Wall clock time and date at job start Fri Apr 10 2020 18:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46674 * 2 1 4 4 C 1.50707 * 109.47157 * 119.99534 * 2 1 3 5 5 N 1.31073 * 126.65801 * 299.98450 * 4 2 1 6 6 N 1.28839 * 107.98794 * 180.02562 * 5 4 2 7 7 N 1.28744 * 109.39875 * 359.97438 * 6 5 4 8 8 N 1.29019 * 108.80455 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.43604 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47623 * 90.02147 * 9 8 7 11 11 O 1.21290 * 119.99651 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00233 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99758 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.64229 * 325.69103 * 13 12 10 15 15 C 1.55152 * 110.72329 * 88.83856 * 13 12 10 16 16 C 1.55121 * 101.48426 * 153.73184 * 15 13 12 17 17 N 1.47425 * 104.94724 * 323.22261 * 16 15 13 18 18 C 1.36935 * 125.65312 * 204.03859 * 17 16 15 19 19 H 1.07994 * 119.99954 * 179.97438 * 18 17 16 20 20 C 1.38809 * 119.99868 * 359.96239 * 18 17 16 21 21 N 1.31622 * 120.00176 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00056 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46926 * 59.99980 * 22 20 18 24 24 H 1.48502 * 109.47106 * 179.97438 * 22 20 18 25 25 H 1.48490 * 109.46973 * 299.99805 * 22 20 18 26 26 C 1.47023 * 108.69778 * 24.00304 * 17 16 15 27 27 H 1.09005 * 109.88234 * 239.52206 * 26 17 16 28 28 C 1.52997 * 110.01128 * 118.43335 * 26 17 16 29 29 H 1.09007 * 109.46747 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47298 * 299.99624 * 1 2 3 31 31 H 1.08995 * 109.47207 * 60.00416 * 1 2 3 32 32 H 1.08991 * 109.47098 * 239.99640 * 2 1 3 33 33 H 1.09004 * 109.46683 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.46963 * 299.99733 * 3 2 1 35 35 H 1.09004 * 109.47036 * 60.00001 * 3 2 1 36 36 H 1.09004 * 109.47433 * 210.02564 * 9 8 7 37 37 H 1.09010 * 109.47042 * 330.02023 * 9 8 7 38 38 H 0.96995 * 119.99892 * 359.97438 * 12 10 9 39 39 H 1.08995 * 111.00886 * 271.93585 * 15 13 12 40 40 H 1.08999 * 111.00145 * 35.79159 * 15 13 12 41 41 H 1.09004 * 110.42160 * 204.29751 * 16 15 13 42 42 H 1.08995 * 110.30084 * 82.09248 * 16 15 13 43 43 H 0.97000 * 120.00119 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.47193 * 302.10953 * 28 26 17 45 45 H 1.09000 * 109.47729 * 62.11007 * 28 26 17 46 46 H 1.08996 * 109.47517 * 182.11255 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2306 5 7 1.7978 -0.3780 2.4766 6 7 2.3995 -1.2280 3.2351 7 7 3.0113 -2.0943 2.5053 8 7 2.8092 -1.8090 1.2634 9 6 3.3279 -2.5428 0.1064 10 6 2.3456 -3.6145 -0.2904 11 8 1.3135 -3.7516 0.3318 12 7 2.6140 -4.4207 -1.3366 13 6 1.6587 -5.4622 -1.7226 14 1 1.1590 -5.8701 -0.8440 15 6 0.6225 -4.9085 -2.7359 16 6 0.2119 -6.1982 -3.4938 17 7 1.4518 -6.9890 -3.5979 18 6 1.7119 -7.9446 -4.5436 19 1 2.6552 -8.4704 -4.5347 20 6 0.7631 -8.2376 -5.5135 21 7 -0.3868 -7.5973 -5.5239 22 14 1.1183 -9.5407 -6.8040 23 1 1.3635 -10.8444 -6.1366 24 1 -0.0466 -9.6638 -7.7168 25 1 2.3199 -9.1501 -7.5841 26 6 2.3630 -6.5811 -2.5186 27 1 3.2943 -6.2049 -2.9421 28 6 2.6522 -7.7701 -1.6002 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 3.4705 -1.8542 -0.7265 37 1 4.2819 -3.0022 0.3654 38 1 3.4392 -4.3108 -1.8343 39 1 -0.2303 -4.4666 -2.2207 40 1 1.0837 -4.1892 -3.4127 41 1 -0.1655 -5.9522 -4.4864 42 1 -0.5411 -6.7461 -2.9275 43 1 -1.0500 -7.8023 -6.2014 44 1 1.7154 -8.1523 -1.1947 45 1 3.1494 -8.5560 -2.1688 46 1 3.2979 -7.4493 -0.7828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088908268.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:10 Heat of formation + Delta-G solvation = 103.991117 kcal Electronic energy + Delta-G solvation = -27909.463638 eV Core-core repulsion = 24065.756851 eV Total energy + Delta-G solvation = -3843.706787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.33736 -40.11462 -37.86635 -36.43693 -35.52932 -34.35290 -32.28047 -31.62490 -30.54643 -29.70814 -28.38555 -27.54752 -25.01874 -24.60956 -24.12720 -23.38817 -21.36004 -20.74786 -20.41350 -19.87383 -18.05995 -17.88351 -16.90579 -16.45495 -16.20919 -15.66722 -15.56083 -14.85217 -14.80971 -14.14240 -14.06613 -13.72783 -13.59547 -13.48175 -13.11296 -12.90169 -12.53885 -12.35012 -12.26735 -12.12132 -11.97137 -11.71009 -11.68432 -11.52023 -11.49215 -11.27622 -11.12524 -10.95819 -10.94018 -10.73673 -10.60132 -10.22429 -10.19912 -9.99894 -9.87567 -9.68690 -8.96725 -8.75160 -6.99705 -5.75860 -3.19403 1.02219 1.60898 2.13877 2.21846 2.90079 3.33089 3.38017 3.39257 3.61168 3.86790 4.15025 4.23744 4.37777 4.41283 4.60877 4.72608 4.87740 5.08782 5.23251 5.28718 5.29091 5.37396 5.38518 5.46823 5.49783 5.53793 5.56811 5.63979 5.82327 5.89989 5.96226 5.97244 6.01354 6.13734 6.18454 6.33611 6.41945 6.53539 6.71078 6.91766 7.26958 7.40268 7.51054 7.73395 7.91108 8.23571 8.48740 9.09700 9.70509 10.33088 11.27488 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.024270 B = 0.002755 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.387291 B =10159.288109 C =10801.193322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.143 4.143 4 C 0.204 3.796 5 N -0.301 5.301 6 N -0.075 5.075 7 N -0.086 5.086 8 N -0.293 5.293 9 C 0.091 3.909 10 C 0.498 3.502 11 O -0.520 6.520 12 N -0.704 5.704 13 C 0.135 3.865 14 H 0.095 0.905 15 C -0.152 4.152 16 C 0.153 3.847 17 N -0.594 5.594 18 C -0.224 4.224 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.915 3.085 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.157 3.843 27 H 0.037 0.963 28 C -0.157 4.157 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.402 0.598 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.015 0.985 43 H 0.254 0.746 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.160 15.556 6.494 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.202 4.202 4 C -0.074 4.074 5 N -0.150 5.150 6 N -0.068 5.068 7 N -0.071 5.071 8 N -0.094 5.094 9 C -0.036 4.036 10 C 0.280 3.720 11 O -0.395 6.395 12 N -0.355 5.355 13 C 0.031 3.969 14 H 0.113 0.887 15 C -0.192 4.192 16 C 0.028 3.972 17 N -0.320 5.320 18 C -0.352 4.352 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.745 3.255 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.211 1.211 26 C 0.048 3.952 27 H 0.054 0.946 28 C -0.216 4.216 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.237 0.763 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.128 0.872 42 H 0.033 0.967 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.406 15.160 8.188 18.754 hybrid contribution 0.650 -0.964 -1.813 2.154 sum 8.056 14.196 6.375 17.523 Atomic orbital electron populations 1.21833 0.91600 1.03470 1.03373 1.19809 0.98023 0.95954 0.89525 1.21853 1.01117 0.93454 1.03731 1.26089 0.94550 0.88799 0.97991 1.74942 1.19787 1.21899 0.98348 1.78595 1.06946 0.98858 1.22437 1.78885 1.20329 1.20697 0.87223 1.47846 1.34699 1.19997 1.06836 1.22033 0.99343 0.95837 0.86349 1.20192 0.87412 0.82989 0.81377 1.90830 1.25999 1.69985 1.52672 1.45958 1.24100 1.34237 1.31204 1.22280 0.89511 0.87094 0.98046 0.88748 1.23438 0.97799 1.00561 0.97409 1.21995 0.87914 0.86384 1.00938 1.44467 1.14112 1.43897 1.29479 1.18964 1.00645 1.11826 1.03803 0.90445 1.24792 0.96133 1.00030 0.99426 1.69767 1.07013 1.43680 1.36393 0.86152 0.77033 0.81162 0.81122 1.21172 1.21529 1.21122 1.20973 0.93379 0.91811 0.88994 0.94562 1.22257 1.00896 0.99852 0.98631 0.91712 0.91121 0.90793 0.89066 0.92442 0.90709 0.90961 0.84336 0.83952 0.76342 0.91926 0.91838 0.87181 0.96718 0.93531 0.92881 0.92547 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16 2 C -0.01 -0.09 3.26 -91.77 -0.30 -0.39 16 3 C -0.14 -0.87 9.18 37.16 0.34 -0.53 16 4 C 0.20 2.37 6.64 -155.43 -1.03 1.33 16 5 N -0.30 -4.34 12.36 32.70 0.40 -3.94 16 6 N -0.07 -1.19 13.43 60.35 0.81 -0.38 16 7 N -0.09 -1.26 13.29 60.35 0.80 -0.45 16 8 N -0.29 -3.41 2.83 -59.44 -0.17 -3.58 16 9 C 0.09 0.68 6.56 -5.20 -0.03 0.65 16 10 C 0.50 5.83 7.90 -10.99 -0.09 5.75 16 11 O -0.52 -8.74 16.12 5.55 0.09 -8.65 16 12 N -0.70 -7.92 5.19 -52.03 -0.27 -8.19 16 13 C 0.13 2.15 2.79 -66.10 -0.18 1.96 16 14 H 0.09 1.70 7.33 -51.93 -0.38 1.32 16 15 C -0.15 -2.69 6.79 -24.47 -0.17 -2.85 16 16 C 0.15 3.48 5.89 -2.41 -0.01 3.46 16 17 N -0.59 -13.83 3.13 -162.44 -0.51 -14.34 16 18 C -0.22 -5.79 9.90 -15.06 -0.15 -5.94 16 19 H 0.08 1.93 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -25.56 10.09 55.49 0.56 -25.00 16 22 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.16 2.83 3.48 -66.95 -0.23 2.60 16 27 H 0.04 0.62 7.70 -51.93 -0.40 0.22 16 28 C -0.16 -2.70 9.14 37.16 0.34 -2.36 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.55 6.85 -51.93 -0.36 0.19 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.14 0.45 7.13 -51.93 -0.37 0.08 16 37 H 0.14 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.40 3.18 8.34 -40.82 -0.34 2.84 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.11 2.83 5.87 -51.93 -0.31 2.52 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.25 6.90 8.31 -40.82 -0.34 6.57 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 1.01 8.05 -51.93 -0.42 0.59 16 46 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 378.61 15.07 5.71 5.71 Total: -1.00 -34.31 378.61 -6.06 -40.37 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.19 Total: -0.03 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.27 Total: 2.46 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 1.63 Total: -55.88 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.31 -6.06 -40.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088908268.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.360 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds