Wall clock time and date at job start Fri Apr 10 2020 18:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00200 * 2 1 4 4 C 1.53005 * 109.47203 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47136 * 180.02562 * 4 3 2 6 6 C 1.35032 * 124.88597 * 125.00434 * 5 4 3 7 7 C 1.35367 * 107.22837 * 180.02562 * 6 5 4 8 8 C 1.41504 * 105.50330 * 0.26137 * 7 6 5 9 9 C 1.47705 * 126.51490 * 179.70452 * 8 7 6 10 10 O 1.21564 * 120.00576 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99706 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00007 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47307 * 180.02562 * 12 11 9 14 14 C 1.53781 * 113.61074 * 274.13812 * 13 12 11 15 15 C 1.53949 * 87.02081 * 220.04547 * 14 13 12 16 16 N 1.46501 * 113.54072 * 270.81485 * 15 14 13 17 17 C 1.36942 * 119.99667 * 252.49375 * 16 15 14 18 18 H 1.07994 * 120.00393 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99701 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00021 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99940 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47042 * 60.00015 * 21 19 17 23 23 H 1.48499 * 109.47229 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47284 * 300.00165 * 21 19 17 25 25 C 1.53779 * 113.61759 * 176.53037 * 13 12 11 26 26 N 1.28472 * 124.88137 * 305.02376 * 5 4 3 27 27 H 1.09006 * 109.47674 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47011 * 299.99749 * 1 2 3 29 29 H 1.08993 * 109.47488 * 59.99699 * 1 2 3 30 30 H 1.09002 * 109.47354 * 60.00332 * 3 2 1 31 31 H 1.08997 * 109.47005 * 300.00357 * 3 2 1 32 32 H 1.09002 * 109.46857 * 59.99828 * 4 3 2 33 33 H 1.08994 * 109.46991 * 300.00448 * 4 3 2 34 34 H 1.07999 * 126.38674 * 359.97438 * 6 5 4 35 35 H 1.08002 * 127.24456 * 179.97438 * 7 6 5 36 36 H 0.97003 * 120.00212 * 0.02562 * 11 9 8 37 37 H 1.09005 * 109.46817 * 299.99967 * 12 11 9 38 38 H 1.09002 * 109.47133 * 60.00013 * 12 11 9 39 39 H 1.09001 * 112.85336 * 45.32776 * 13 12 11 40 40 H 1.09002 * 113.62004 * 334.56411 * 14 13 12 41 41 H 1.09005 * 113.61513 * 105.47129 * 14 13 12 42 42 H 1.09004 * 113.74696 * 139.94314 * 15 14 13 43 43 H 0.96995 * 120.00370 * 72.48724 * 16 15 14 44 44 H 0.96997 * 119.99700 * 180.02562 * 20 19 17 45 45 H 1.08994 * 113.61245 * 254.52688 * 25 13 12 46 46 H 1.09001 * 113.61416 * 25.43170 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0263 2.9694 0.9072 7 6 5.3352 4.2439 0.5719 8 6 4.5672 4.5282 -0.5821 9 6 4.5456 5.8006 -1.3320 10 8 5.2357 6.7327 -0.9678 11 7 3.7605 5.9282 -2.4201 12 6 3.7385 7.1903 -3.1635 13 6 2.7727 7.0702 -4.3440 14 6 3.4132 6.4658 -5.6048 15 6 2.6126 7.5041 -6.4116 16 7 1.2803 7.0388 -6.8050 17 6 1.0255 6.7174 -8.1116 18 1 1.8065 6.8073 -8.8520 19 6 -0.2367 6.2759 -8.4842 20 7 -1.1884 6.1658 -7.5817 21 14 -0.5845 5.8382 -10.2665 22 1 0.3198 4.7398 -10.6920 23 1 -1.9964 5.3981 -10.4017 24 1 -0.3537 7.0291 -11.1229 25 6 2.6116 8.3739 -5.1434 26 7 3.8773 3.4406 -0.8624 27 1 -0.3635 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8463 -0.8899 32 1 3.8567 0.6437 -0.8909 33 1 3.8574 0.6434 0.8890 34 1 5.4213 2.4136 1.7447 35 1 6.0199 4.9061 1.0810 36 1 3.2095 5.1846 -2.7106 37 1 3.4087 7.9941 -2.5052 38 1 4.7396 7.4115 -3.5337 39 1 1.8252 6.6059 -4.0703 40 1 4.4924 6.6092 -5.6580 41 1 3.1121 5.4359 -5.7966 42 1 3.1701 7.9409 -7.2402 43 1 0.5788 6.9582 -6.1401 44 1 -2.0703 5.8570 -7.8420 45 1 1.6644 8.8822 -4.9633 46 1 3.4713 9.0401 -5.0702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091137475.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:25 Heat of formation + Delta-G solvation = 31.789471 kcal Electronic energy + Delta-G solvation = -26258.704128 eV Core-core repulsion = 22379.573691 eV Total energy + Delta-G solvation = -3879.130437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -42.92586 -39.52189 -38.47657 -38.29894 -34.60240 -34.30752 -33.16743 -31.06833 -30.27228 -29.78521 -27.57106 -26.64115 -25.02474 -24.55956 -23.61747 -22.49113 -21.68293 -21.50898 -20.02204 -18.50176 -18.05475 -17.37023 -17.11513 -16.69028 -16.41826 -16.01934 -15.82319 -15.27412 -15.04708 -14.74693 -14.34703 -14.18092 -14.04509 -13.68752 -13.58178 -13.23622 -13.16082 -12.84425 -12.49114 -12.22069 -12.11212 -11.88166 -11.80892 -11.36132 -11.13119 -11.01822 -10.82422 -10.46992 -10.27161 -10.21159 -10.18755 -9.81562 -9.67380 -9.54829 -9.44371 -9.34221 -8.91431 -8.84947 -6.98887 -5.79926 -3.08740 1.39643 1.88872 1.96181 3.19107 3.37076 3.41759 3.42911 3.47232 3.48173 4.02344 4.34035 4.47818 4.50529 4.56532 4.66792 4.89435 4.91689 5.00609 5.11182 5.12034 5.13709 5.23610 5.28077 5.29406 5.42308 5.46744 5.52828 5.67409 5.74278 5.90191 5.99135 6.13278 6.15903 6.25245 6.40614 6.40718 6.47823 6.55926 6.62880 6.78745 6.93509 7.07836 7.45973 7.69362 7.74518 8.24917 8.39435 9.49931 10.07966 10.42226 11.42513 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009439 B = 0.002767 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.733983 B =10118.014901 C =12642.072835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.282 5.282 6 C -0.016 4.016 7 C -0.178 4.178 8 C -0.011 4.011 9 C 0.601 3.399 10 O -0.539 6.539 11 N -0.710 5.710 12 C 0.131 3.869 13 C -0.120 4.120 14 C -0.168 4.168 15 C 0.167 3.833 16 N -0.706 5.706 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.147 4.147 26 N -0.258 5.258 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.183 0.817 35 H 0.164 0.836 36 H 0.408 0.592 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.068 0.932 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.582 -10.290 20.441 24.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.072 5.072 6 C -0.158 4.158 7 C -0.206 4.206 8 C -0.172 4.172 9 C 0.385 3.615 10 O -0.415 6.415 11 N -0.360 5.360 12 C 0.008 3.992 13 C -0.138 4.138 14 C -0.209 4.209 15 C 0.055 3.945 16 N -0.344 5.344 17 C -0.373 4.373 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.187 4.187 26 N -0.094 5.094 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.200 0.800 35 H 0.181 0.819 36 H 0.243 0.757 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.301 -10.369 19.714 24.138 hybrid contribution -0.403 -0.303 -0.149 0.526 sum 8.898 -10.673 19.565 23.997 Atomic orbital electron populations 1.22814 0.79558 1.03262 1.00705 1.87757 1.20888 1.26554 1.95657 1.22648 0.91976 0.85776 1.02510 1.21697 0.93240 0.78411 1.06254 1.45329 1.31213 1.11555 1.19063 1.22888 0.97878 0.96681 0.98399 1.21797 1.04465 0.95915 0.98458 1.22045 1.01609 0.93968 0.99591 1.16893 0.79846 0.84869 0.79930 1.90780 1.42897 1.39451 1.68363 1.45935 1.44867 1.17273 1.27967 1.21530 1.00042 0.84898 0.92762 1.22707 0.98681 0.99654 0.92785 1.23913 0.98782 1.01489 0.96759 1.21097 0.88056 0.92277 0.93074 1.42168 1.06838 1.77656 1.07780 1.19254 0.95674 1.36812 0.85555 0.91047 1.24758 0.96120 1.02233 0.97773 1.69655 1.02975 1.53066 1.32444 0.86245 0.76960 0.78263 0.84587 1.21222 1.21704 1.21203 1.23437 1.01610 0.95665 0.97969 1.73534 1.22680 0.97632 1.15580 0.89061 0.93787 0.93245 0.92488 0.90997 0.87742 0.86939 0.79962 0.81888 0.75663 0.91622 0.91351 0.88906 0.91380 0.91515 0.91952 0.78113 0.93428 0.91318 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.23 10.70 -35.23 -0.38 -3.61 16 3 C 0.05 0.37 6.04 37.16 0.22 0.59 16 4 C 0.12 0.80 6.77 -4.04 -0.03 0.77 16 5 N -0.28 -2.57 3.41 -61.33 -0.21 -2.78 16 6 C -0.02 -0.13 11.40 -17.17 -0.20 -0.33 16 7 C -0.18 -1.89 10.81 -39.36 -0.43 -2.32 16 8 C -0.01 -0.15 7.13 -82.77 -0.59 -0.74 16 9 C 0.60 9.06 7.82 -12.39 -0.10 8.97 16 10 O -0.54 -9.51 16.93 5.31 0.09 -9.42 16 11 N -0.71 -10.00 5.55 -61.29 -0.34 -10.34 16 12 C 0.13 1.86 5.50 -4.04 -0.02 1.83 16 13 C -0.12 -1.85 3.62 -89.81 -0.33 -2.18 16 14 C -0.17 -2.89 7.44 -25.83 -0.19 -3.08 16 15 C 0.17 3.30 4.57 -67.03 -0.31 2.99 16 16 N -0.71 -17.52 5.31 -52.55 -0.28 -17.80 16 17 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 21 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C -0.15 -2.39 7.39 -25.92 -0.19 -2.59 16 26 N -0.26 -3.12 11.36 33.42 0.38 -2.74 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 0.40 8.04 -51.93 -0.42 -0.01 16 34 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.41 5.50 8.20 -40.82 -0.33 5.16 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 39 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.07 1.05 7.92 -51.93 -0.41 0.64 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.06 1.24 8.10 -51.93 -0.42 0.81 16 43 H 0.38 10.09 7.90 -40.82 -0.32 9.77 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -33.72 391.91 -7.76 -41.48 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -7.35 Total: 11.29 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -1.28 Total: -2.03 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: 0.28 Total: -60.84 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.29 Total: -13.03 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.72 -7.76 -41.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091137475.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.270 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.60 seconds