Wall clock time and date at job start Fri Apr 10 2020 18:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46503 * 109.47284 * 2 1 4 4 C 1.34261 * 125.75553 * 125.00042 * 3 2 1 5 5 C 1.38040 * 107.41760 * 180.02562 * 4 3 2 6 6 C 1.47431 * 126.41483 * 179.97438 * 5 4 3 7 7 O 1.21607 * 119.99786 * 180.02562 * 6 5 4 8 8 N 1.34774 * 119.99956 * 0.02624 * 6 5 4 9 9 C 1.46497 * 119.99814 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46402 * 35.02506 * 9 8 6 11 11 C 1.53044 * 109.46096 * 275.06652 * 9 8 6 12 12 C 1.53192 * 109.30981 * 178.61762 * 11 9 8 13 13 N 1.46918 * 108.77961 * 54.63433 * 12 11 9 14 14 C 1.36942 * 120.63083 * 126.66478 * 13 12 11 15 15 H 1.08006 * 120.00049 * 331.60340 * 14 13 12 16 16 C 1.38805 * 120.00309 * 151.60628 * 14 13 12 17 17 N 1.31622 * 119.99962 * 343.11515 * 16 14 13 18 18 Si 1.86795 * 120.00332 * 163.11972 * 16 14 13 19 19 H 1.48504 * 109.47268 * 89.99585 * 18 16 14 20 20 H 1.48502 * 109.47416 * 209.99914 * 18 16 14 21 21 H 1.48507 * 109.47127 * 329.99639 * 18 16 14 22 22 C 1.46921 * 118.74128 * 306.39349 * 13 12 11 23 23 C 1.53047 * 109.46028 * 154.99971 * 9 8 6 24 24 H 1.09004 * 109.52182 * 61.41643 * 23 9 8 25 25 O 1.42900 * 109.49756 * 301.33996 * 23 9 8 26 26 C 1.41291 * 107.17210 * 0.22841 * 5 4 3 27 27 C 1.50695 * 125.99210 * 179.74038 * 26 5 4 28 28 N 1.30452 * 108.01964 * 359.61149 * 26 5 4 29 29 H 1.08994 * 109.47305 * 59.99913 * 1 2 3 30 30 H 1.09005 * 109.47230 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47022 * 299.99932 * 1 2 3 32 32 H 1.08997 * 109.47542 * 240.00011 * 2 1 3 33 33 H 1.09004 * 109.47305 * 120.00024 * 2 1 3 34 34 H 1.08002 * 126.29259 * 0.04336 * 4 3 2 35 35 H 0.96998 * 120.00276 * 359.97438 * 8 6 5 36 36 H 1.08993 * 109.49625 * 298.56715 * 11 9 8 37 37 H 1.08994 * 109.49634 * 58.63062 * 11 9 8 38 38 H 1.08999 * 109.59077 * 294.84222 * 12 11 9 39 39 H 1.09008 * 109.58009 * 174.42595 * 12 11 9 40 40 H 0.96995 * 120.00418 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.58788 * 173.39325 * 22 13 12 42 42 H 1.09005 * 109.58640 * 293.67568 * 22 13 12 43 43 H 0.96695 * 113.99987 * 180.16034 * 25 23 9 44 44 H 1.08999 * 109.47291 * 89.99620 * 27 26 5 45 45 H 1.08994 * 109.47181 * 209.99533 * 27 26 5 46 46 H 1.08999 * 109.46838 * 330.00093 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8690 1.9125 0.8925 5 6 3.0705 3.2311 0.5371 6 6 3.9314 4.2038 1.2345 7 8 4.0234 5.3425 0.8179 8 7 4.6164 3.8308 2.3336 9 6 5.4723 4.7972 3.0262 10 1 5.0189 5.7871 2.9736 11 6 6.8484 4.8308 2.3573 12 6 7.7292 5.8671 3.0624 13 7 7.7637 5.5597 4.4987 14 6 8.9582 5.4161 5.1529 15 1 9.8304 5.0736 4.6158 16 6 9.0480 5.7108 6.5063 17 7 8.1106 6.4296 7.0870 18 14 10.4992 5.0875 7.5037 19 1 11.5932 6.0911 7.4663 20 1 10.0759 4.8688 8.9102 21 1 10.9824 3.8069 6.9274 22 6 6.4926 5.4151 5.2210 23 6 5.6256 4.3839 4.4919 24 1 6.1015 3.4048 4.5464 25 8 4.3374 4.3230 5.1075 26 6 2.2926 3.4757 -0.6168 27 6 2.1945 4.7842 -1.3577 28 7 1.6763 2.3694 -0.9299 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.3142 1.4021 1.7337 35 1 4.5427 2.9226 2.6661 36 1 7.3130 3.8477 2.4315 37 1 6.7361 5.1019 1.3076 38 1 7.3133 6.8633 2.9119 39 1 8.7395 5.8254 2.6553 40 1 8.1736 6.6359 8.0327 41 1 6.6869 5.0752 6.2383 42 1 5.9768 6.3750 5.2487 43 1 4.3589 4.0689 6.0402 44 1 2.9634 4.8235 -2.1292 45 1 1.2111 4.8669 -1.8204 46 1 2.3380 5.6087 -0.6594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090611126.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:02 Heat of formation + Delta-G solvation = 6.375864 kcal Electronic energy + Delta-G solvation = -27714.780626 eV Core-core repulsion = 23834.548172 eV Total energy + Delta-G solvation = -3880.232453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53569 -39.34776 -37.67705 -35.25213 -35.05037 -34.23657 -32.30762 -31.53535 -30.41525 -29.16990 -28.75625 -27.80284 -25.21932 -23.88790 -22.67857 -22.15486 -21.64183 -20.12944 -19.84392 -19.21494 -17.73718 -16.89490 -16.55712 -16.18362 -15.88679 -15.68915 -14.85144 -14.76038 -14.31069 -14.13783 -14.00113 -13.77050 -13.50427 -13.34582 -13.12611 -12.96703 -12.62467 -12.59867 -12.33676 -12.16165 -12.04126 -11.91344 -11.75775 -11.64647 -11.20658 -10.88584 -10.82544 -10.75841 -10.37377 -10.21007 -10.00329 -9.76378 -9.49853 -9.46175 -9.29194 -8.83565 -8.60559 -8.46172 -6.76217 -5.86665 -3.30371 1.41534 2.12363 2.15996 3.32289 3.39885 3.41590 3.54108 3.66947 4.05796 4.40717 4.41780 4.50167 4.61316 4.64280 4.74821 5.00592 5.18375 5.27532 5.32835 5.35109 5.39909 5.43911 5.53203 5.64492 5.66732 5.70379 5.88518 5.94547 5.98975 6.05227 6.11994 6.28454 6.47378 6.50732 6.55456 6.64022 6.74085 6.93453 6.95514 7.13755 7.45939 7.48247 7.72469 7.89104 8.11086 8.37100 8.60318 9.12062 9.74921 10.31589 11.21753 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.002759 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.592323 B =10145.995151 C =10690.245647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.127 3.873 3 N -0.361 5.361 4 C 0.097 3.903 5 C -0.281 4.281 6 C 0.591 3.409 7 O -0.545 6.545 8 N -0.714 5.714 9 C 0.165 3.835 10 H 0.088 0.912 11 C -0.138 4.138 12 C 0.145 3.855 13 N -0.589 5.589 14 C -0.255 4.255 15 H 0.068 0.932 16 C 0.002 3.998 17 N -0.902 5.902 18 Si 0.903 3.097 19 H -0.286 1.286 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.149 3.851 23 C 0.073 3.927 24 H 0.050 0.950 25 O -0.572 6.572 26 C 0.131 3.869 27 C -0.077 4.077 28 N -0.303 5.303 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.181 0.819 35 H 0.392 0.608 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.024 0.976 39 H 0.060 0.940 40 H 0.255 0.745 41 H 0.092 0.908 42 H 0.030 0.970 43 H 0.375 0.625 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.171 -13.775 -11.458 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.006 3.994 3 N -0.140 5.140 4 C -0.054 4.054 5 C -0.296 4.296 6 C 0.379 3.621 7 O -0.423 6.423 8 N -0.363 5.363 9 C 0.061 3.939 10 H 0.107 0.893 11 C -0.179 4.179 12 C 0.018 3.982 13 N -0.313 5.313 14 C -0.384 4.384 15 H 0.086 0.914 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.732 3.268 19 H -0.213 1.213 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.022 3.978 23 C 0.012 3.988 24 H 0.068 0.932 25 O -0.377 6.377 26 C -0.037 4.037 27 C -0.135 4.135 28 N -0.125 5.125 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.198 0.802 35 H 0.225 0.775 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.048 0.952 43 H 0.221 0.779 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.156 -13.447 -12.990 23.451 hybrid contribution 1.480 -0.773 2.065 2.656 sum -12.676 -14.220 -10.925 21.960 Atomic orbital electron populations 1.22054 0.93481 1.02983 1.03832 1.21796 0.96417 0.77051 1.04107 1.48478 1.34482 1.10425 1.20574 1.23095 0.93250 0.94024 0.95036 1.20374 1.11306 0.94435 1.03506 1.17214 0.78541 0.86574 0.79820 1.90729 1.65379 1.19929 1.66280 1.45918 1.47210 1.14877 1.28309 1.20955 0.90304 0.93380 0.89286 0.89347 1.22408 0.94785 1.01340 0.99358 1.20949 0.97355 0.94430 0.85489 1.44015 1.02170 1.81598 1.03551 1.19190 0.88686 1.38202 0.92352 0.91427 1.25088 0.97962 0.98018 0.98577 1.70026 1.35161 1.38243 1.11196 0.86295 0.82175 0.78847 0.79441 1.21270 1.21546 1.20460 1.21401 0.84938 0.94823 0.96681 1.22973 0.83765 1.00059 0.92031 0.93182 1.86427 1.29755 1.92921 1.28588 1.22476 0.92718 0.94959 0.93523 1.20335 1.02244 0.90911 1.00017 1.77116 1.24989 0.96716 1.13698 0.90948 0.90551 0.91917 0.89434 0.88326 0.80226 0.77539 0.92168 0.91698 0.95804 0.92175 0.93498 0.88965 0.95204 0.77871 0.90307 0.91309 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.09 37.15 0.37 -0.57 16 2 C 0.13 0.75 7.21 -4.04 -0.03 0.72 16 3 N -0.36 -3.68 3.65 -60.81 -0.22 -3.90 16 4 C 0.10 1.01 10.95 -16.56 -0.18 0.82 16 5 C -0.28 -3.87 6.13 -105.07 -0.64 -4.52 16 6 C 0.59 9.63 7.78 -12.52 -0.10 9.53 16 7 O -0.54 -10.56 14.58 5.27 0.08 -10.48 16 8 N -0.71 -10.84 4.91 -54.84 -0.27 -11.11 16 9 C 0.16 2.97 2.12 -67.89 -0.14 2.83 16 10 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 11 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 12 C 0.14 3.05 6.51 -3.72 -0.02 3.02 16 13 N -0.59 -14.35 2.99 -172.33 -0.52 -14.86 16 14 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 15 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 17 N -0.90 -25.41 11.20 55.49 0.62 -24.79 16 18 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 C 0.15 3.41 4.92 -3.72 -0.02 3.39 16 23 C 0.07 1.33 3.14 -26.61 -0.08 1.25 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 25 O -0.57 -9.62 13.16 -35.23 -0.46 -10.08 16 26 C 0.13 1.80 7.26 -82.02 -0.60 1.20 16 27 C -0.08 -0.93 9.92 36.00 0.36 -0.57 16 28 N -0.30 -3.92 12.33 33.89 0.42 -3.51 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.32 8.06 -51.93 -0.42 -0.10 16 34 H 0.18 1.19 7.46 -52.49 -0.39 0.80 16 35 H 0.39 4.86 7.52 -40.82 -0.31 4.55 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 1.22 7.93 -51.92 -0.41 0.81 16 40 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.37 5.01 9.08 45.56 0.41 5.42 16 44 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.10 1.33 6.56 -51.93 -0.34 0.99 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -33.77 375.92 -7.55 -41.31 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.36 Total: 8.30 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -1.47 Total: 7.51 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.03 Total: -58.17 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.39 Total: -20.56 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.77 -7.55 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090611126.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.691 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds