Wall clock time and date at job start Fri Apr 10 2020 18:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00109 * 2 1 4 4 H 1.08998 * 109.47017 * 329.99243 * 3 2 1 5 5 C 1.52998 * 109.47394 * 89.99727 * 3 2 1 6 6 C 1.50704 * 109.47298 * 209.99949 * 3 2 1 7 7 O 1.21286 * 119.99665 * 359.97438 * 6 3 2 8 8 N 1.34773 * 120.00437 * 179.97438 * 6 3 2 9 9 C 1.47019 * 125.64942 * 180.02562 * 8 6 3 10 10 C 1.54332 * 107.26924 * 178.99409 * 9 8 6 11 11 H 1.09002 * 110.71796 * 96.16733 * 10 9 8 12 12 C 1.50703 * 110.71690 * 219.43770 * 10 9 8 13 13 C 1.39868 * 126.03763 * 53.21731 * 12 10 9 14 14 N 1.30838 * 108.20161 * 179.80987 * 13 12 10 15 15 N 1.40078 * 108.20460 * 0.44273 * 14 13 12 16 16 C 1.46501 * 126.04075 * 179.73647 * 15 14 13 17 17 C 1.34956 * 107.92792 * 359.71162 * 15 14 13 18 18 C 1.55153 * 102.94085 * 337.80218 * 10 9 8 19 19 H 1.08996 * 111.00718 * 277.38850 * 18 10 9 20 20 N 1.46504 * 111.00169 * 153.57515 * 18 10 9 21 21 C 1.36943 * 119.99781 * 158.18143 * 20 18 10 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99622 * 180.27904 * 21 20 18 24 24 N 1.31622 * 119.99400 * 179.72313 * 23 21 20 25 25 Si 1.86800 * 120.00144 * 359.72086 * 23 21 20 26 26 H 1.48506 * 109.46719 * 90.00417 * 25 23 21 27 27 H 1.48501 * 109.46793 * 210.00071 * 25 23 21 28 28 H 1.48489 * 109.47333 * 330.00315 * 25 23 21 29 29 C 1.47469 * 125.62567 * 0.02562 * 8 6 3 30 30 H 1.08999 * 109.46518 * 60.00297 * 1 2 3 31 31 H 1.08998 * 109.46843 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47103 * 300.00370 * 1 2 3 33 33 H 1.09001 * 109.46785 * 60.00102 * 5 3 2 34 34 H 1.09003 * 109.47069 * 179.97438 * 5 3 2 35 35 H 1.08994 * 109.47218 * 300.00063 * 5 3 2 36 36 H 1.08996 * 109.88559 * 59.57824 * 9 8 6 37 37 H 1.08999 * 110.00808 * 298.47884 * 9 8 6 38 38 H 1.08008 * 125.89951 * 359.97438 * 13 12 10 39 39 H 1.09000 * 109.46959 * 269.97351 * 16 15 14 40 40 H 1.09000 * 109.46831 * 29.97299 * 16 15 14 41 41 H 1.08999 * 109.47055 * 149.97239 * 16 15 14 42 42 H 1.07997 * 126.13224 * 180.02562 * 17 15 14 43 43 H 0.97000 * 120.00410 * 338.18469 * 20 18 10 44 44 H 0.97009 * 119.99492 * 179.97438 * 24 23 21 45 45 H 1.08997 * 110.34970 * 85.23682 * 29 8 6 46 46 H 1.09006 * 110.40687 * 322.89513 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.3387 1.2639 -0.7104 7 8 3.7476 0.2190 -1.1709 8 7 4.0723 2.3877 -0.8340 9 6 5.3790 2.4890 -1.5001 10 6 5.8221 3.9650 -1.4176 11 1 6.4889 4.1207 -0.5694 12 6 6.4815 4.3963 -2.7022 13 6 5.9414 4.2723 -3.9864 14 7 6.8036 4.7599 -4.8413 15 7 7.9255 5.2009 -4.1279 16 6 9.1279 5.8094 -4.7026 17 6 7.7031 4.9668 -2.8176 18 6 4.4823 4.7188 -1.2082 19 1 3.9736 4.8828 -2.1581 20 7 4.6971 5.9861 -0.5052 21 6 3.7720 6.9907 -0.6066 22 1 2.8843 6.8489 -1.2052 23 6 3.9783 8.1935 0.0548 24 7 3.0918 9.1611 -0.0472 25 14 5.5141 8.4390 1.0895 26 1 6.5958 9.0043 0.2434 27 1 5.2162 9.3752 2.2031 28 1 5.9511 7.1328 1.6443 29 6 3.6967 3.7192 -0.3233 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.8829 1.0775 1.9563 34 1 2.6615 2.7670 1.4424 35 1 1.2569 1.8015 1.9563 36 1 5.2877 2.1872 -2.5435 37 1 6.1062 1.8548 -0.9931 38 1 4.9777 3.8497 -4.2301 39 1 9.8521 5.0298 -4.9391 40 1 8.8632 6.3476 -5.6128 41 1 9.5630 6.5035 -3.9836 42 1 8.3788 5.1943 -2.0064 43 1 5.4946 6.1136 0.0321 44 1 3.2358 10.0015 0.4153 45 1 3.9934 3.8224 0.7204 46 1 2.6239 3.8789 -0.4312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086969260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:48 Heat of formation + Delta-G solvation = 5.936827 kcal Electronic energy + Delta-G solvation = -28059.585660 eV Core-core repulsion = 24179.334169 eV Total energy + Delta-G solvation = -3880.251491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.22803 -41.23049 -39.28077 -38.21967 -35.93147 -34.60060 -33.55747 -32.92888 -31.98968 -29.97701 -29.16387 -27.69944 -27.25233 -25.95717 -24.87040 -23.42583 -22.48819 -21.70726 -20.88069 -20.52261 -19.52427 -18.42497 -17.71552 -17.59300 -17.06065 -16.76431 -16.33275 -16.22836 -16.07129 -15.43660 -15.25843 -15.19832 -14.80024 -14.65989 -14.36048 -14.23366 -14.07311 -13.65027 -13.60096 -13.49957 -13.38795 -13.34015 -13.09119 -12.91243 -12.72037 -12.51705 -12.31391 -12.22067 -12.04580 -11.79334 -11.71194 -11.39672 -11.11246 -10.94252 -10.53832 -10.30377 -9.70711 -9.41620 -9.07124 -7.94760 -5.29277 1.00798 1.44455 1.47785 1.51617 1.55380 1.67496 1.76493 1.88596 2.55700 2.89768 3.34373 3.35992 3.55981 3.76899 3.84375 3.91889 4.00472 4.02074 4.06265 4.22695 4.33450 4.38533 4.46749 4.47905 4.48615 4.54529 4.55095 4.68897 4.70448 4.78335 4.78797 4.85021 4.85237 4.95714 5.03568 5.14368 5.21266 5.23280 5.42819 5.71792 5.84936 6.07000 6.20335 6.27712 6.45796 6.77231 7.08799 7.14869 7.87593 8.08043 9.26331 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008716 B = 0.004876 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3211.603521 B = 5741.491012 C = 8256.530188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.392 6.392 3 C 0.075 3.925 4 H 0.103 0.897 5 C -0.171 4.171 6 C 0.525 3.475 7 O -0.574 6.574 8 N -0.606 5.606 9 C 0.125 3.875 10 C -0.015 4.015 11 H 0.105 0.895 12 C -0.229 4.229 13 C 0.047 3.953 14 N -0.335 5.335 15 N -0.382 5.382 16 C 0.094 3.906 17 C 0.064 3.936 18 C 0.182 3.818 19 H 0.060 0.940 20 N -0.729 5.729 21 C -0.223 4.223 22 H 0.059 0.941 23 C -0.059 4.059 24 N -0.985 5.985 25 Si 0.948 3.052 26 H -0.283 1.283 27 H -0.305 1.305 28 H -0.240 1.240 29 C 0.080 3.920 30 H 0.049 0.951 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.181 0.819 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.110 0.890 42 H 0.204 0.796 43 H 0.370 0.630 44 H 0.255 0.745 45 H 0.084 0.916 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.971 -12.388 -0.414 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.311 6.311 3 C 0.014 3.986 4 H 0.120 0.880 5 C -0.229 4.229 6 C 0.314 3.686 7 O -0.453 6.453 8 N -0.340 5.340 9 C 0.002 3.998 10 C -0.036 4.036 11 H 0.124 0.876 12 C -0.241 4.241 13 C -0.139 4.139 14 N -0.157 5.157 15 N -0.164 5.164 16 C -0.046 4.046 17 C -0.082 4.082 18 C 0.072 3.928 19 H 0.078 0.922 20 N -0.371 5.371 21 C -0.354 4.354 22 H 0.077 0.923 23 C -0.251 4.251 24 N -0.635 5.635 25 Si 0.776 3.224 26 H -0.210 1.210 27 H -0.232 1.232 28 H -0.164 1.164 29 C -0.046 4.046 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.198 0.802 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.128 0.872 42 H 0.221 0.779 43 H 0.204 0.796 44 H 0.064 0.936 45 H 0.102 0.898 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.467 -12.743 -2.038 14.910 hybrid contribution 0.040 0.773 1.223 1.447 sum 7.507 -11.970 -0.815 14.153 Atomic orbital electron populations 1.23097 0.78693 1.04298 1.01303 1.87970 1.21885 1.26020 1.95184 1.21921 0.92171 0.86726 0.97797 0.87988 1.22331 1.04349 1.02645 0.93542 1.20561 0.86498 0.82050 0.79521 1.90666 1.72788 1.31242 1.50608 1.48391 1.20759 1.08556 1.56310 1.21943 0.83914 0.96256 0.97667 1.20611 0.96063 0.92083 0.94802 0.87640 1.19747 0.96790 1.13008 0.94520 1.23840 0.99368 0.99181 0.91472 1.77241 0.96205 1.20448 1.21809 1.48735 1.15086 1.47654 1.04920 1.22157 0.82188 0.99040 1.01182 1.22794 0.98347 0.99206 0.87885 1.21405 0.93669 0.84029 0.93722 0.92223 1.42439 1.24149 1.12129 1.58406 1.18960 1.00281 0.92459 1.23692 0.92345 1.25423 1.01224 0.95971 1.02469 1.69892 1.38377 1.05999 1.49240 0.85512 0.79948 0.78633 0.78315 1.20981 1.23197 1.16359 1.23377 1.01200 0.80448 0.99533 0.93192 0.88045 0.92088 0.92035 0.89680 0.89428 0.91729 0.90778 0.80213 0.89091 0.89619 0.87196 0.77895 0.79568 0.93606 0.89820 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.82 113.37 1.23 1.62 16 2 O -0.39 -10.74 9.88 -129.94 -1.28 -12.02 16 3 C 0.07 1.90 2.49 29.85 0.07 1.97 16 4 H 0.10 2.25 7.49 -2.39 -0.02 2.23 16 5 C -0.17 -3.63 9.34 71.98 0.67 -2.96 16 6 C 0.52 16.43 7.29 87.66 0.64 17.07 16 7 O -0.57 -22.49 16.83 15.99 0.27 -22.22 16 8 N -0.61 -16.95 3.32 -811.69 -2.70 -19.65 16 9 C 0.12 3.29 6.42 86.73 0.56 3.85 16 10 C -0.01 -0.38 3.00 -10.35 -0.03 -0.41 16 11 H 0.11 2.39 7.99 -2.39 -0.02 2.37 16 12 C -0.23 -6.22 4.95 -20.14 -0.10 -6.32 16 13 C 0.05 1.39 10.73 85.24 0.91 2.31 16 14 N -0.33 -10.43 12.58 -57.02 -0.72 -11.15 16 15 N -0.38 -9.54 4.01 -369.56 -1.48 -11.02 16 16 C 0.09 1.42 11.47 127.77 1.47 2.89 16 17 C 0.06 1.53 11.40 83.54 0.95 2.48 16 18 C 0.18 5.84 3.12 46.38 0.14 5.99 16 19 H 0.06 2.14 7.66 -2.39 -0.02 2.13 16 20 N -0.73 -28.79 5.07 -316.39 -1.60 -30.39 16 21 C -0.22 -11.36 10.46 84.03 0.88 -10.48 16 22 H 0.06 3.32 8.06 -2.91 -0.02 3.30 16 23 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 24 N -0.98 -59.84 13.97 21.65 0.30 -59.54 16 25 Si 0.95 41.27 27.73 68.60 1.90 43.17 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 27 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.24 -8.89 6.52 99.48 0.65 -8.24 16 29 C 0.08 2.22 4.83 86.84 0.42 2.64 16 30 H 0.05 0.82 8.08 -2.39 -0.02 0.80 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 0.87 7.87 -2.39 -0.02 0.85 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.80 4.99 -2.39 -0.01 1.78 16 35 H 0.09 1.51 7.87 -2.39 -0.02 1.49 16 36 H 0.06 1.80 7.21 -2.39 -0.02 1.78 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.18 4.97 8.06 -2.91 -0.02 4.95 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.20 3.25 8.06 -2.91 -0.02 3.23 16 43 H 0.37 13.78 5.60 -92.71 -0.52 13.26 16 44 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 45 H 0.08 2.25 7.07 -2.39 -0.02 2.23 16 46 H 0.08 2.17 7.37 -2.38 -0.02 2.15 16 Total: -1.00 -76.40 376.49 3.38 -73.02 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.41 Total: 31.92 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 8.28 Total: 17.88 kcal Atomic # 7 Polarization: -125.55 SS G_CDS: -6.20 Total: -131.75 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -1.01 Total: -34.24 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.90 Total: 43.17 kcal Total: -76.40 3.38 -73.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086969260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.954 kcal (2) G-P(sol) polarization free energy of solvation -76.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds