Wall clock time and date at job start Fri Apr 10 2020 18:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35781 * 116.99601 * 2 1 4 4 C 1.35588 * 126.08439 * 179.72965 * 3 2 1 5 5 C 1.41052 * 107.80143 * 180.26562 * 4 3 2 6 6 C 1.47718 * 125.98733 * 179.79482 * 5 4 3 7 7 O 1.21568 * 119.99628 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00363 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99952 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47011 * 180.02562 * 9 8 6 11 11 H 1.09005 * 110.43878 * 307.54440 * 10 9 8 12 12 C 1.54892 * 110.48878 * 70.22659 * 10 9 8 13 13 C 1.54892 * 102.74830 * 156.62022 * 12 10 9 14 14 C 1.54259 * 104.19607 * 322.06033 * 13 12 10 15 15 H 1.09005 * 110.07552 * 142.92332 * 14 13 12 16 16 N 1.46506 * 110.03166 * 264.32500 * 14 13 12 17 17 C 1.36937 * 119.99910 * 272.17136 * 16 14 13 18 18 H 1.08004 * 120.00268 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99748 * 179.97438 * 17 16 14 20 20 N 1.31615 * 119.99906 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99733 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47285 * 59.99875 * 21 19 17 23 23 H 1.48499 * 109.46940 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47010 * 299.99852 * 21 19 17 25 25 C 1.53875 * 106.60113 * 23.60948 * 14 13 12 26 26 N 1.31867 * 108.03619 * 359.75739 * 5 4 3 27 27 N 1.35837 * 126.08258 * 359.58343 * 3 2 1 28 28 C 1.46500 * 125.94998 * 0.02562 * 27 3 2 29 29 H 1.09002 * 109.46765 * 171.77703 * 1 2 3 30 30 H 1.08998 * 109.47355 * 291.77765 * 1 2 3 31 31 H 1.09001 * 109.47196 * 51.78059 * 1 2 3 32 32 H 1.08010 * 126.09943 * 0.02820 * 4 3 2 33 33 H 0.96998 * 119.99673 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47889 * 300.00142 * 9 8 6 35 35 H 1.08999 * 109.47425 * 60.00545 * 9 8 6 36 36 H 1.08998 * 110.75455 * 274.93530 * 12 10 9 37 37 H 1.08997 * 110.75244 * 38.30241 * 12 10 9 38 38 H 1.09003 * 110.48331 * 203.38021 * 13 12 10 39 39 H 1.09001 * 110.59820 * 80.79877 * 13 12 10 40 40 H 0.96999 * 119.99943 * 92.16631 * 16 14 13 41 41 H 0.97003 * 119.99637 * 179.97438 * 20 19 17 42 42 H 1.08998 * 110.03167 * 240.71308 * 25 14 13 43 43 H 1.09006 * 110.03194 * 119.28920 * 25 14 13 44 44 H 1.08998 * 109.47340 * 276.74964 * 28 27 3 45 45 H 1.08997 * 109.47484 * 36.74861 * 28 27 3 46 46 H 1.09001 * 109.47006 * 156.74872 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2099 0.0000 4 6 3.3842 1.4240 0.0052 5 6 3.5978 2.8183 0.0093 6 6 4.9107 3.4952 0.0198 7 8 5.9334 2.8379 0.0262 8 7 4.9749 4.8414 0.0223 9 6 6.2770 5.5126 0.0332 10 6 6.0693 7.0285 0.0345 11 1 5.4071 7.3226 -0.7798 12 6 5.4993 7.4964 1.3966 13 6 5.9207 8.9860 1.4499 14 6 7.3286 9.0036 0.8199 15 1 7.4604 9.9065 0.2235 16 7 8.3489 8.9426 1.8695 17 6 8.8046 10.0965 2.4492 18 1 8.4122 11.0515 2.1325 19 6 9.7709 10.0386 3.4442 20 7 10.2487 8.8747 3.8305 21 14 10.3930 11.6127 4.2345 22 1 9.2597 12.3259 4.8762 23 1 11.4145 11.2814 5.2602 24 1 11.0001 12.4822 3.1949 25 6 7.4232 7.7590 -0.0801 26 7 2.4203 3.4118 0.0014 27 7 1.4303 2.4210 -0.0080 28 6 -0.0165 2.6509 -0.0176 29 1 -0.3633 -1.0171 -0.1470 30 1 -0.3634 0.3813 0.9543 31 1 -0.3633 0.6358 -0.8074 32 1 4.1504 0.6628 0.0096 33 1 4.1589 5.3658 0.0175 34 1 6.8286 5.2212 0.9270 35 1 6.8422 5.2238 -0.8529 36 1 4.4136 7.4013 1.4141 37 1 5.9504 6.9377 2.2166 38 1 5.9601 9.3346 2.4819 39 1 5.2341 9.5998 0.8669 40 1 8.7015 8.0849 2.1538 41 1 10.9242 8.8343 4.5255 42 1 8.2281 7.1097 0.2641 43 1 7.6000 8.0579 -1.1133 44 1 -0.3881 2.5851 -1.0401 45 1 -0.5083 1.8969 0.5969 46 1 -0.2296 3.6418 0.3834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086753105.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:32 Heat of formation + Delta-G solvation = 0.792437 kcal Electronic energy + Delta-G solvation = -26502.164308 eV Core-core repulsion = 22621.689740 eV Total energy + Delta-G solvation = -3880.474569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.72929 -40.76493 -39.52071 -39.09162 -36.31673 -34.99417 -34.47407 -32.53901 -31.30606 -30.23921 -29.09588 -28.71666 -27.27819 -25.91378 -25.03100 -23.72066 -22.51179 -21.49297 -20.92001 -20.52582 -19.28764 -19.04714 -17.74632 -17.51169 -17.43529 -16.67063 -16.62423 -16.30643 -16.23825 -16.06758 -15.61972 -15.41134 -15.11128 -14.85911 -14.63732 -14.49763 -14.18885 -14.01733 -13.88356 -13.50937 -13.11877 -12.92182 -12.45420 -12.44160 -12.36735 -12.29164 -12.15580 -11.96779 -11.83759 -11.70508 -11.61596 -11.47422 -11.41467 -11.25937 -10.86270 -10.34094 -10.06150 -9.55139 -8.93654 -7.90528 -5.17904 0.17759 1.02913 1.08053 1.47336 1.50496 1.56535 1.76870 2.24152 2.27067 2.58869 3.07933 3.41004 3.67942 3.78305 3.83746 3.88218 4.00570 4.14837 4.23165 4.26332 4.31409 4.38283 4.45244 4.52886 4.57361 4.62071 4.66297 4.71704 4.73779 4.81871 4.87084 4.95274 4.98678 5.10651 5.16716 5.21145 5.25294 5.31578 5.46971 5.53124 5.60786 5.68963 6.08530 6.26827 6.32706 6.51390 7.06032 7.37230 8.18075 8.38870 9.32939 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027543 B = 0.002004 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.359639 B =13967.204559 C =14171.072503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.300 6.300 3 C 0.281 3.719 4 C -0.265 4.265 5 C 0.043 3.957 6 C 0.595 3.405 7 O -0.564 6.564 8 N -0.696 5.696 9 C 0.131 3.869 10 C -0.084 4.084 11 H 0.110 0.890 12 C -0.107 4.107 13 C -0.138 4.138 14 C 0.161 3.839 15 H 0.046 0.954 16 N -0.734 5.734 17 C -0.236 4.236 18 H 0.076 0.924 19 C -0.081 4.081 20 N -0.972 5.972 21 Si 0.972 3.028 22 H -0.279 1.279 23 H -0.298 1.298 24 H -0.278 1.278 25 C -0.116 4.116 26 N -0.255 5.255 27 N -0.382 5.382 28 C 0.061 3.939 29 H 0.130 0.870 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.417 0.583 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.037 0.963 39 H 0.078 0.922 40 H 0.370 0.630 41 H 0.249 0.751 42 H 0.052 0.948 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.123 0.877 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.784 -15.663 -12.134 34.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.206 6.206 3 C 0.113 3.887 4 C -0.296 4.296 5 C -0.123 4.123 6 C 0.379 3.621 7 O -0.441 6.441 8 N -0.347 5.347 9 C 0.008 3.992 10 C -0.102 4.102 11 H 0.128 0.872 12 C -0.145 4.145 13 C -0.178 4.178 14 C 0.053 3.947 15 H 0.064 0.936 16 N -0.374 5.374 17 C -0.368 4.368 18 H 0.093 0.907 19 C -0.273 4.273 20 N -0.623 5.623 21 Si 0.801 3.199 22 H -0.205 1.205 23 H -0.225 1.225 24 H -0.204 1.204 25 C -0.155 4.155 26 N -0.088 5.088 27 N -0.180 5.180 28 C -0.077 4.077 29 H 0.148 0.852 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.175 0.825 33 H 0.254 0.746 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.096 0.904 40 H 0.202 0.798 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.120 0.880 45 H 0.141 0.859 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -28.686 -15.118 -12.118 34.617 hybrid contribution 0.841 -0.066 0.994 1.304 sum -27.845 -15.185 -11.125 33.611 Atomic orbital electron populations 1.24107 0.75197 1.07482 1.03164 1.86341 1.24508 1.20325 1.89460 1.19438 0.90667 0.79935 0.98691 1.20426 0.93320 0.95454 1.20367 1.21603 0.92518 0.93426 1.04778 1.17126 0.86149 0.82436 0.76351 1.90802 1.35703 1.66065 1.51543 1.45747 1.10756 1.05223 1.72967 1.21453 0.83991 0.91919 1.01856 1.22110 0.97600 0.91558 0.98975 0.87231 1.22445 1.00503 0.95446 0.96074 1.22950 0.97921 0.96731 1.00236 1.21143 0.88298 0.96474 0.88778 0.93625 1.42764 1.46025 1.05348 1.43275 1.19624 1.15678 0.87931 1.13575 0.90656 1.25562 1.00971 0.99597 1.01197 1.69825 1.33611 1.24727 1.34126 0.85231 0.77552 0.79297 0.77822 1.20489 1.22484 1.20386 1.22373 0.96676 0.96175 1.00236 1.77606 0.94985 1.11931 1.24229 1.49410 1.08194 1.02075 1.58365 1.23069 0.71644 1.07202 1.05823 0.85162 0.90137 0.89954 0.82491 0.74550 0.93053 0.90927 0.89854 0.93981 0.94357 0.90353 0.79799 0.94249 0.92911 0.89723 0.87985 0.85900 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.02 9.42 113.37 1.07 1.05 16 2 O -0.30 -4.29 10.57 -91.10 -0.96 -5.26 16 3 C 0.28 5.30 7.78 83.46 0.65 5.95 16 4 C -0.27 -6.57 10.59 22.35 0.24 -6.33 16 5 C 0.04 1.11 7.09 42.34 0.30 1.41 16 6 C 0.60 17.63 7.83 86.75 0.68 18.31 16 7 O -0.56 -20.87 16.90 -3.93 -0.07 -20.94 16 8 N -0.70 -17.21 5.44 -466.11 -2.54 -19.75 16 9 C 0.13 3.54 4.96 86.38 0.43 3.96 16 10 C -0.08 -2.09 2.89 -9.72 -0.03 -2.11 16 11 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 12 C -0.11 -3.04 6.19 31.89 0.20 -2.84 16 13 C -0.14 -4.65 6.54 31.67 0.21 -4.44 16 14 C 0.16 6.26 3.55 45.71 0.16 6.42 16 15 H 0.05 1.78 8.09 -2.38 -0.02 1.76 16 16 N -0.73 -37.55 5.08 -319.50 -1.62 -39.17 16 17 C -0.24 -13.31 9.96 84.03 0.84 -12.47 16 18 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 19 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 20 N -0.97 -61.25 13.06 21.65 0.28 -60.97 16 21 Si 0.97 47.20 29.55 68.60 2.03 49.23 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 C -0.12 -3.62 6.14 31.32 0.19 -3.43 16 26 N -0.26 -5.55 12.26 -48.43 -0.59 -6.15 16 27 N -0.38 -6.06 4.03 -480.57 -1.94 -8.00 16 28 C 0.06 0.26 9.59 127.77 1.23 1.48 16 29 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.08 -0.02 6.44 -2.39 -0.02 -0.04 16 31 H 0.08 -0.04 5.93 -2.39 -0.01 -0.05 16 32 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 33 H 0.42 8.39 8.13 -92.71 -0.75 7.63 16 34 H 0.05 1.66 8.02 -2.39 -0.02 1.64 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.04 1.43 7.96 -2.39 -0.02 1.41 16 38 H 0.04 1.54 8.04 -2.39 -0.02 1.52 16 39 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.37 20.64 7.52 -92.71 -0.70 19.94 16 41 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.05 1.89 7.31 -2.39 -0.02 1.87 16 43 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 44 H 0.10 0.04 7.58 -2.39 -0.02 0.02 16 45 H 0.12 -0.13 4.67 -2.39 -0.01 -0.14 16 46 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -79.10 377.12 0.77 -78.33 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: -0.44 Total: 30.04 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 6.62 Total: 2.63 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -6.41 Total: -134.03 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -1.03 Total: -26.19 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -79.10 0.77 -78.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086753105.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.122 kcal (2) G-P(sol) polarization free energy of solvation -79.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds