Wall clock time and date at job start Fri Apr 10 2020 18:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 110.99776 * 2 1 4 4 C 1.46895 * 111.00114 * 123.95799 * 2 1 3 5 5 C 1.50701 * 109.47322 * 66.04529 * 4 2 1 6 6 C 1.35312 * 126.66530 * 90.00245 * 5 4 2 7 7 C 1.42268 * 103.92324 * 179.97438 * 6 5 4 8 8 C 1.48333 * 126.94281 * 179.97438 * 7 6 5 9 9 O 1.21493 * 119.99696 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00255 * 179.97438 * 8 7 6 11 11 C 1.46507 * 119.99905 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46826 * 179.97438 * 11 10 8 13 13 H 1.08998 * 112.85020 * 316.19480 * 12 11 10 14 14 C 1.53776 * 113.61305 * 87.50545 * 12 11 10 15 15 C 1.53783 * 87.08093 * 139.97922 * 14 12 11 16 16 H 1.09002 * 113.61076 * 220.01786 * 15 14 12 17 17 N 1.46502 * 113.61513 * 89.11461 * 15 14 12 18 18 C 1.36938 * 119.99795 * 107.50469 * 17 15 14 19 19 H 1.07999 * 119.99743 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00004 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99632 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00177 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47259 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47168 * 119.99872 * 22 20 18 25 25 H 1.48498 * 109.47223 * 239.99844 * 22 20 18 26 26 C 1.53779 * 113.60873 * 185.00334 * 12 11 10 27 27 N 1.30984 * 106.12332 * 359.97438 * 7 6 5 28 28 O 1.20905 * 111.44289 * 359.97438 * 27 7 6 29 29 H 1.08996 * 109.47407 * 296.04493 * 1 2 3 30 30 H 1.09005 * 109.46815 * 56.04616 * 1 2 3 31 31 H 1.09006 * 109.46852 * 176.04223 * 1 2 3 32 32 H 1.09006 * 109.47222 * 183.95084 * 3 2 1 33 33 H 1.09000 * 109.47534 * 303.95505 * 3 2 1 34 34 H 1.09001 * 109.47149 * 63.95593 * 3 2 1 35 35 H 1.09004 * 109.46964 * 306.04310 * 4 2 1 36 36 H 1.08998 * 109.47354 * 186.04701 * 4 2 1 37 37 H 1.08002 * 128.04204 * 0.02562 * 6 5 4 38 38 H 0.97000 * 119.99932 * 0.02562 * 10 8 7 39 39 H 1.08992 * 109.46832 * 300.00400 * 11 10 8 40 40 H 1.09001 * 109.46640 * 59.99945 * 11 10 8 41 41 H 1.08998 * 113.61404 * 254.52582 * 14 12 11 42 42 H 1.09004 * 113.61634 * 25.42655 * 14 12 11 43 43 H 0.96993 * 119.99858 * 287.50512 * 17 15 14 44 44 H 0.97003 * 120.00044 * 180.02562 * 21 20 18 45 45 H 1.08998 * 113.61828 * 334.56041 * 26 12 11 46 46 H 1.09004 * 113.61709 * 105.39236 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6370 -2.2205 0.9727 6 6 2.3708 -3.1672 0.3434 7 6 1.5897 -4.3491 0.4746 8 6 1.9238 -5.7000 -0.0388 9 8 2.9617 -5.8803 -0.6439 10 7 1.0764 -6.7277 0.1668 11 6 1.4061 -8.0618 -0.3408 12 6 0.2865 -9.0380 0.0257 13 1 -0.0599 -8.9186 1.0523 14 6 -0.8506 -9.0875 -1.0083 15 6 -0.8811 -10.6088 -0.7855 16 1 -1.0261 -11.1815 -1.7016 17 7 -1.7776 -11.0257 0.2956 18 6 -2.9591 -11.6527 0.0018 19 1 -3.2300 -11.8395 -1.0268 20 6 -3.8088 -12.0473 1.0261 21 7 -3.4787 -11.8192 2.2796 22 14 -5.4207 -12.9019 0.6254 23 1 -5.5561 -13.0382 -0.8472 24 1 -5.4359 -14.2486 1.2510 25 1 -6.5520 -12.0980 1.1536 26 6 0.5912 -10.4962 -0.3559 27 7 0.5159 -4.0034 1.1403 28 8 0.5303 -2.8279 1.4227 29 1 -0.3634 0.4512 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0828 1.3433 -0.0708 33 1 1.5897 1.9164 -0.8524 34 1 1.7043 1.8723 0.9233 35 1 1.5611 -0.3873 2.0627 36 1 3.0797 -0.6611 1.1755 37 1 3.3276 -3.0527 -0.1444 38 1 0.2478 -6.5838 0.6502 39 1 1.5135 -8.0218 -1.4247 40 1 2.3420 -8.3990 0.1048 41 1 -1.7589 -8.5804 -0.6831 42 1 -0.5403 -8.7995 -2.0128 43 1 -1.5344 -10.8577 1.2193 44 1 -4.0723 -12.0952 2.9954 45 1 1.2957 -10.5933 -1.1819 46 1 0.8482 -11.1259 0.4959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086412160.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:20 Heat of formation + Delta-G solvation = 43.591441 kcal Electronic energy + Delta-G solvation = -26158.249015 eV Core-core repulsion = 22279.630351 eV Total energy + Delta-G solvation = -3878.618665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.23346 -41.00229 -39.89643 -38.50351 -36.15985 -35.24076 -34.94968 -33.46414 -32.08964 -29.12635 -28.55988 -28.33762 -26.46896 -26.12411 -25.20722 -24.06119 -23.18304 -22.82479 -21.26990 -19.82898 -19.37411 -19.02198 -18.75004 -17.95434 -17.22356 -16.71465 -16.54840 -16.24602 -16.19879 -16.05708 -15.81053 -15.62726 -15.04051 -14.79131 -14.75035 -14.63663 -13.85407 -13.78815 -13.44041 -13.32659 -13.09031 -12.98497 -12.94953 -12.74352 -12.69589 -12.55125 -12.40156 -12.15468 -12.07376 -11.78653 -11.61223 -11.52428 -11.36699 -10.97802 -10.83754 -10.66415 -10.26371 -9.39341 -9.02058 -7.97187 -5.25650 -0.04536 0.56952 1.46723 1.47058 1.57342 1.73708 1.93375 1.97220 2.54261 2.81188 3.06484 3.34944 3.37520 3.67847 3.72906 3.80781 3.85513 4.04193 4.08581 4.12635 4.28318 4.28831 4.36131 4.38948 4.56518 4.58007 4.67372 4.68802 4.74238 4.77954 4.86149 4.90241 4.95597 5.02215 5.05399 5.11936 5.14499 5.31008 5.40418 5.50741 5.63113 5.89014 5.98525 6.18835 6.26539 6.79859 6.96344 7.31349 8.08483 8.30547 9.26305 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.002055 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.768979 B =13620.923457 C =14639.001191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.561 5.561 3 C 0.025 3.975 4 C 0.136 3.864 5 C -0.017 4.017 6 C -0.166 4.166 7 C -0.048 4.048 8 C 0.596 3.404 9 O -0.554 6.554 10 N -0.705 5.705 11 C 0.138 3.862 12 C -0.106 4.106 13 H 0.078 0.922 14 C -0.156 4.156 15 C 0.144 3.856 16 H 0.063 0.937 17 N -0.720 5.720 18 C -0.242 4.242 19 H 0.078 0.922 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.974 3.026 23 H -0.265 1.265 24 H -0.293 1.293 25 H -0.295 1.295 26 C -0.130 4.130 27 N -0.346 5.346 28 O 0.126 5.874 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.136 0.864 37 H 0.195 0.805 38 H 0.411 0.589 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.094 0.906 43 H 0.374 0.626 44 H 0.251 0.749 45 H 0.110 0.890 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.448 27.655 -3.711 31.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.286 5.286 3 C -0.122 4.122 4 C 0.008 3.992 5 C -0.080 4.080 6 C -0.190 4.190 7 C -0.205 4.205 8 C 0.380 3.620 9 O -0.431 6.431 10 N -0.355 5.355 11 C 0.016 3.984 12 C -0.124 4.124 13 H 0.096 0.904 14 C -0.196 4.196 15 C 0.034 3.966 16 H 0.081 0.919 17 N -0.358 5.358 18 C -0.373 4.373 19 H 0.096 0.904 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.803 3.197 23 H -0.190 1.190 24 H -0.220 1.220 25 H -0.222 1.222 26 C -0.169 4.169 27 N -0.045 5.045 28 O 0.048 5.952 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.154 0.846 37 H 0.212 0.788 38 H 0.246 0.754 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.112 0.888 43 H 0.206 0.794 44 H 0.060 0.940 45 H 0.129 0.871 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.128 26.418 -4.305 30.266 hybrid contribution -1.091 -0.049 1.084 1.539 sum 13.037 26.369 -3.221 29.592 Atomic orbital electron populations 1.22466 0.86844 1.01751 1.01881 1.61967 1.08742 1.15761 1.42122 1.22454 1.01670 0.86348 1.01724 1.20795 1.03096 0.81456 0.93883 1.24771 0.86306 0.98426 0.98504 1.22610 1.03839 0.88783 1.03720 1.23522 0.94635 0.97726 1.04653 1.17068 0.83371 0.82408 0.79110 1.90766 1.25717 1.84057 1.42581 1.45971 1.23526 1.09172 1.56829 1.21506 0.97925 0.79401 0.99605 1.22513 0.95388 0.95184 0.99354 0.90404 1.23750 0.97411 0.99722 0.98759 1.21392 0.90158 0.93579 0.91486 0.91857 1.42319 1.19993 1.69198 1.04308 1.19725 0.96072 1.28652 0.92897 0.90445 1.25578 1.02636 1.03511 0.95212 1.69825 1.39054 1.54323 0.98816 0.85062 0.79439 0.77398 0.77800 1.18973 1.22047 1.22195 1.23337 0.97376 0.94283 1.01935 1.74218 1.20564 0.95203 1.14527 1.84765 1.37856 1.15104 1.57472 0.93919 0.90313 0.93229 0.89760 0.90596 0.94148 0.90259 0.84581 0.78788 0.75385 0.90354 0.90749 0.93783 0.88799 0.79426 0.94046 0.87142 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.37 127.69 1.20 1.40 16 2 N -0.56 -5.64 5.01 -953.47 -4.78 -10.42 16 3 C 0.03 0.13 9.57 127.69 1.22 1.35 16 4 C 0.14 1.12 5.52 85.56 0.47 1.60 16 5 C -0.02 -0.26 6.03 25.01 0.15 -0.11 16 6 C -0.17 -3.22 10.92 22.60 0.25 -2.97 16 7 C -0.05 -1.21 7.19 42.96 0.31 -0.90 16 8 C 0.60 17.22 7.85 86.93 0.68 17.91 16 9 O -0.55 -18.40 16.95 -3.69 -0.06 -18.47 16 10 N -0.70 -19.15 5.55 -465.50 -2.59 -21.73 16 11 C 0.14 3.63 5.51 86.38 0.48 4.10 16 12 C -0.11 -3.14 3.63 -10.27 -0.04 -3.18 16 13 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 14 C -0.16 -5.15 7.43 31.12 0.23 -4.92 16 15 C 0.14 5.56 4.56 45.52 0.21 5.76 16 16 H 0.06 2.42 8.10 -2.39 -0.02 2.41 16 17 N -0.72 -36.17 5.31 -320.43 -1.70 -37.87 16 18 C -0.24 -13.44 9.97 84.03 0.84 -12.61 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 21 N -0.97 -59.57 13.06 21.65 0.28 -59.29 16 22 Si 0.97 46.39 29.55 68.60 2.03 48.41 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 26 C -0.13 -3.98 7.39 31.12 0.23 -3.75 16 27 N -0.35 -8.72 11.84 -49.51 -0.59 -9.31 16 28 O 0.13 2.59 10.61 71.82 0.76 3.35 16 29 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.08 0.76 8.12 -2.38 -0.02 0.74 16 31 H 0.05 0.74 6.84 -2.38 -0.02 0.72 16 32 H 0.08 0.25 8.12 -2.38 -0.02 0.23 16 33 H 0.08 0.38 8.12 -2.39 -0.02 0.36 16 34 H 0.04 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.08 0.45 8.12 -2.38 -0.02 0.43 16 36 H 0.14 0.50 8.06 -2.39 -0.02 0.48 16 37 H 0.19 3.09 8.06 -2.91 -0.02 3.07 16 38 H 0.41 10.99 8.23 -92.71 -0.76 10.23 16 39 H 0.08 1.99 7.84 -2.39 -0.02 1.97 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.09 2.64 7.90 -2.38 -0.02 2.63 16 43 H 0.37 20.15 7.90 -92.71 -0.73 19.42 16 44 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 45 H 0.11 2.70 8.10 -2.39 -0.02 2.69 16 46 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -70.72 388.15 -0.44 -71.17 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: -0.50 Total: 34.46 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 6.69 Total: -0.31 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -9.37 Total: -138.62 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.70 Total: -15.11 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -70.72 -0.44 -71.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086412160.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.760 kcal (2) G-P(sol) polarization free energy of solvation -70.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds