Wall clock time and date at job start Fri Apr 10 2020 18:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47290 * 2 1 4 4 N 1.28440 * 125.19204 * 272.22989 * 3 2 1 5 5 C 1.30872 * 110.92511 * 180.27592 * 4 3 2 6 6 C 1.50692 * 126.06933 * 179.67819 * 5 4 3 7 7 C 1.39678 * 107.86004 * 359.71311 * 5 4 3 8 8 C 1.36602 * 125.18619 * 92.01349 * 3 2 1 9 9 C 1.47165 * 126.88705 * 0.02562 * 8 3 2 10 10 O 1.21629 * 119.99874 * 4.58521 * 9 8 3 11 11 N 1.34773 * 120.00322 * 184.58960 * 9 8 3 12 12 C 1.46494 * 120.00259 * 174.61163 * 11 9 8 13 13 H 1.09004 * 109.46297 * 325.00403 * 12 11 9 14 14 C 1.53042 * 109.44545 * 84.96531 * 12 11 9 15 15 C 1.53199 * 109.31375 * 181.38244 * 14 12 11 16 16 N 1.46928 * 108.76959 * 305.36405 * 15 14 12 17 17 C 1.36939 * 120.63025 * 233.62671 * 16 15 14 18 18 H 1.07999 * 119.99982 * 148.02501 * 17 16 15 19 19 C 1.38815 * 119.99958 * 328.02759 * 17 16 15 20 20 N 1.31617 * 119.99841 * 167.21635 * 19 17 16 21 21 Si 1.86801 * 120.00075 * 347.21649 * 19 17 16 22 22 H 1.48494 * 109.47157 * 86.22857 * 21 19 17 23 23 H 1.48494 * 109.46979 * 206.23486 * 21 19 17 24 24 H 1.48506 * 109.46767 * 326.23047 * 21 19 17 25 25 C 1.46923 * 118.73952 * 53.61342 * 16 15 14 26 26 C 1.53038 * 109.46442 * 205.02745 * 12 11 9 27 27 H 1.09001 * 109.49859 * 58.64262 * 26 12 11 28 28 O 1.42905 * 109.49333 * 298.58132 * 26 12 11 29 29 H 1.08999 * 109.47406 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46533 * 299.99559 * 1 2 3 31 31 H 1.09000 * 109.47289 * 59.99344 * 1 2 3 32 32 H 1.09007 * 109.46533 * 240.00441 * 2 1 3 33 33 H 1.09000 * 109.47289 * 120.00656 * 2 1 3 34 34 H 1.09001 * 109.47364 * 270.04649 * 6 5 4 35 35 H 1.09002 * 109.47266 * 30.04423 * 6 5 4 36 36 H 1.08996 * 109.47563 * 150.04464 * 6 5 4 37 37 H 1.07994 * 127.31717 * 180.02562 * 7 5 4 38 38 H 0.97001 * 119.99732 * 354.61624 * 11 9 8 39 39 H 1.08997 * 109.49921 * 301.32832 * 14 12 11 40 40 H 1.08995 * 109.49884 * 61.42892 * 14 12 11 41 41 H 1.08992 * 109.58674 * 185.58054 * 15 14 12 42 42 H 1.08995 * 109.70573 * 65.21526 * 15 14 12 43 43 H 0.96999 * 119.99765 * 179.97438 * 20 19 17 44 44 H 1.09009 * 109.58794 * 186.60228 * 25 16 15 45 45 H 1.08991 * 109.70941 * 66.24377 * 25 16 15 46 46 H 0.96701 * 113.99865 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2267 2.0927 -1.0488 5 6 2.6669 3.2823 -0.7268 6 6 3.0265 4.3856 -1.6883 7 6 2.7449 3.3476 0.6663 8 6 2.3178 2.1102 1.1157 9 6 2.2137 1.6666 2.5151 10 8 1.9065 0.5171 2.7673 11 7 2.4585 2.5340 3.5170 12 6 2.2409 2.1274 4.9075 13 1 1.3818 1.4585 4.9601 14 6 3.4844 1.4020 5.4268 15 6 3.2406 0.9479 6.8695 16 7 2.8430 2.1132 7.6711 17 6 3.5115 2.4278 8.8241 18 1 3.6085 3.4597 9.1276 19 6 4.0645 1.4204 9.6027 20 7 4.9131 1.7215 10.5627 21 14 3.6044 -0.3625 9.2879 22 1 4.4879 -0.9230 8.2342 23 1 3.7689 -1.1445 10.5395 24 1 2.1906 -0.4370 8.8398 25 6 1.7147 2.9347 7.2121 26 6 1.9756 3.3665 5.7656 27 1 1.1040 3.8959 5.3805 28 8 3.1144 4.2288 5.7232 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.0794 4.3036 -1.9580 35 1 2.4138 4.2995 -2.5857 36 1 2.8464 5.3516 -1.2167 37 1 3.0691 4.1857 1.2653 38 1 2.7788 3.4276 3.3175 39 1 3.6863 0.5327 4.8011 40 1 4.3388 2.0781 5.3977 41 1 4.1560 0.5191 7.2772 42 1 2.4464 0.2017 6.8907 43 1 5.2993 1.0175 11.1070 44 1 1.6233 3.8169 7.8459 45 1 0.7938 2.3537 7.2595 46 1 3.0160 5.0363 6.2459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090587243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:56 Heat of formation + Delta-G solvation = 17.116883 kcal Electronic energy + Delta-G solvation = -28198.259290 eV Core-core repulsion = 24318.492602 eV Total energy + Delta-G solvation = -3879.766688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.72108 -39.82253 -38.16434 -35.28245 -35.17963 -34.35724 -32.22750 -31.55170 -31.21402 -30.00490 -29.28112 -27.65880 -25.41716 -23.86721 -22.92840 -22.84903 -21.89872 -20.87045 -20.13662 -19.28156 -17.82947 -17.14898 -16.54480 -16.32583 -16.02759 -15.88946 -15.02452 -14.79662 -14.63747 -14.39748 -14.35490 -14.11215 -13.90270 -13.49571 -13.38421 -13.11584 -12.93883 -12.63042 -12.49132 -12.39575 -12.22566 -12.05855 -12.00268 -11.55365 -11.51319 -11.19616 -10.87453 -10.84123 -10.31725 -10.21483 -10.09361 -9.85780 -9.67200 -9.50865 -9.30275 -9.04095 -8.87933 -8.60280 -6.93938 -5.95565 -3.39338 1.13988 2.19765 2.37519 3.13820 3.15181 3.31627 3.46801 3.49060 4.24316 4.41946 4.50354 4.53886 4.71298 4.73559 4.86534 4.92635 5.03620 5.06408 5.18495 5.21976 5.36780 5.38171 5.39342 5.42162 5.47842 5.51637 5.62854 5.67026 5.78703 5.80512 5.90791 6.03514 6.19659 6.23598 6.33024 6.38170 6.44297 6.58670 6.59958 6.64457 6.92451 7.45431 7.91455 7.91868 8.01776 8.11453 8.31106 8.89314 9.68219 10.05534 11.20354 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.003234 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.091950 B = 8655.433839 C = 9422.920150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.109 3.891 3 N -0.254 5.254 4 N -0.279 5.279 5 C 0.019 3.981 6 C -0.065 4.065 7 C -0.188 4.188 8 C -0.031 4.031 9 C 0.587 3.413 10 O -0.542 6.542 11 N -0.700 5.700 12 C 0.164 3.836 13 H 0.093 0.907 14 C -0.138 4.138 15 C 0.123 3.877 16 N -0.597 5.597 17 C -0.258 4.258 18 H 0.084 0.916 19 C 0.024 3.976 20 N -0.913 5.913 21 Si 0.893 3.107 22 H -0.286 1.286 23 H -0.305 1.305 24 H -0.271 1.271 25 C 0.122 3.878 26 C 0.081 3.919 27 H 0.052 0.948 28 O -0.554 6.554 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.160 0.840 38 H 0.406 0.594 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.027 0.973 43 H 0.263 0.737 44 H 0.072 0.928 45 H 0.032 0.968 46 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.773 3.877 -22.068 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.010 4.010 3 N -0.042 5.042 4 N -0.113 5.113 5 C -0.137 4.137 6 C -0.124 4.124 7 C -0.217 4.217 8 C -0.159 4.159 9 C 0.372 3.628 10 O -0.420 6.420 11 N -0.351 5.351 12 C 0.061 3.939 13 H 0.111 0.889 14 C -0.178 4.178 15 C -0.003 4.003 16 N -0.321 5.321 17 C -0.386 4.386 18 H 0.102 0.898 19 C -0.175 4.175 20 N -0.556 5.556 21 Si 0.724 3.276 22 H -0.214 1.214 23 H -0.233 1.233 24 H -0.196 1.196 25 C -0.005 4.005 26 C 0.020 3.980 27 H 0.069 0.931 28 O -0.359 6.359 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.139 0.861 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.178 0.822 38 H 0.242 0.758 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.050 0.950 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -8.017 1.695 -22.992 24.408 hybrid contribution 0.007 0.255 0.854 0.891 sum -8.010 1.951 -22.138 23.623 Atomic orbital electron populations 1.22077 0.93520 1.03505 1.02948 1.22248 0.96178 0.76526 1.06058 1.45765 1.44609 1.12214 1.01576 1.73098 1.19179 1.05213 1.13796 1.21993 1.04030 0.93858 0.93800 1.20071 1.01806 0.93717 0.96792 1.22131 1.07491 0.97142 0.94955 1.21475 1.10732 0.93807 0.89912 1.16956 0.77499 0.85329 0.83039 1.90772 1.49055 1.17709 1.84468 1.45852 1.66534 1.16725 1.05957 1.21050 0.99804 0.95314 0.77759 0.88886 1.22320 0.97787 0.99807 0.97880 1.21457 0.99053 0.90121 0.89639 1.44174 1.33350 1.29817 1.24731 1.18854 1.29081 0.93870 0.96820 0.89836 1.25370 0.98308 0.98040 0.95768 1.69760 1.30539 1.32837 1.22500 0.86881 0.79276 0.85898 0.75535 1.21401 1.23290 1.19608 1.21574 0.90738 0.96202 0.92024 1.22593 0.87895 0.90209 0.97334 0.93069 1.86442 1.40648 1.35426 1.73384 0.90052 0.91702 0.91949 0.88547 0.86116 0.90869 0.91135 0.90536 0.82239 0.75827 0.92383 0.90450 0.90453 0.95472 0.92695 0.90934 0.94970 0.77597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.11 1.15 6.62 -4.04 -0.03 1.13 16 3 N -0.25 -3.24 3.35 -57.13 -0.19 -3.43 16 4 N -0.28 -3.56 11.90 33.64 0.40 -3.16 16 5 C 0.02 0.22 7.22 -82.47 -0.60 -0.38 16 6 C -0.07 -0.49 10.45 36.00 0.38 -0.11 16 7 C -0.19 -2.10 10.44 -38.98 -0.41 -2.51 16 8 C -0.03 -0.40 6.96 -82.06 -0.57 -0.97 16 9 C 0.59 8.51 7.75 -12.64 -0.10 8.42 16 10 O -0.54 -9.11 14.28 5.25 0.07 -9.03 16 11 N -0.70 -9.51 5.04 -54.93 -0.28 -9.78 16 12 C 0.16 2.60 2.16 -67.89 -0.15 2.45 16 13 H 0.09 1.54 7.66 -51.93 -0.40 1.14 16 14 C -0.14 -2.58 5.51 -26.61 -0.15 -2.73 16 15 C 0.12 2.71 4.16 -3.71 -0.02 2.69 16 16 N -0.60 -13.64 2.68 -172.32 -0.46 -14.10 16 17 C -0.26 -7.01 10.06 -15.06 -0.15 -7.16 16 18 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 19 C 0.02 0.69 5.34 -17.43 -0.09 0.60 16 20 N -0.91 -27.86 13.97 55.49 0.78 -27.09 16 21 Si 0.89 22.61 24.24 -169.99 -4.12 18.49 16 22 H -0.29 -7.05 6.43 56.52 0.36 -6.69 16 23 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 24 H -0.27 -6.71 6.59 56.52 0.37 -6.34 16 25 C 0.12 2.19 6.16 -3.71 -0.02 2.16 16 26 C 0.08 1.19 3.38 -26.61 -0.09 1.10 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 O -0.55 -8.21 12.08 -35.23 -0.43 -8.64 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.12 1.41 6.11 -51.93 -0.32 1.09 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.16 1.37 7.58 -52.49 -0.40 0.97 16 38 H 0.41 4.77 7.29 -40.82 -0.30 4.47 16 39 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 40 H 0.08 1.55 7.61 -51.93 -0.40 1.15 16 41 H 0.08 1.88 4.41 -51.93 -0.23 1.65 16 42 H 0.03 0.60 6.92 -51.93 -0.36 0.24 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.07 1.24 7.93 -51.92 -0.41 0.83 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.38 4.42 9.08 45.56 0.41 4.83 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -33.74 366.41 -6.55 -40.30 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.24 Total: 7.35 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.61 Total: 3.58 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.25 Total: -57.57 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.35 Total: -17.67 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.12 Total: 18.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.74 -6.55 -40.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090587243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.414 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds