995 * 110.59932 * 172.12781 * 10 9 8 12 12 C 1.53373 * 108.68759 * 294.32762 * 10 9 8 13 13 C 1.53010 * 109.25450 * 60.26885 * 12 10 9 14 14 C 1.53009 * 109.79945 * 60.57382 * 13 12 10 15 15 C 1.53367 * 109.27267 * 299.43402 * 14 13 12 16 16 H 1.08995 * 111.08276 * 177.79655 * 15 14 13 17 17 C 1.46943 * 120.44465 * 359.97161 * 8 6 4 18 18 N 1.47570 * 107.76571 * 51.11279 * 10 9 8 19 19 C 1.36928 * 121.61040 * 120.52609 * 18 10 9 20 20 H 1.08006 * 120.00196 * 207.50192 * 19 18 10 21 21 C 1.38814 * 120.00417 * 27.49919 * 19 18 10 22 22 N 1.31621 * 119.99524 * 18.62236 * 21 19 18 23 23 Si 1.86800 * 120.00370 * 198.62493 * 21 19 18 24 24 H 1.48499 * 109.47058 * 90.00230 * 23 21 19 25 25 H 1.48499 * 109.47066 * 209.99816 * 23 21 19 26 26 H 1.48493 * 109.47008 * 329.99772 * 23 21 19 27 27 N 1.47053 * 103.99449 * 0.10627 * 4 3 2 28 28 C 1.33941 * 125.41257 * 180.08718 * 2 1 3 29 29 O 1.21596 * 123.04259 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.46616 * 179.88217 * 1 2 3 31 31 H 1.08998 * 109.47194 * 299.88554 * 1 2 3 32 32 H 1.09000 * 109.47111 * 59.88707 * 1 2 3 33 33 H 1.09001 * 110.59362 * 61.43618 * 3 2 1 34 34 H 1.09000 * 110.65432 * 298.52057 * 3 2 1 35 35 H 1.09006 * 109.62048 * 6.02101 * 9 8 6 36 36 H 1.09000 * 109.62263 * 245.46102 * 9 8 6 37 37 H 1.08996 * 109.50519 * 180.20351 * 12 10 9 38 38 H 1.08998 * 109.50601 * 300.33496 * 12 10 9 39 39 H 1.09007 * 109.41535 * 300.47327 * 13 12 10 40 40 H 1.09004 * 109.41623 * 180.67861 * 13 12 10 41 41 H 1.09002 * 109.50626 * 179.49254 * 14 13 12 42 42 H 1.08997 * 109.53289 * 59.39395 * 14 13 12 43 43 H 1.09000 * 109.62740 * 114.55927 * 17 8 6 44 44 H 1.09002 * 109.78863 * 354.08161 * 17 8 6 45 45 H 0.97007 * 120.00100 * 179.97438 * 22 21 19 46 46 H 0.96997 * 125.41775 * 179.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3184 1.2018 0.0000 4 6 3.7504 0.6327 0.0007 5 1 4.2877 0.9477 -0.8938 6 6 4.4907 1.0645 1.2403 7 8 4.5691 0.3160 2.1914 8 7 5.0655 2.2824 1.2920 9 6 5.7901 2.7132 2.4956 10 6 7.2046 3.1485 2.0847 11 1 7.7254 3.6042 2.9268 12 6 7.9644 1.9220 1.5643 13 6 7.2274 1.3488 0.3521 14 6 7.1601 2.3995 -0.7581 15 6 6.3975 3.6280 -0.2469 16 1 6.3655 4.4122 -1.0032 17 6 4.9769 3.1968 0.1451 18 7 7.0747 4.1097 0.9725 19 6 7.5595 5.3868 1.0673 20 1 7.1048 6.1810 0.4938 21 6 8.6354 5.6607 1.9006 22 7 9.4168 4.6835 2.3092 23 14 8.9743 7.4161 2.4420 24 1 8.2447 7.6941 3.7052 25 1 10.4320 7.5932 2.6632 26 1 8.5157 8.3564 1.3882 27 7 3.5538 -0.8247 -0.0017 28 6 2.2412 -1.0916 -0.0017 29 8 1.7946 -2.2226 -0.0038 30 1 -0.3632 -1.0277 -0.0021 31 1 -0.3633 0.5120 0.8910 32 1 -0.3633 0.5156 -0.8890 33 1 2.1425 1.7969 0.8962 34 1 2.1439 1.7972 -0.8962 35 1 5.8525 1.8849 3.2014 36 1 5.2684 3.5520 2.9564 37 1 8.9726 2.2156 1.2719 38 1 8.0175 1.1670 2.3486 39 1 6.2163 1.0646 0.6439 40 1 7.7587 0.4696 -0.0126 41 1 6.6423 1.9832 -1.6223 42 1 8.1702 2.6916 -1.0451 43 1 4.3913 4.0739 0.4205 44 1 4.5033 2.6896 -0.6955 45 1 10.1689 4.8749 2.8912 46 1 4.2621 -1.4874 -0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039826781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:40 Heat of formation + Delta-G solvation = 17.462660 kcal Electronic energy + Delta-G solvation = -29825.516203 eV Core-core repulsion = 25945.764509 eV Total energy + Delta-G solvation = -3879.751694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65788 -40.25950 -37.86322 -36.24549 -34.22432 -34.18592 -32.83581 -32.03078 -30.64996 -29.50021 -27.59760 -26.72194 -25.65834 -24.20808 -23.34259 -21.64293 -21.34292 -20.65702 -19.72739 -18.43605 -17.96866 -17.63011 -16.50010 -16.33881 -15.87593 -15.31226 -14.95210 -14.76667 -14.39858 -14.21700 -14.03107 -13.73617 -13.62578 -13.56911 -13.31684 -13.01116 -12.67158 -12.55383 -12.49356 -12.25840 -12.13923 -11.88662 -11.46345 -11.25042 -11.05014 -10.79835 -10.40198 -10.34857 -10.30877 -10.11955 -10.09533 -10.06936 -9.59201 -9.52275 -9.21047 -8.72859 -8.60550 -8.02880 -6.74013 -5.91981 -3.35849 2.32787 2.67809 2.89844 3.23775 3.29709 3.37434 3.38643 3.75887 4.12514 4.33878 4.40366 4.60758 4.79092 5.02982 5.08479 5.18730 5.22493 5.32065 5.46184 5.50902 5.53320 5.59313 5.68853 5.74765 5.77585 5.91031 6.02661 6.17124 6.32267 6.33252 6.39197 6.47178 6.48820 6.60346 6.74897 6.82153 6.97116 6.98129 7.01747 7.30479 7.40220 7.50379 7.64423 7.70852 8.26337 8.28315 8.48734 9.02954 9.65385 10.26022 11.14636 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027002 B = 0.003709 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.728315 B = 7547.511570 C = 7828.132428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.638 5.638 3 C 0.109 3.891 4 C 0.100 3.900 5 H 0.117 0.883 6 C 0.502 3.498 7 O -0.535 6.535 8 N -0.583 5.583 9 C 0.092 3.908 10 C 0.178 3.822 11 H 0.117 0.883 12 C -0.113 4.113 13 C -0.138 4.138 14 C -0.125 4.125 15 C 0.151 3.849 16 H 0.081 0.919 17 C 0.090 3.910 18 N -0.577 5.577 19 C -0.255 4.255 20 H 0.069 0.931 21 C 0.007 3.993 22 N -0.894 5.894 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.279 1.279 27 N -0.713 5.713 28 C 0.706 3.294 29 O -0.587 6.587 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.040 0.960 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.255 0.745 46 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.403 -3.355 -6.615 14.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.378 5.378 3 C -0.016 4.016 4 C -0.010 4.010 5 H 0.134 0.866 6 C 0.288 3.712 7 O -0.412 6.412 8 N -0.316 5.316 9 C -0.031 4.031 10 C 0.071 3.929 11 H 0.134 0.866 12 C -0.152 4.152 13 C -0.176 4.176 14 C -0.164 4.164 15 C 0.042 3.958 16 H 0.099 0.901 17 C -0.035 4.035 18 N -0.298 5.298 19 C -0.384 4.384 20 H 0.086 0.914 21 C -0.193 4.193 22 N -0.537 5.537 23 Si 0.732 3.268 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.205 1.205 27 N -0.374 5.374 28 C 0.407 3.593 29 O -0.466 6.466 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -12.612 -4.249 -5.995 14.596 hybrid contribution 0.881 0.851 0.255 1.251 sum -11.731 -3.398 -5.740 13.495 Atomic orbital electron populations 1.21409 0.75512 1.03979 1.01341 1.47066 1.06395 1.05637 1.78693 1.22324 0.86261 0.88931 1.04045 1.21966 0.97149 0.83101 0.98829 0.86560 1.20282 0.79634 0.82350 0.88886 1.90730 1.60463 1.52601 1.37380 1.48200 1.51599 1.14431 1.17363 1.22580 0.95551 0.99156 0.85813 1.21163 0.89590 0.88884 0.93277 0.86583 1.21772 1.00803 0.96875 0.95708 1.22100 1.01826 0.96821 0.96849 1.21989 1.01152 0.96850 0.96402 1.21209 0.89514 0.94398 0.90653 0.90124 1.22508 1.00646 0.93086 0.87266 1.44421 1.66382 1.10175 1.08845 1.19133 1.09689 0.83944 1.25633 0.91373 1.25021 0.95131 0.97231 1.01898 1.69986 1.16067 1.30710 1.36980 0.86297 0.77067 0.84545 0.78849 1.21434 1.21841 1.20483 1.44835 1.06861 1.06326 1.79360 1.15788 0.81729 0.84574 0.77256 1.90947 1.75908 1.20887 1.58826 0.89552 0.92096 0.92007 0.89543 0.88734 0.90127 0.91919 0.90820 0.94451 0.90880 0.94962 0.94172 0.92008 0.91036 0.91131 0.93477 0.72394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.01 11.22 59.85 0.67 1.68 16 2 N -0.64 -7.37 3.36 -186.46 -0.63 -7.99 16 3 C 0.11 1.03 7.05 -2.98 -0.02 1.01 16 4 C 0.10 1.15 3.12 -68.20 -0.21 0.93 16 5 H 0.12 1.09 6.64 -51.93 -0.34 0.74 16 6 C 0.50 7.57 4.13 -10.98 -0.05 7.52 16 7 O -0.53 -10.15 15.97 5.56 0.09 -10.06 16 8 N -0.58 -8.88 1.65 -172.27 -0.28 -9.17 16 9 C 0.09 1.67 5.89 -3.49 -0.02 1.65 16 10 C 0.18 3.73 2.67 -66.85 -0.18 3.55 16 11 H 0.12 2.83 5.88 -51.93 -0.31 2.52 16 12 C -0.11 -2.30 5.56 -26.53 -0.15 -2.44 16 13 C -0.14 -2.41 5.55 -26.72 -0.15 -2.55 16 14 C -0.12 -2.05 5.58 -26.54 -0.15 -2.20 16 15 C 0.15 2.54 3.62 -66.87 -0.24 2.29 16 16 H 0.08 1.32 8.01 -51.93 -0.42 0.90 16 17 C 0.09 1.19 5.69 -3.52 -0.02 1.17 16 18 N -0.58 -12.28 2.53 -155.46 -0.39 -12.67 16 19 C -0.25 -6.15 9.71 -15.06 -0.15 -6.30 16 20 H 0.07 1.62 7.90 -52.48 -0.41 1.20 16 21 C 0.01 0.17 4.97 -17.43 -0.09 0.08 16 22 N -0.89 -23.51 11.00 55.49 0.61 -22.90 16 23 Si 0.90 20.09 29.59 -169.99 -5.03 15.06 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 27 N -0.71 -9.41 5.62 -59.33 -0.33 -9.74 16 28 C 0.71 10.49 8.61 -88.40 -0.76 9.73 16 29 O -0.59 -10.78 17.29 5.28 0.09 -10.69 16 30 H 0.09 0.82 7.52 -51.93 -0.39 0.43 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.83 7.72 -51.93 -0.40 0.43 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.52 6.99 -51.93 -0.36 1.16 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.73 7.99 -51.93 -0.41 1.31 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.21 2.50 -52.43 -0.13 1.08 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.68 5.40 -51.93 -0.28 0.40 16 45 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 46 H 0.43 5.47 8.96 -40.82 -0.37 5.10 16 LS Contribution 348.79 15.07 5.26 5.26 Total: -1.00 -31.75 348.79 -8.89 -40.65 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.77 Total: 6.15 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: -1.51 Total: 16.12 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -1.03 Total: -62.48 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.18 Total: -20.75 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.75 -8.89 -40.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039826781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.112 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds