Wall clock time and date at job start Fri Apr 10 2020 18:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46503 * 109.47284 * 2 1 4 4 C 1.34261 * 125.75553 * 125.00042 * 3 2 1 5 5 C 1.38040 * 107.41760 * 180.02562 * 4 3 2 6 6 C 1.47431 * 126.41483 * 179.97438 * 5 4 3 7 7 O 1.21607 * 119.99786 * 180.02562 * 6 5 4 8 8 N 1.34774 * 119.99956 * 0.02624 * 6 5 4 9 9 C 1.46497 * 119.99814 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46402 * 35.02506 * 9 8 6 11 11 C 1.53044 * 109.46096 * 275.06652 * 9 8 6 12 12 C 1.53192 * 109.30981 * 178.61762 * 11 9 8 13 13 N 1.46918 * 108.77961 * 54.63433 * 12 11 9 14 14 C 1.36942 * 120.63083 * 126.66478 * 13 12 11 15 15 H 1.08006 * 120.00049 * 331.60340 * 14 13 12 16 16 C 1.38805 * 120.00309 * 151.60628 * 14 13 12 17 17 N 1.31622 * 119.99962 * 343.11515 * 16 14 13 18 18 Si 1.86795 * 120.00332 * 163.11972 * 16 14 13 19 19 H 1.48504 * 109.47268 * 89.99585 * 18 16 14 20 20 H 1.48502 * 109.47416 * 209.99914 * 18 16 14 21 21 H 1.48507 * 109.47127 * 329.99639 * 18 16 14 22 22 C 1.46921 * 118.74128 * 306.39349 * 13 12 11 23 23 C 1.53047 * 109.46028 * 154.99971 * 9 8 6 24 24 H 1.09004 * 109.52182 * 61.41643 * 23 9 8 25 25 O 1.42900 * 109.49756 * 301.33996 * 23 9 8 26 26 C 1.41291 * 107.17210 * 0.22841 * 5 4 3 27 27 C 1.50695 * 125.99210 * 179.74038 * 26 5 4 28 28 N 1.30452 * 108.01964 * 359.61149 * 26 5 4 29 29 H 1.08994 * 109.47305 * 59.99913 * 1 2 3 30 30 H 1.09005 * 109.47230 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47022 * 299.99932 * 1 2 3 32 32 H 1.08997 * 109.47542 * 240.00011 * 2 1 3 33 33 H 1.09004 * 109.47305 * 120.00024 * 2 1 3 34 34 H 1.08002 * 126.29259 * 0.04336 * 4 3 2 35 35 H 0.96998 * 120.00276 * 359.97438 * 8 6 5 36 36 H 1.08993 * 109.49625 * 298.56715 * 11 9 8 37 37 H 1.08994 * 109.49634 * 58.63062 * 11 9 8 38 38 H 1.08999 * 109.59077 * 294.84222 * 12 11 9 39 39 H 1.09008 * 109.58009 * 174.42595 * 12 11 9 40 40 H 0.96995 * 120.00418 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.58788 * 173.39325 * 22 13 12 42 42 H 1.09005 * 109.58640 * 293.67568 * 22 13 12 43 43 H 0.96695 * 113.99987 * 180.16034 * 25 23 9 44 44 H 1.08999 * 109.47291 * 89.99620 * 27 26 5 45 45 H 1.08994 * 109.47181 * 209.99533 * 27 26 5 46 46 H 1.08999 * 109.46838 * 330.00093 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8690 1.9125 0.8925 5 6 3.0705 3.2311 0.5371 6 6 3.9314 4.2038 1.2345 7 8 4.0234 5.3425 0.8179 8 7 4.6164 3.8308 2.3336 9 6 5.4723 4.7972 3.0262 10 1 5.0189 5.7871 2.9736 11 6 6.8484 4.8308 2.3573 12 6 7.7292 5.8671 3.0624 13 7 7.7637 5.5597 4.4987 14 6 8.9582 5.4161 5.1529 15 1 9.8304 5.0736 4.6158 16 6 9.0480 5.7108 6.5063 17 7 8.1106 6.4296 7.0870 18 14 10.4992 5.0875 7.5037 19 1 11.5932 6.0911 7.4663 20 1 10.0759 4.8688 8.9102 21 1 10.9824 3.8069 6.9274 22 6 6.4926 5.4151 5.2210 23 6 5.6256 4.3839 4.4919 24 1 6.1015 3.4048 4.5464 25 8 4.3374 4.3230 5.1075 26 6 2.2926 3.4757 -0.6168 27 6 2.1945 4.7842 -1.3577 28 7 1.6763 2.3694 -0.9299 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.3142 1.4021 1.7337 35 1 4.5427 2.9226 2.6661 36 1 7.3130 3.8477 2.4315 37 1 6.7361 5.1019 1.3076 38 1 7.3133 6.8633 2.9119 39 1 8.7395 5.8254 2.6553 40 1 8.1736 6.6359 8.0327 41 1 6.6869 5.0752 6.2383 42 1 5.9768 6.3750 5.2487 43 1 4.3589 4.0689 6.0402 44 1 2.9634 4.8235 -2.1292 45 1 1.2111 4.8669 -1.8204 46 1 2.3380 5.6087 -0.6594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090611126.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:01 Heat of formation + Delta-G solvation = -19.251523 kcal Electronic energy + Delta-G solvation = -27715.891913 eV Core-core repulsion = 23834.548172 eV Total energy + Delta-G solvation = -3881.343740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.43544 -40.71658 -39.15757 -36.85807 -35.89467 -35.56260 -33.99992 -32.43489 -31.65826 -30.69307 -30.26318 -28.68701 -26.97273 -24.86965 -24.02177 -23.52594 -22.89478 -21.28736 -21.21962 -20.43909 -19.02238 -18.38847 -18.06730 -17.28572 -17.07864 -16.67181 -16.55317 -15.76285 -15.62866 -15.48600 -15.29526 -14.97161 -14.90208 -14.77358 -14.34644 -14.01518 -13.84545 -13.79756 -13.47302 -13.33527 -13.16525 -13.03307 -13.00628 -12.82648 -12.63792 -12.50094 -12.32029 -12.05156 -12.00075 -11.85511 -11.74592 -11.34628 -10.96648 -10.73704 -10.58360 -10.34636 -10.04803 -9.57279 -8.73625 -7.88976 -5.36547 0.55025 1.12285 1.43337 1.49642 1.51251 1.61012 2.28264 2.50407 2.51415 3.15425 3.28897 3.35905 3.66178 3.72493 3.94764 3.97741 4.08968 4.11013 4.17232 4.33276 4.35157 4.39189 4.46127 4.49479 4.50279 4.74930 4.76153 4.79598 4.80862 4.94308 4.99190 5.01507 5.04460 5.08146 5.19238 5.24124 5.36381 5.53501 5.58116 5.60073 5.65770 5.93870 6.35425 6.53739 6.74811 6.86604 7.12163 7.39964 7.79537 8.32971 9.17723 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.002759 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.592323 B =10145.995151 C =10690.245647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.353 5.353 4 C 0.123 3.877 5 C -0.316 4.316 6 C 0.591 3.409 7 O -0.586 6.586 8 N -0.701 5.701 9 C 0.173 3.827 10 H 0.053 0.947 11 C -0.122 4.122 12 C 0.141 3.859 13 N -0.604 5.604 14 C -0.265 4.265 15 H 0.072 0.928 16 C -0.049 4.049 17 N -0.936 5.936 18 Si 0.970 3.030 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.266 1.266 22 C 0.157 3.843 23 C 0.095 3.905 24 H 0.069 0.931 25 O -0.573 6.573 26 C 0.113 3.887 27 C -0.073 4.073 28 N -0.323 5.323 29 H 0.050 0.950 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.136 0.864 34 H 0.224 0.776 35 H 0.409 0.591 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.007 0.993 39 H 0.066 0.934 40 H 0.252 0.748 41 H 0.071 0.929 42 H -0.007 1.007 43 H 0.391 0.609 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.223 -17.428 -11.575 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.003 4.003 3 N -0.131 5.131 4 C -0.030 4.030 5 C -0.331 4.331 6 C 0.380 3.620 7 O -0.467 6.467 8 N -0.351 5.351 9 C 0.068 3.932 10 H 0.072 0.928 11 C -0.162 4.162 12 C 0.015 3.985 13 N -0.329 5.329 14 C -0.395 4.395 15 H 0.090 0.910 16 C -0.244 4.244 17 N -0.581 5.581 18 Si 0.798 3.202 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.191 1.191 22 C 0.030 3.970 23 C 0.034 3.966 24 H 0.087 0.913 25 O -0.380 6.380 26 C -0.054 4.054 27 C -0.132 4.132 28 N -0.145 5.145 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.154 0.846 34 H 0.240 0.760 35 H 0.245 0.755 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.025 0.975 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.011 0.989 43 H 0.241 0.759 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.240 -17.161 -13.128 25.877 hybrid contribution 1.415 0.336 2.071 2.530 sum -12.824 -16.826 -11.058 23.871 Atomic orbital electron populations 1.22029 0.93480 1.04242 1.02233 1.22291 0.96465 0.74954 1.06584 1.48902 1.33517 1.11287 1.19426 1.23629 0.91620 0.92707 0.95081 1.20222 1.12749 0.95664 1.04500 1.17580 0.78328 0.86493 0.79605 1.90710 1.66741 1.21857 1.67391 1.45617 1.46553 1.15083 1.27871 1.20607 0.90475 0.92591 0.89558 0.92850 1.22190 0.94149 1.00874 0.98956 1.21042 0.98387 0.94687 0.84363 1.44267 1.02097 1.81899 1.04631 1.19543 0.89590 1.37551 0.92787 0.90983 1.25852 1.00593 0.98377 0.99579 1.70189 1.37125 1.39707 1.11112 0.85250 0.78877 0.78498 0.77620 1.21537 1.21787 1.19095 1.21220 0.85053 0.94393 0.96345 1.22531 0.83612 0.98996 0.91505 0.91278 1.86408 1.28532 1.92932 1.30101 1.22668 0.93167 0.95552 0.94009 1.20270 1.03193 0.90134 0.99587 1.77069 1.25373 0.97105 1.14966 0.93114 0.87877 0.92901 0.88237 0.84582 0.75978 0.75469 0.90588 0.91268 0.97518 0.91550 0.93934 0.91110 0.98914 0.75924 0.89922 0.89904 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 10.09 71.98 0.73 -0.68 16 2 C 0.12 0.91 7.21 86.38 0.62 1.54 16 3 N -0.35 -6.13 3.65 -346.31 -1.26 -7.39 16 4 C 0.12 2.11 10.95 84.27 0.92 3.04 16 5 C -0.32 -8.27 6.13 -20.15 -0.12 -8.40 16 6 C 0.59 18.88 7.78 86.67 0.67 19.56 16 7 O -0.59 -23.32 14.58 -4.05 -0.06 -23.38 16 8 N -0.70 -20.06 4.91 -445.66 -2.19 -22.25 16 9 C 0.17 6.16 2.12 45.02 0.10 6.26 16 10 H 0.05 2.31 7.58 -2.39 -0.02 2.29 16 11 C -0.12 -4.29 5.65 30.67 0.17 -4.12 16 12 C 0.14 6.01 6.51 86.36 0.56 6.57 16 13 N -0.60 -29.71 2.99 -699.12 -2.09 -31.81 16 14 C -0.26 -14.05 9.58 84.03 0.81 -13.24 16 15 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 16 C -0.05 -2.61 4.92 84.86 0.42 -2.19 16 17 N -0.94 -53.81 11.20 21.65 0.24 -53.57 16 18 Si 0.97 43.00 29.59 68.60 2.03 45.03 16 19 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 22 C 0.16 7.33 4.92 86.36 0.42 7.76 16 23 C 0.09 3.38 3.14 30.67 0.10 3.47 16 24 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 25 O -0.57 -18.41 13.16 -148.98 -1.96 -20.37 16 26 C 0.11 3.06 7.26 43.51 0.32 3.37 16 27 C -0.07 -1.83 9.92 71.23 0.71 -1.13 16 28 N -0.32 -7.92 12.33 -46.68 -0.58 -8.49 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.14 0.12 8.06 -2.38 -0.02 0.10 16 34 H 0.22 1.70 7.46 -2.91 -0.02 1.68 16 35 H 0.41 8.73 7.52 -92.71 -0.70 8.03 16 36 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.07 2.69 7.93 -2.38 -0.02 2.68 16 40 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 42 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 43 H 0.39 9.78 9.08 -74.06 -0.67 9.11 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 2.23 6.56 -2.39 -0.02 2.21 16 Total: -1.00 -76.07 375.92 0.19 -75.88 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -0.36 Total: 24.54 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 6.42 Total: 21.80 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -5.88 Total: -123.51 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -2.02 Total: -43.75 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -76.07 0.19 -75.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090611126.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.632 kcal (2) G-P(sol) polarization free energy of solvation -76.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds