Wall clock time and date at job start Fri Apr 10 2020 18:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46674 * 2 1 4 4 C 1.50707 * 109.47157 * 119.99534 * 2 1 3 5 5 N 1.31073 * 126.65801 * 299.98450 * 4 2 1 6 6 N 1.28839 * 107.98794 * 180.02562 * 5 4 2 7 7 N 1.28744 * 109.39875 * 359.97438 * 6 5 4 8 8 N 1.29019 * 108.80455 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.43604 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47623 * 90.02147 * 9 8 7 11 11 O 1.21290 * 119.99651 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00233 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99758 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.64229 * 325.69103 * 13 12 10 15 15 C 1.55152 * 110.72329 * 88.83856 * 13 12 10 16 16 C 1.55121 * 101.48426 * 153.73184 * 15 13 12 17 17 N 1.47425 * 104.94724 * 323.22261 * 16 15 13 18 18 C 1.36935 * 125.65312 * 204.03859 * 17 16 15 19 19 H 1.07994 * 119.99954 * 179.97438 * 18 17 16 20 20 C 1.38809 * 119.99868 * 359.96239 * 18 17 16 21 21 N 1.31622 * 120.00176 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00056 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46926 * 59.99980 * 22 20 18 24 24 H 1.48502 * 109.47106 * 179.97438 * 22 20 18 25 25 H 1.48490 * 109.46973 * 299.99805 * 22 20 18 26 26 C 1.47023 * 108.69778 * 24.00304 * 17 16 15 27 27 H 1.09005 * 109.88234 * 239.52206 * 26 17 16 28 28 C 1.52997 * 110.01128 * 118.43335 * 26 17 16 29 29 H 1.09007 * 109.46747 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47298 * 299.99624 * 1 2 3 31 31 H 1.08995 * 109.47207 * 60.00416 * 1 2 3 32 32 H 1.08991 * 109.47098 * 239.99640 * 2 1 3 33 33 H 1.09004 * 109.46683 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.46963 * 299.99733 * 3 2 1 35 35 H 1.09004 * 109.47036 * 60.00001 * 3 2 1 36 36 H 1.09004 * 109.47433 * 210.02564 * 9 8 7 37 37 H 1.09010 * 109.47042 * 330.02023 * 9 8 7 38 38 H 0.96995 * 119.99892 * 359.97438 * 12 10 9 39 39 H 1.08995 * 111.00886 * 271.93585 * 15 13 12 40 40 H 1.08999 * 111.00145 * 35.79159 * 15 13 12 41 41 H 1.09004 * 110.42160 * 204.29751 * 16 15 13 42 42 H 1.08995 * 110.30084 * 82.09248 * 16 15 13 43 43 H 0.97000 * 120.00119 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.47193 * 302.10953 * 28 26 17 45 45 H 1.09000 * 109.47729 * 62.11007 * 28 26 17 46 46 H 1.08996 * 109.47517 * 182.11255 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2306 5 7 1.7978 -0.3780 2.4766 6 7 2.3995 -1.2280 3.2351 7 7 3.0113 -2.0943 2.5053 8 7 2.8092 -1.8090 1.2634 9 6 3.3279 -2.5428 0.1064 10 6 2.3456 -3.6145 -0.2904 11 8 1.3135 -3.7516 0.3318 12 7 2.6140 -4.4207 -1.3366 13 6 1.6587 -5.4622 -1.7226 14 1 1.1590 -5.8701 -0.8440 15 6 0.6225 -4.9085 -2.7359 16 6 0.2119 -6.1982 -3.4938 17 7 1.4518 -6.9890 -3.5979 18 6 1.7119 -7.9446 -4.5436 19 1 2.6552 -8.4704 -4.5347 20 6 0.7631 -8.2376 -5.5135 21 7 -0.3868 -7.5973 -5.5239 22 14 1.1183 -9.5407 -6.8040 23 1 1.3635 -10.8444 -6.1366 24 1 -0.0466 -9.6638 -7.7168 25 1 2.3199 -9.1501 -7.5841 26 6 2.3630 -6.5811 -2.5186 27 1 3.2943 -6.2049 -2.9421 28 6 2.6522 -7.7701 -1.6002 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 3.4705 -1.8542 -0.7265 37 1 4.2819 -3.0022 0.3654 38 1 3.4392 -4.3108 -1.8343 39 1 -0.2303 -4.4666 -2.2207 40 1 1.0837 -4.1892 -3.4127 41 1 -0.1655 -5.9522 -4.4864 42 1 -0.5411 -6.7461 -2.9275 43 1 -1.0500 -7.8023 -6.2014 44 1 1.7154 -8.1523 -1.1947 45 1 3.1494 -8.5560 -2.1688 46 1 3.2979 -7.4493 -0.7828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088908268.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:09 Heat of formation + Delta-G solvation = 79.234057 kcal Electronic energy + Delta-G solvation = -27910.537185 eV Core-core repulsion = 24065.756851 eV Total energy + Delta-G solvation = -3844.780334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.28177 -41.20214 -39.31549 -37.15005 -36.43984 -35.71446 -33.94483 -32.54547 -32.06751 -30.98071 -29.71165 -28.10253 -26.51852 -25.83310 -25.47058 -24.40318 -22.46055 -21.81407 -21.65056 -21.27477 -19.02773 -18.82534 -18.62749 -17.55939 -17.17567 -16.82900 -16.46119 -16.38295 -15.73384 -15.52480 -15.43258 -14.96905 -14.49317 -14.36650 -14.18624 -14.01007 -13.92657 -13.61855 -13.25573 -13.19017 -13.08619 -12.94467 -12.73379 -12.67301 -12.61349 -12.48307 -12.29235 -12.26954 -12.24783 -12.12374 -12.03316 -11.88126 -11.57634 -11.46345 -11.20512 -10.94419 -10.71604 -10.15344 -8.89539 -7.74498 -5.19323 0.09946 0.85229 1.14552 1.32879 1.49593 1.51730 1.57787 1.96259 2.52187 2.89011 3.16959 3.34553 3.38572 3.62325 3.64609 3.83479 3.91824 3.93734 4.02827 4.06869 4.19603 4.21392 4.39128 4.50301 4.61693 4.65665 4.65807 4.78509 4.79396 4.84378 4.91173 4.92024 4.96777 5.02419 5.10124 5.15787 5.28963 5.32543 5.37133 5.51062 5.56707 5.60578 5.81358 6.31672 6.36920 7.04640 7.11967 7.49714 7.80055 8.42393 9.26998 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.024270 B = 0.002755 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.387291 B =10159.288109 C =10801.193322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.012 4.012 3 C -0.138 4.138 4 C 0.210 3.790 5 N -0.330 5.330 6 N -0.108 5.108 7 N -0.103 5.103 8 N -0.291 5.291 9 C 0.089 3.911 10 C 0.502 3.498 11 O -0.575 6.575 12 N -0.687 5.687 13 C 0.154 3.846 14 H 0.072 0.928 15 C -0.135 4.135 16 C 0.155 3.845 17 N -0.613 5.613 18 C -0.227 4.227 19 H 0.086 0.914 20 C -0.067 4.067 21 N -0.950 5.950 22 Si 0.975 3.025 23 H -0.283 1.283 24 H -0.299 1.299 25 H -0.273 1.273 26 C 0.152 3.848 27 H 0.063 0.937 28 C -0.150 4.150 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.194 0.806 37 H 0.179 0.821 38 H 0.424 0.576 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.079 0.921 42 H -0.023 1.023 43 H 0.245 0.755 44 H 0.029 0.971 45 H 0.047 0.953 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.146 16.995 5.448 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 C -0.197 4.197 4 C -0.068 4.068 5 N -0.179 5.179 6 N -0.102 5.102 7 N -0.089 5.089 8 N -0.092 5.092 9 C -0.034 4.034 10 C 0.287 3.713 11 O -0.454 6.454 12 N -0.340 5.340 13 C 0.048 3.952 14 H 0.090 0.910 15 C -0.174 4.174 16 C 0.030 3.970 17 N -0.339 5.339 18 C -0.356 4.356 19 H 0.104 0.896 20 C -0.259 4.259 21 N -0.600 5.600 22 Si 0.804 3.196 23 H -0.209 1.209 24 H -0.225 1.225 25 H -0.199 1.199 26 C 0.045 3.955 27 H 0.081 0.919 28 C -0.209 4.209 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.140 0.860 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.211 0.789 37 H 0.197 0.803 38 H 0.263 0.737 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.096 0.904 42 H -0.005 1.005 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.475 16.612 7.149 20.899 hybrid contribution -0.288 -1.426 -1.473 2.070 sum 10.187 15.186 5.676 19.147 Atomic orbital electron populations 1.21823 0.92456 1.01784 1.04079 1.20117 0.97221 0.97158 0.88832 1.21846 1.01738 0.91956 1.04117 1.26760 0.93343 0.88517 0.98227 1.74857 1.20628 1.22562 0.99803 1.78555 1.08155 0.99803 1.23668 1.78773 1.20722 1.20763 0.88614 1.48107 1.34335 1.19971 1.06800 1.22534 0.98598 0.95631 0.86672 1.20850 0.87208 0.83084 0.80207 1.90837 1.28691 1.71493 1.54330 1.45605 1.23973 1.32915 1.31466 1.21709 0.89665 0.87511 0.96336 0.90953 1.23205 0.98553 0.98164 0.97498 1.21714 0.87555 0.88411 0.99334 1.44705 1.14991 1.43634 1.30539 1.19343 1.00637 1.11797 1.03788 0.89607 1.25572 0.96306 1.02332 1.01740 1.70024 1.07823 1.45229 1.36953 0.85193 0.76691 0.78918 0.78772 1.20930 1.22546 1.19862 1.21205 0.93437 0.92742 0.88082 0.91908 1.22164 1.00297 0.99195 0.99274 0.94477 0.92386 0.88200 0.86022 0.91402 0.88337 0.92588 0.78903 0.80329 0.73701 0.91887 0.89931 0.90352 1.00462 0.94489 0.95207 0.93371 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.18 71.98 0.66 -1.59 16 2 C -0.01 -0.15 3.26 -11.54 -0.04 -0.19 16 3 C -0.14 -1.23 9.18 71.98 0.66 -0.57 16 4 C 0.21 4.47 6.64 138.14 0.92 5.39 16 5 N -0.33 -9.44 12.36 -50.45 -0.62 -10.06 16 6 N -0.11 -3.46 13.43 37.01 0.50 -2.96 16 7 N -0.10 -2.89 13.29 37.02 0.49 -2.40 16 8 N -0.29 -6.00 2.83 -341.96 -0.97 -6.97 16 9 C 0.09 0.91 6.56 85.63 0.56 1.47 16 10 C 0.50 10.04 7.90 87.66 0.69 10.73 16 11 O -0.57 -18.59 16.12 -3.06 -0.05 -18.64 16 12 N -0.69 -12.73 5.19 -436.91 -2.27 -15.00 16 13 C 0.15 4.61 2.79 46.18 0.13 4.74 16 14 H 0.07 2.56 7.33 -2.39 -0.02 2.54 16 15 C -0.13 -4.62 6.79 32.06 0.22 -4.40 16 16 C 0.16 7.27 5.89 86.93 0.51 7.78 16 17 N -0.61 -28.44 3.13 -667.85 -2.09 -30.53 16 18 C -0.23 -11.66 9.90 84.03 0.83 -10.83 16 19 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 20 C -0.07 -3.61 5.49 84.86 0.47 -3.14 16 21 N -0.95 -54.52 10.09 21.65 0.22 -54.30 16 22 Si 0.98 43.54 29.55 68.60 2.03 45.57 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 26 C 0.15 5.19 3.48 45.34 0.16 5.34 16 27 H 0.06 1.87 7.70 -2.38 -0.02 1.85 16 28 C -0.15 -4.91 9.14 71.98 0.66 -4.26 16 29 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.12 0.82 6.85 -2.39 -0.02 0.81 16 33 H 0.07 0.48 8.14 -2.38 -0.02 0.47 16 34 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.19 -0.12 7.13 -2.39 -0.02 -0.14 16 37 H 0.18 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.42 4.33 8.34 -92.71 -0.77 3.56 16 39 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.08 4.19 5.87 -2.39 -0.01 4.17 16 42 H -0.02 -1.20 8.14 -2.39 -0.02 -1.21 16 43 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 44 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.05 1.64 8.05 -2.39 -0.02 1.62 16 46 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -81.17 378.61 3.88 -77.29 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 0.22 Total: 7.52 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 6.43 Total: 10.48 kcal Atomic # 7 Polarization: -117.48 SS G_CDS: -4.74 Total: -122.22 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.05 Total: -18.64 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -81.17 3.88 -77.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088908268.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.528 kcal (2) G-P(sol) polarization free energy of solvation -81.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds