Wall clock time and date at job start Fri Apr 10 2020 18:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47249 * 2 1 4 4 C 1.34949 * 126.03808 * 125.30906 * 3 2 1 5 5 C 1.35316 * 107.74634 * 180.15175 * 4 3 2 6 6 C 1.39871 * 107.91627 * 359.60514 * 5 4 3 7 7 C 1.50703 * 125.89715 * 180.26301 * 6 5 4 8 8 C 1.50699 * 109.46848 * 125.00401 * 7 6 5 9 9 O 1.21276 * 120.00172 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00140 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.46001 * 325.02283 * 11 10 8 13 13 C 1.53042 * 109.46323 * 85.00030 * 11 10 8 14 14 C 1.53193 * 109.31582 * 181.38724 * 13 11 10 15 15 N 1.46928 * 108.77186 * 305.36117 * 14 13 11 16 16 C 1.36938 * 120.62738 * 233.62742 * 15 14 13 17 17 H 1.07997 * 119.99423 * 152.62288 * 16 15 14 18 18 C 1.38812 * 120.00199 * 332.62882 * 16 15 14 19 19 N 1.31621 * 120.00185 * 159.34449 * 18 16 15 20 20 Si 1.86803 * 120.00057 * 339.33788 * 18 16 15 21 21 H 1.48505 * 109.46868 * 92.96475 * 20 18 16 22 22 H 1.48497 * 109.47419 * 212.96611 * 20 18 16 23 23 H 1.48505 * 109.46924 * 332.96747 * 20 18 16 24 24 C 1.46921 * 118.73844 * 53.60814 * 15 14 13 25 25 C 1.53047 * 109.46178 * 205.06595 * 11 10 8 26 26 H 1.09001 * 109.49391 * 298.56390 * 25 11 10 27 27 O 1.42896 * 109.49852 * 58.66090 * 25 11 10 28 28 N 1.30836 * 108.20777 * 0.24819 * 6 5 4 29 29 H 1.09007 * 109.47032 * 300.00174 * 1 2 3 30 30 H 1.08995 * 109.47111 * 59.99847 * 1 2 3 31 31 H 1.08996 * 109.47319 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47297 * 239.99840 * 2 1 3 33 33 H 1.09002 * 109.47008 * 119.99463 * 2 1 3 34 34 H 1.08000 * 126.12816 * 359.97438 * 4 3 2 35 35 H 1.07996 * 126.04136 * 179.87468 * 5 4 3 36 36 H 1.08995 * 109.47600 * 245.00465 * 7 6 5 37 37 H 1.09003 * 109.46764 * 5.00746 * 7 6 5 38 38 H 0.97003 * 119.99852 * 359.97438 * 10 8 7 39 39 H 1.09009 * 109.49225 * 301.33420 * 13 11 10 40 40 H 1.09001 * 109.49856 * 61.39611 * 13 11 10 41 41 H 1.09001 * 109.58462 * 65.14597 * 14 13 11 42 42 H 1.09001 * 109.58363 * 185.43125 * 14 13 11 43 43 H 0.97000 * 120.00110 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.58457 * 66.17927 * 24 15 14 45 45 H 1.09003 * 109.58323 * 186.45747 * 24 15 14 46 46 H 0.96701 * 114.00139 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8777 1.9195 0.8905 5 6 3.0719 3.2136 0.5459 6 6 2.3121 3.4725 -0.5995 7 6 2.2350 4.7885 -1.3299 8 6 2.5914 4.5802 -2.7792 9 8 2.8800 3.4724 -3.1795 10 7 2.5903 5.6252 -3.6303 11 6 2.9362 5.4227 -5.0394 12 1 3.7042 4.6533 -5.1178 13 6 1.6910 4.9808 -5.8117 14 6 2.0640 4.7366 -7.2773 15 7 2.7065 5.9460 -7.8096 16 6 2.2404 6.5379 -8.9530 17 1 2.3808 7.5974 -9.1084 18 6 1.5873 5.7763 -9.9124 19 7 0.7968 6.3587 -10.7889 20 14 1.8306 3.9248 -9.9595 21 1 0.7667 3.2653 -9.1605 22 1 1.7590 3.4517 -11.3653 23 1 3.1595 3.5855 -9.3901 24 6 3.8583 6.5083 -7.0914 25 6 3.4653 6.7327 -5.6279 26 1 2.6892 7.4960 -5.5726 27 8 4.6098 7.1605 -4.8869 28 7 1.6801 2.3749 -0.9276 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.3273 1.4097 1.7297 35 1 3.7053 3.9202 1.0614 36 1 1.2223 5.1852 -1.2581 37 1 2.9343 5.4943 -0.8815 38 1 2.3598 6.5114 -3.3100 39 1 1.3012 4.0602 -5.3772 40 1 0.9314 5.7605 -5.7541 41 1 2.7552 3.8964 -7.3433 42 1 1.1641 4.5155 -7.8513 43 1 0.3401 5.8264 -11.4590 44 1 4.6958 5.8126 -7.1424 45 1 4.1437 7.4575 -7.5450 46 1 4.9981 7.9870 -5.2053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090277396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:46 Heat of formation + Delta-G solvation = -11.589675 kcal Electronic energy + Delta-G solvation = -27538.258271 eV Core-core repulsion = 23657.246773 eV Total energy + Delta-G solvation = -3881.011498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.12269 -40.99584 -39.47352 -37.11524 -35.81377 -35.50311 -34.04351 -32.78490 -31.76078 -30.81910 -30.52189 -28.98162 -26.80211 -24.39753 -24.28532 -23.61906 -21.98764 -21.71126 -21.46687 -20.31661 -18.99958 -18.08743 -18.01376 -17.88454 -17.58489 -16.71474 -16.39224 -16.21312 -16.10989 -15.53147 -15.30119 -15.12798 -14.92551 -14.60940 -14.49488 -14.24101 -14.03978 -13.97984 -13.72735 -13.50183 -13.28802 -13.19480 -12.98219 -12.95087 -12.82562 -12.65936 -12.23660 -12.17682 -11.90787 -11.65864 -11.46727 -11.39522 -11.15731 -10.91306 -10.66080 -10.15613 -10.01573 -9.41567 -9.03483 -8.21623 -5.54352 1.05669 1.25923 1.36980 1.44910 1.68648 1.74333 1.80614 2.35214 2.36471 2.90555 3.10982 3.35022 3.51411 3.78394 3.87607 3.95382 4.01145 4.07213 4.09863 4.14964 4.22907 4.30204 4.33512 4.35133 4.54458 4.57396 4.68032 4.70762 4.78562 4.80604 4.85478 4.89467 4.90484 4.96348 5.01978 5.14922 5.22677 5.24677 5.51489 5.76253 5.79856 6.08256 6.26713 6.65463 6.78567 6.88252 6.93198 7.37346 7.53988 7.94660 8.97480 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.003029 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.238597 B = 9242.370104 C =10508.897472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 N -0.383 5.383 4 C 0.052 3.948 5 C -0.283 4.283 6 C 0.062 3.938 7 C -0.051 4.051 8 C 0.511 3.489 9 O -0.579 6.579 10 N -0.705 5.705 11 C 0.170 3.830 12 H 0.059 0.941 13 C -0.127 4.127 14 C 0.124 3.876 15 N -0.613 5.613 16 C -0.247 4.247 17 H 0.068 0.932 18 C -0.025 4.025 19 N -0.949 5.949 20 Si 0.932 3.068 21 H -0.280 1.280 22 H -0.306 1.306 23 H -0.269 1.269 24 C 0.118 3.882 25 C 0.102 3.898 26 H 0.074 0.926 27 O -0.567 6.567 28 N -0.317 5.317 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.213 0.787 35 H 0.170 0.830 36 H 0.129 0.871 37 H 0.148 0.852 38 H 0.416 0.584 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.022 0.978 42 H 0.056 0.944 43 H 0.263 0.737 44 H 0.030 0.970 45 H 0.080 0.920 46 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.926 -5.067 29.183 29.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.002 3.998 3 N -0.166 5.166 4 C -0.094 4.094 5 C -0.312 4.312 6 C -0.105 4.105 7 C -0.092 4.092 8 C 0.298 3.702 9 O -0.458 6.458 10 N -0.356 5.356 11 C 0.064 3.936 12 H 0.077 0.923 13 C -0.167 4.167 14 C -0.002 4.002 15 N -0.339 5.339 16 C -0.376 4.376 17 H 0.086 0.914 18 C -0.221 4.221 19 N -0.595 5.595 20 Si 0.762 3.238 21 H -0.207 1.207 22 H -0.235 1.235 23 H -0.194 1.194 24 C -0.008 4.008 25 C 0.041 3.959 26 H 0.092 0.908 27 O -0.374 6.374 28 N -0.140 5.140 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.152 0.848 34 H 0.230 0.770 35 H 0.188 0.812 36 H 0.147 0.853 37 H 0.165 0.835 38 H 0.253 0.747 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.099 0.901 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.082 -7.113 28.307 29.349 hybrid contribution 0.426 0.158 -0.681 0.819 sum 3.508 -6.954 27.626 28.703 Atomic orbital electron populations 1.21982 0.93812 1.03800 1.01962 1.21968 0.96215 0.76536 1.05070 1.49059 1.35860 1.10750 1.20914 1.23215 0.94662 0.94814 0.96664 1.21717 1.09967 0.97914 1.01565 1.22005 0.97700 0.94494 0.96308 1.20133 1.06823 0.93460 0.88767 1.21070 0.76229 0.83956 0.88990 1.90721 1.49488 1.26031 1.79533 1.45779 1.69960 1.11758 1.08145 1.20557 0.95494 0.96758 0.80760 0.92294 1.22215 0.98003 1.01564 0.94953 1.21307 0.96154 0.88872 0.93833 1.44411 1.32913 1.29913 1.26642 1.18902 1.31484 0.92655 0.94573 0.91440 1.25761 0.98838 1.00944 0.96510 1.69921 1.30874 1.37045 1.21641 0.86147 0.78869 0.83543 0.75263 1.20723 1.23479 1.19398 1.21773 0.88701 0.98798 0.91501 1.22251 0.88374 0.94770 0.90483 0.90834 1.86454 1.45810 1.46870 1.58267 1.77330 1.25410 0.97803 1.13434 0.92106 0.94213 0.88403 0.90851 0.84770 0.77027 0.81217 0.85348 0.83469 0.74697 0.92015 0.90629 0.95961 0.92555 0.92810 0.95223 0.90142 0.75252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 10.10 71.98 0.73 -1.59 16 2 C 0.12 1.81 7.23 86.38 0.62 2.43 16 3 N -0.38 -8.53 3.68 -348.06 -1.28 -9.81 16 4 C 0.05 0.88 11.45 83.54 0.96 1.84 16 5 C -0.28 -5.48 10.72 21.99 0.24 -5.25 16 6 C 0.06 1.57 6.02 43.10 0.26 1.82 16 7 C -0.05 -1.01 6.28 29.10 0.18 -0.83 16 8 C 0.51 15.02 7.78 87.66 0.68 15.71 16 9 O -0.58 -23.41 15.22 -3.02 -0.05 -23.46 16 10 N -0.70 -18.56 4.92 -442.41 -2.18 -20.74 16 11 C 0.17 5.67 2.12 45.02 0.10 5.77 16 12 H 0.06 2.34 7.57 -2.39 -0.02 2.33 16 13 C -0.13 -4.79 5.65 30.67 0.17 -4.61 16 14 C 0.12 5.62 4.20 86.36 0.36 5.98 16 15 N -0.61 -28.68 2.77 -699.11 -1.94 -30.62 16 16 C -0.25 -13.67 10.04 84.03 0.84 -12.83 16 17 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 18 C -0.02 -1.46 5.23 84.86 0.44 -1.01 16 19 N -0.95 -59.08 13.97 21.65 0.30 -58.78 16 20 Si 0.93 47.92 24.35 68.60 1.67 49.59 16 21 H -0.28 -13.94 6.62 99.48 0.66 -13.28 16 22 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 23 H -0.27 -13.64 6.64 99.48 0.66 -12.98 16 24 C 0.12 4.38 6.14 86.36 0.53 4.91 16 25 C 0.10 3.06 3.14 30.67 0.10 3.15 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 O -0.57 -13.90 13.16 -148.98 -1.96 -15.86 16 28 N -0.32 -9.61 11.76 -47.38 -0.56 -10.16 16 29 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.13 0.83 8.07 -2.39 -0.02 0.81 16 34 H 0.21 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.15 1.79 8.12 -2.39 -0.02 1.77 16 38 H 0.42 7.89 8.60 -92.71 -0.80 7.10 16 39 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.02 1.04 7.08 -2.39 -0.02 1.03 16 42 H 0.06 2.78 4.50 -2.39 -0.01 2.77 16 43 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.08 2.79 7.93 -2.39 -0.02 2.77 16 46 H 0.40 6.21 9.08 -74.06 -0.67 5.53 16 Total: -1.00 -84.84 373.00 -0.33 -85.18 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -0.56 Total: 19.16 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 6.21 Total: 15.50 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -5.65 Total: -130.11 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -2.01 Total: -39.32 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.67 Total: 49.59 kcal Total: -84.84 -0.33 -85.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090277396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.587 kcal (2) G-P(sol) polarization free energy of solvation -84.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds