Wall clock time and date at job start Fri Apr 10 2020 18:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47249 * 2 1 4 4 C 1.34949 * 126.03808 * 125.30906 * 3 2 1 5 5 C 1.35316 * 107.74634 * 180.15175 * 4 3 2 6 6 C 1.39871 * 107.91627 * 359.60514 * 5 4 3 7 7 C 1.50703 * 125.89715 * 180.26301 * 6 5 4 8 8 C 1.50699 * 109.46848 * 125.00401 * 7 6 5 9 9 O 1.21276 * 120.00172 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00140 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.46001 * 325.02283 * 11 10 8 13 13 C 1.53042 * 109.46323 * 85.00030 * 11 10 8 14 14 C 1.53193 * 109.31582 * 181.38724 * 13 11 10 15 15 N 1.46928 * 108.77186 * 305.36117 * 14 13 11 16 16 C 1.36938 * 120.62738 * 233.62742 * 15 14 13 17 17 H 1.07997 * 119.99423 * 152.62288 * 16 15 14 18 18 C 1.38812 * 120.00199 * 332.62882 * 16 15 14 19 19 N 1.31621 * 120.00185 * 159.34449 * 18 16 15 20 20 Si 1.86803 * 120.00057 * 339.33788 * 18 16 15 21 21 H 1.48505 * 109.46868 * 92.96475 * 20 18 16 22 22 H 1.48497 * 109.47419 * 212.96611 * 20 18 16 23 23 H 1.48505 * 109.46924 * 332.96747 * 20 18 16 24 24 C 1.46921 * 118.73844 * 53.60814 * 15 14 13 25 25 C 1.53047 * 109.46178 * 205.06595 * 11 10 8 26 26 H 1.09001 * 109.49391 * 298.56390 * 25 11 10 27 27 O 1.42896 * 109.49852 * 58.66090 * 25 11 10 28 28 N 1.30836 * 108.20777 * 0.24819 * 6 5 4 29 29 H 1.09007 * 109.47032 * 300.00174 * 1 2 3 30 30 H 1.08995 * 109.47111 * 59.99847 * 1 2 3 31 31 H 1.08996 * 109.47319 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47297 * 239.99840 * 2 1 3 33 33 H 1.09002 * 109.47008 * 119.99463 * 2 1 3 34 34 H 1.08000 * 126.12816 * 359.97438 * 4 3 2 35 35 H 1.07996 * 126.04136 * 179.87468 * 5 4 3 36 36 H 1.08995 * 109.47600 * 245.00465 * 7 6 5 37 37 H 1.09003 * 109.46764 * 5.00746 * 7 6 5 38 38 H 0.97003 * 119.99852 * 359.97438 * 10 8 7 39 39 H 1.09009 * 109.49225 * 301.33420 * 13 11 10 40 40 H 1.09001 * 109.49856 * 61.39611 * 13 11 10 41 41 H 1.09001 * 109.58462 * 65.14597 * 14 13 11 42 42 H 1.09001 * 109.58363 * 185.43125 * 14 13 11 43 43 H 0.97000 * 120.00110 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.58457 * 66.17927 * 24 15 14 45 45 H 1.09003 * 109.58323 * 186.45747 * 24 15 14 46 46 H 0.96701 * 114.00139 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8777 1.9195 0.8905 5 6 3.0719 3.2136 0.5459 6 6 2.3121 3.4725 -0.5995 7 6 2.2350 4.7885 -1.3299 8 6 2.5914 4.5802 -2.7792 9 8 2.8800 3.4724 -3.1795 10 7 2.5903 5.6252 -3.6303 11 6 2.9362 5.4227 -5.0394 12 1 3.7042 4.6533 -5.1178 13 6 1.6910 4.9808 -5.8117 14 6 2.0640 4.7366 -7.2773 15 7 2.7065 5.9460 -7.8096 16 6 2.2404 6.5379 -8.9530 17 1 2.3808 7.5974 -9.1084 18 6 1.5873 5.7763 -9.9124 19 7 0.7968 6.3587 -10.7889 20 14 1.8306 3.9248 -9.9595 21 1 0.7667 3.2653 -9.1605 22 1 1.7590 3.4517 -11.3653 23 1 3.1595 3.5855 -9.3901 24 6 3.8583 6.5083 -7.0914 25 6 3.4653 6.7327 -5.6279 26 1 2.6892 7.4960 -5.5726 27 8 4.6098 7.1605 -4.8869 28 7 1.6801 2.3749 -0.9276 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.3273 1.4097 1.7297 35 1 3.7053 3.9202 1.0614 36 1 1.2223 5.1852 -1.2581 37 1 2.9343 5.4943 -0.8815 38 1 2.3598 6.5114 -3.3100 39 1 1.3012 4.0602 -5.3772 40 1 0.9314 5.7605 -5.7541 41 1 2.7552 3.8964 -7.3433 42 1 1.1641 4.5155 -7.8513 43 1 0.3401 5.8264 -11.4590 44 1 4.6958 5.8126 -7.1424 45 1 4.1437 7.4575 -7.5450 46 1 4.9981 7.9870 -5.2053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090277396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:47 Heat of formation + Delta-G solvation = 19.092059 kcal Electronic energy + Delta-G solvation = -27536.927811 eV Core-core repulsion = 23657.246773 eV Total energy + Delta-G solvation = -3879.681038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.31105 -39.69497 -38.05328 -35.61439 -34.89701 -34.27558 -32.21973 -31.67303 -30.30154 -29.77996 -29.18002 -28.03494 -25.05326 -23.50756 -22.71207 -22.03525 -21.24711 -20.54764 -19.97858 -19.28681 -17.32399 -17.17989 -16.77695 -16.57779 -16.06449 -15.55077 -15.10952 -14.94467 -14.53525 -14.47043 -14.06853 -13.98299 -13.62881 -13.34624 -13.31531 -12.86492 -12.77695 -12.58383 -12.45680 -12.32048 -12.29499 -12.00566 -11.89960 -11.60350 -11.51062 -11.15150 -10.96303 -10.55924 -10.18560 -10.11344 -9.92954 -9.83654 -9.57556 -9.51266 -9.26437 -8.71419 -8.65414 -8.61168 -7.05223 -5.99095 -3.36634 1.84063 2.37591 2.65233 2.90832 3.33815 3.46369 3.49701 3.53756 4.20197 4.33169 4.51224 4.59610 4.60759 4.70252 4.89521 4.94101 4.99182 5.09694 5.20680 5.27618 5.31530 5.37006 5.43535 5.45726 5.56859 5.60749 5.69425 5.80227 5.81118 5.85618 5.94207 6.09658 6.28806 6.34966 6.44511 6.54858 6.55591 6.62337 6.79522 6.85089 6.92765 7.69973 7.75473 7.80331 7.93713 8.27270 8.50141 8.87092 9.66633 10.02360 11.16332 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.003029 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.238597 B = 9242.370104 C =10508.897472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.131 3.869 3 N -0.374 5.374 4 C 0.046 3.954 5 C -0.267 4.267 6 C 0.083 3.917 7 C -0.059 4.059 8 C 0.514 3.486 9 O -0.527 6.527 10 N -0.719 5.719 11 C 0.164 3.836 12 H 0.087 0.913 13 C -0.140 4.140 14 C 0.126 3.874 15 N -0.602 5.602 16 C -0.265 4.265 17 H 0.087 0.913 18 C 0.027 3.973 19 N -0.906 5.906 20 Si 0.881 3.119 21 H -0.287 1.287 22 H -0.302 1.302 23 H -0.269 1.269 24 C 0.124 3.876 25 C 0.080 3.920 26 H 0.061 0.939 27 O -0.569 6.569 28 N -0.257 5.257 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.170 0.830 35 H 0.146 0.854 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.397 0.603 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.030 0.970 42 H 0.078 0.922 43 H 0.264 0.736 44 H 0.033 0.967 45 H 0.069 0.931 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.867 -5.260 25.721 26.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 N -0.157 5.157 4 C -0.099 4.099 5 C -0.296 4.296 6 C -0.085 4.085 7 C -0.101 4.101 8 C 0.299 3.701 9 O -0.402 6.402 10 N -0.369 5.369 11 C 0.060 3.940 12 H 0.105 0.895 13 C -0.180 4.180 14 C 0.000 4.000 15 N -0.327 5.327 16 C -0.393 4.393 17 H 0.104 0.896 18 C -0.173 4.173 19 N -0.548 5.548 20 Si 0.711 3.289 21 H -0.214 1.214 22 H -0.230 1.230 23 H -0.194 1.194 24 C -0.003 4.003 25 C 0.019 3.981 26 H 0.079 0.921 27 O -0.374 6.374 28 N -0.079 5.079 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.188 0.812 35 H 0.164 0.836 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.231 0.769 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.048 0.952 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.001 -7.349 24.791 25.935 hybrid contribution 0.672 0.198 0.307 0.765 sum 2.673 -7.151 25.098 26.234 Atomic orbital electron populations 1.22047 0.93800 1.02783 1.03641 1.21656 0.96108 0.77650 1.03599 1.48753 1.35541 1.10224 1.21157 1.22470 0.96054 0.94848 0.96528 1.21317 1.09669 0.96757 1.01896 1.21531 0.97414 0.94212 0.95306 1.20027 1.04682 0.93240 0.92132 1.20292 0.77621 0.84854 0.87367 1.90739 1.47159 1.23911 1.78373 1.45988 1.70518 1.10783 1.09639 1.20886 0.97230 0.96851 0.79038 0.89502 1.22417 0.96913 1.01506 0.97213 1.21371 0.97327 0.89355 0.91898 1.44322 1.31385 1.29774 1.27238 1.18883 1.33275 0.93334 0.93816 0.89567 1.25257 0.98165 0.97749 0.96090 1.69828 1.28980 1.35805 1.20228 0.86990 0.78934 0.87268 0.75729 1.21418 1.22997 1.19423 1.21551 0.90315 0.98745 0.89738 1.22723 0.87356 0.95150 0.92856 0.92094 1.86480 1.46624 1.45265 1.58989 1.77424 1.23200 0.96226 1.11055 0.92220 0.90889 0.90790 0.89778 0.88864 0.81241 0.83646 0.87490 0.87114 0.76916 0.91442 0.91337 0.95237 0.90416 0.92650 0.94911 0.91214 0.77808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 10.10 37.16 0.38 -0.88 16 2 C 0.13 1.05 7.23 -4.04 -0.03 1.02 16 3 N -0.37 -4.38 3.68 -61.36 -0.23 -4.61 16 4 C 0.05 0.46 11.45 -17.22 -0.20 0.26 16 5 C -0.27 -2.91 10.72 -40.01 -0.43 -3.34 16 6 C 0.08 1.11 6.02 -82.40 -0.50 0.61 16 7 C -0.06 -0.66 6.28 -29.03 -0.18 -0.84 16 8 C 0.51 7.88 7.78 -10.99 -0.09 7.80 16 9 O -0.53 -10.56 15.22 5.56 0.08 -10.47 16 10 N -0.72 -10.22 4.92 -53.77 -0.26 -10.48 16 11 C 0.16 2.85 2.12 -67.89 -0.14 2.70 16 12 H 0.09 1.74 7.57 -51.93 -0.39 1.35 16 13 C -0.14 -2.67 5.65 -26.61 -0.15 -2.82 16 14 C 0.13 2.86 4.20 -3.71 -0.02 2.84 16 15 N -0.60 -14.20 2.77 -172.32 -0.48 -14.68 16 16 C -0.27 -7.30 10.04 -15.06 -0.15 -7.45 16 17 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 18 C 0.03 0.77 5.23 -17.43 -0.09 0.68 16 19 N -0.91 -27.60 13.97 55.49 0.78 -26.83 16 20 Si 0.88 22.72 24.35 -169.99 -4.14 18.58 16 21 H -0.29 -7.19 6.62 56.52 0.37 -6.82 16 22 H -0.30 -7.88 7.11 56.52 0.40 -7.47 16 23 H -0.27 -6.91 6.64 56.52 0.38 -6.53 16 24 C 0.12 2.38 6.14 -3.72 -0.02 2.36 16 25 C 0.08 1.29 3.14 -26.61 -0.08 1.21 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 O -0.57 -7.94 13.16 -35.23 -0.46 -8.41 16 28 N -0.26 -3.90 11.76 33.67 0.40 -3.51 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.43 8.07 -51.93 -0.42 0.01 16 34 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.11 0.89 8.12 -51.93 -0.42 0.47 16 38 H 0.40 4.44 8.60 -40.82 -0.35 4.08 16 39 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.03 0.68 7.08 -51.93 -0.37 0.32 16 42 H 0.08 1.91 4.50 -51.93 -0.23 1.67 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 46 H 0.38 3.67 9.08 45.56 0.41 4.09 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -37.42 373.00 -6.84 -44.27 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.45 Total: 6.36 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -1.70 Total: 4.15 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.20 Total: -60.10 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.38 Total: -18.88 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.14 Total: 18.58 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.42 -6.84 -44.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090277396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.357 kcal (2) G-P(sol) polarization free energy of solvation -37.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds