Wall clock time and date at job start Fri Apr 10 2020 18:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47387 * 125.37607 * 2 1 4 4 C 1.54103 * 103.70199 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.54848 * 241.22202 * 4 3 2 6 6 C 1.50706 * 110.55011 * 118.55950 * 4 3 2 7 7 O 1.21283 * 119.99689 * 261.99719 * 6 4 3 8 8 N 1.34764 * 120.00374 * 81.99712 * 6 4 3 9 9 C 1.48102 * 125.74901 * 179.97438 * 8 6 4 10 10 C 1.53559 * 103.44121 * 204.37561 * 9 8 6 11 11 H 1.08997 * 108.15923 * 73.52050 * 10 9 8 12 12 C 1.49844 * 114.52152 * 195.45552 * 10 9 8 13 13 C 1.51336 * 114.41159 * 66.32124 * 12 10 9 14 14 N 1.44538 * 113.15867 * 35.18797 * 13 12 10 15 15 C 1.36943 * 117.26884 * 150.82626 * 14 13 12 16 16 H 1.07994 * 119.99877 * 333.72025 * 15 14 13 17 17 C 1.38810 * 119.99773 * 153.71334 * 15 14 13 18 18 N 1.31614 * 119.99754 * 158.51762 * 17 15 14 19 19 Si 1.86798 * 120.00148 * 338.52640 * 17 15 14 20 20 H 1.48496 * 109.47574 * 86.99410 * 19 17 15 21 21 H 1.48506 * 109.47063 * 206.99615 * 19 17 15 22 22 H 1.48500 * 109.46863 * 326.99114 * 19 17 15 23 23 C 1.44405 * 125.45925 * 330.85224 * 14 13 12 24 24 C 1.52989 * 113.17375 * 34.68075 * 23 14 13 25 25 H 1.09007 * 112.80226 * 84.24670 * 24 23 14 26 26 C 1.47471 * 125.74452 * 0.02861 * 8 6 4 27 27 N 1.47055 * 103.99107 * 359.88905 * 4 3 2 28 28 C 1.33942 * 109.17746 * 0.07330 * 27 4 3 29 29 O 1.21583 * 123.04090 * 179.97438 * 28 27 4 30 30 H 1.09000 * 109.46538 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46730 * 300.06325 * 1 2 3 32 32 H 1.08991 * 109.47180 * 60.06556 * 1 2 3 33 33 H 1.08993 * 110.65967 * 61.48058 * 3 2 1 34 34 H 1.09004 * 110.59224 * 298.56658 * 3 2 1 35 35 H 1.08999 * 110.63043 * 322.95011 * 9 8 6 36 36 H 1.09000 * 110.63272 * 85.82155 * 9 8 6 37 37 H 1.08998 * 108.47070 * 305.09496 * 12 10 9 38 38 H 1.08999 * 108.47094 * 187.54668 * 12 10 9 39 39 H 1.08997 * 108.74887 * 156.13868 * 13 12 10 40 40 H 1.09004 * 108.74640 * 274.36409 * 13 12 10 41 41 H 0.97007 * 120.00244 * 180.02562 * 18 17 15 42 42 H 1.08996 * 108.74281 * 155.63481 * 23 14 13 43 43 H 1.08999 * 108.74032 * 273.84884 * 23 14 13 44 44 H 1.08996 * 110.04176 * 62.75894 * 26 8 6 45 45 H 1.09001 * 110.07724 * 301.32822 * 26 8 6 46 46 H 0.96997 * 125.40577 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3183 1.2018 0.0000 4 6 3.7504 0.6326 -0.0007 5 1 4.2877 0.9477 0.8938 6 6 4.4907 1.0645 -1.2403 7 8 4.5692 0.3160 -2.1914 8 7 5.0655 2.2823 -1.2920 9 6 5.8208 2.8346 -2.4400 10 6 6.7395 3.8810 -1.7927 11 1 7.5306 3.3546 -1.2587 12 6 7.3567 4.8481 -2.7566 13 6 6.3688 5.7749 -3.4315 14 7 5.2741 6.1627 -2.5712 15 6 4.7011 7.3857 -2.7975 16 1 5.2772 8.1752 -3.2569 17 6 3.3797 7.6106 -2.4365 18 7 2.9486 8.8400 -2.2500 19 14 2.2135 6.1682 -2.2153 20 1 2.3138 5.6594 -0.8239 21 1 0.8214 6.6120 -2.4810 22 1 2.5781 5.0867 -3.1654 23 6 4.7343 5.3685 -1.4926 24 6 5.7955 4.5407 -0.7651 25 1 6.3145 5.1057 0.0092 26 6 5.0493 3.2890 -0.2145 27 7 3.5538 -0.8247 0.0018 28 6 2.2412 -1.0916 0.0020 29 8 1.7947 -2.2225 0.0034 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3633 0.5128 -0.8905 33 1 2.1439 1.7972 0.8961 34 1 2.1424 1.7968 -0.8962 35 1 6.4073 2.0542 -2.9250 36 1 5.1448 3.3049 -3.1541 37 1 7.8802 4.2815 -3.5267 38 1 8.0863 5.4535 -2.2189 39 1 6.8954 6.6728 -3.7547 40 1 5.9614 5.2734 -4.3094 41 1 2.0253 8.9972 -1.9973 42 1 4.2553 6.0334 -0.7739 43 1 3.9822 4.6920 -1.8983 44 1 5.5652 2.9034 0.6648 45 1 4.0216 3.5487 0.0395 46 1 4.2622 -1.4873 0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088066299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:52 Heat of formation + Delta-G solvation = -0.365297 kcal Electronic energy + Delta-G solvation = -29042.466777 eV Core-core repulsion = 25161.942005 eV Total energy + Delta-G solvation = -3880.524772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61362 -40.35896 -38.56669 -36.38049 -35.82631 -34.31896 -33.27524 -31.44194 -31.24619 -29.77488 -28.04247 -27.23316 -25.63575 -24.75330 -23.61996 -22.40666 -21.54036 -20.78644 -19.72474 -18.54092 -17.93948 -17.57477 -16.83612 -16.48627 -16.38870 -16.14512 -15.30639 -15.05996 -14.65183 -14.52175 -14.33881 -14.26166 -13.85351 -13.74204 -13.61494 -13.27109 -13.19497 -12.89926 -12.62437 -12.57805 -12.45487 -12.29912 -12.16498 -11.73455 -11.27187 -11.13170 -10.74787 -10.57049 -10.50527 -10.37369 -10.31061 -10.06841 -9.78321 -9.47092 -9.45296 -8.86875 -8.75297 -8.68056 -7.03631 -6.05672 -3.42760 2.14904 2.41866 2.62360 3.02473 3.16883 3.39157 3.41338 3.58620 3.96844 4.09325 4.38816 4.45866 4.47203 4.63229 4.75892 4.83621 4.96142 5.02262 5.12256 5.18026 5.27287 5.28613 5.38360 5.46437 5.49063 5.54239 5.60787 5.62980 5.73766 5.86955 5.90408 6.00264 6.07113 6.22539 6.31133 6.38387 6.44409 6.56294 6.62700 6.78434 6.82549 7.18378 7.33748 7.91213 7.96077 8.24356 8.36166 8.95107 9.66184 9.89313 11.10079 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.004466 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.299191 B = 6267.630945 C = 7626.122393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.636 5.636 3 C 0.104 3.896 4 C 0.109 3.891 5 H 0.116 0.884 6 C 0.516 3.484 7 O -0.526 6.526 8 N -0.612 5.612 9 C 0.113 3.887 10 C -0.085 4.085 11 H 0.070 0.930 12 C -0.116 4.116 13 C 0.161 3.839 14 N -0.599 5.599 15 C -0.274 4.274 16 H 0.086 0.914 17 C 0.027 3.973 18 N -0.904 5.904 19 Si 0.885 3.115 20 H -0.287 1.287 21 H -0.305 1.305 22 H -0.277 1.277 23 C 0.142 3.858 24 C -0.106 4.106 25 H 0.105 0.895 26 C 0.093 3.907 27 N -0.715 5.715 28 C 0.706 3.294 29 O -0.584 6.584 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.012 0.988 41 H 0.263 0.737 42 H 0.069 0.931 43 H 0.014 0.986 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 -12.509 8.082 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.375 5.375 3 C -0.020 4.020 4 C -0.002 4.002 5 H 0.134 0.866 6 C 0.302 3.698 7 O -0.402 6.402 8 N -0.346 5.346 9 C -0.008 4.008 10 C -0.104 4.104 11 H 0.089 0.911 12 C -0.154 4.154 13 C 0.035 3.965 14 N -0.322 5.322 15 C -0.403 4.403 16 H 0.104 0.896 17 C -0.172 4.172 18 N -0.547 5.547 19 Si 0.716 3.284 20 H -0.214 1.214 21 H -0.233 1.233 22 H -0.203 1.203 23 C 0.016 3.984 24 C -0.126 4.126 25 H 0.123 0.877 26 C -0.030 4.030 27 N -0.376 5.376 28 C 0.407 3.593 29 O -0.462 6.462 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.030 0.970 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.032 0.968 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 3.403 -13.492 7.595 15.853 hybrid contribution -0.411 -0.695 0.100 0.814 sum 2.992 -14.187 7.695 16.415 Atomic orbital electron populations 1.21459 0.75208 1.04062 1.01681 1.47073 1.06555 1.05468 1.78446 1.22347 0.86071 0.89080 1.04509 1.21793 0.97258 0.83253 0.97883 0.86604 1.20318 0.79555 0.80726 0.89223 1.90750 1.59632 1.52399 1.37415 1.48753 1.53493 1.14413 1.17959 1.22244 0.94173 0.95651 0.88776 1.21120 0.96870 0.95479 0.96975 0.91141 1.20684 0.99090 0.97276 0.98383 1.19964 0.88427 0.96296 0.91831 1.43052 1.37446 1.19421 1.32299 1.19041 0.94299 0.87730 1.39196 0.89601 1.25243 0.96868 0.95803 0.99294 1.69842 1.16822 1.19255 1.48747 0.87070 0.80269 0.83431 0.77590 1.21446 1.23281 1.20325 1.20906 0.93301 0.93785 0.90428 1.22866 0.97202 0.94514 0.98035 0.87669 1.22690 1.01506 0.88918 0.89854 1.44815 1.07006 1.06062 1.79741 1.15771 0.81648 0.84631 0.77274 1.90952 1.75807 1.20842 1.58636 0.89418 0.91798 0.91888 0.88380 0.89446 0.90452 0.90371 0.91819 0.91590 0.92874 0.96974 0.92668 0.91289 0.96841 0.90974 0.90803 0.72429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.11 11.22 59.85 0.67 1.78 16 2 N -0.64 -7.64 3.37 -186.47 -0.63 -8.26 16 3 C 0.10 1.06 7.34 -2.98 -0.02 1.04 16 4 C 0.11 1.13 3.54 -68.20 -0.24 0.88 16 5 H 0.12 0.81 7.67 -51.93 -0.40 0.41 16 6 C 0.52 7.03 6.97 -10.99 -0.08 6.96 16 7 O -0.53 -9.26 16.86 5.56 0.09 -9.16 16 8 N -0.61 -7.98 3.33 -169.53 -0.56 -8.54 16 9 C 0.11 1.60 5.84 -2.87 -0.02 1.59 16 10 C -0.09 -1.09 2.65 -91.19 -0.24 -1.33 16 11 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 12 C -0.12 -1.55 5.46 -29.14 -0.16 -1.71 16 13 C 0.16 2.87 5.95 -5.93 -0.04 2.84 16 14 N -0.60 -12.94 2.98 -177.44 -0.53 -13.47 16 15 C -0.27 -7.20 9.75 -15.06 -0.15 -7.35 16 16 H 0.09 2.42 7.91 -52.49 -0.42 2.01 16 17 C 0.03 0.75 5.08 -17.43 -0.09 0.66 16 18 N -0.90 -26.46 13.97 55.49 0.78 -25.68 16 19 Si 0.89 21.15 23.88 -169.99 -4.06 17.09 16 20 H -0.29 -6.22 6.55 56.52 0.37 -5.85 16 21 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 22 H -0.28 -6.74 6.75 56.52 0.38 -6.36 16 23 C 0.14 2.70 2.74 -5.16 -0.01 2.69 16 24 C -0.11 -1.45 3.99 -88.44 -0.35 -1.80 16 25 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 26 C 0.09 1.04 5.41 -2.03 -0.01 1.03 16 27 N -0.71 -8.54 5.62 -59.33 -0.33 -8.88 16 28 C 0.71 10.21 8.60 -88.40 -0.76 9.45 16 29 O -0.58 -10.46 17.29 5.29 0.09 -10.37 16 30 H 0.09 0.89 7.52 -51.93 -0.39 0.50 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.01 7.73 -51.93 -0.40 0.61 16 35 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 36 H 0.08 1.33 7.10 -51.93 -0.37 0.96 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.96 7.81 -51.93 -0.41 0.56 16 40 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.07 1.46 5.66 -51.93 -0.29 1.16 16 43 H 0.01 0.29 3.98 -51.93 -0.21 0.08 16 44 H 0.07 0.57 8.03 -51.93 -0.42 0.15 16 45 H 0.07 0.81 7.74 -51.93 -0.40 0.41 16 46 H 0.43 4.61 8.96 -40.82 -0.37 4.25 16 LS Contribution 353.88 15.07 5.33 5.33 Total: -1.00 -35.27 353.88 -8.37 -43.63 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.05 Total: 1.59 kcal Atomic # 6 Polarization: 18.21 SS G_CDS: -1.50 Total: 16.71 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: -1.28 Total: -64.83 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.19 Total: -19.53 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.06 Total: 17.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.27 -8.37 -43.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088066299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.268 kcal (2) G-P(sol) polarization free energy of solvation -35.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds