Wall clock time and date at job start Fri Apr 10 2020 18:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00200 * 2 1 4 4 C 1.53005 * 109.47203 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47136 * 180.02562 * 4 3 2 6 6 C 1.35032 * 124.88597 * 125.00434 * 5 4 3 7 7 C 1.35367 * 107.22837 * 180.02562 * 6 5 4 8 8 C 1.41504 * 105.50330 * 0.26137 * 7 6 5 9 9 C 1.47705 * 126.51490 * 179.70452 * 8 7 6 10 10 O 1.21564 * 120.00576 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99706 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00007 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47307 * 180.02562 * 12 11 9 14 14 C 1.53781 * 113.61074 * 274.13812 * 13 12 11 15 15 C 1.53949 * 87.02081 * 220.04547 * 14 13 12 16 16 N 1.46501 * 113.54072 * 270.81485 * 15 14 13 17 17 C 1.36942 * 119.99667 * 252.49375 * 16 15 14 18 18 H 1.07994 * 120.00393 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99701 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00021 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99940 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47042 * 60.00015 * 21 19 17 23 23 H 1.48499 * 109.47229 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47284 * 300.00165 * 21 19 17 25 25 C 1.53779 * 113.61759 * 176.53037 * 13 12 11 26 26 N 1.28472 * 124.88137 * 305.02376 * 5 4 3 27 27 H 1.09006 * 109.47674 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47011 * 299.99749 * 1 2 3 29 29 H 1.08993 * 109.47488 * 59.99699 * 1 2 3 30 30 H 1.09002 * 109.47354 * 60.00332 * 3 2 1 31 31 H 1.08997 * 109.47005 * 300.00357 * 3 2 1 32 32 H 1.09002 * 109.46857 * 59.99828 * 4 3 2 33 33 H 1.08994 * 109.46991 * 300.00448 * 4 3 2 34 34 H 1.07999 * 126.38674 * 359.97438 * 6 5 4 35 35 H 1.08002 * 127.24456 * 179.97438 * 7 6 5 36 36 H 0.97003 * 120.00212 * 0.02562 * 11 9 8 37 37 H 1.09005 * 109.46817 * 299.99967 * 12 11 9 38 38 H 1.09002 * 109.47133 * 60.00013 * 12 11 9 39 39 H 1.09001 * 112.85336 * 45.32776 * 13 12 11 40 40 H 1.09002 * 113.62004 * 334.56411 * 14 13 12 41 41 H 1.09005 * 113.61513 * 105.47129 * 14 13 12 42 42 H 1.09004 * 113.74696 * 139.94314 * 15 14 13 43 43 H 0.96995 * 120.00370 * 72.48724 * 16 15 14 44 44 H 0.96997 * 119.99700 * 180.02562 * 20 19 17 45 45 H 1.08994 * 113.61245 * 254.52688 * 25 13 12 46 46 H 1.09001 * 113.61416 * 25.43170 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0263 2.9694 0.9072 7 6 5.3352 4.2439 0.5719 8 6 4.5672 4.5282 -0.5821 9 6 4.5456 5.8006 -1.3320 10 8 5.2357 6.7327 -0.9678 11 7 3.7605 5.9282 -2.4201 12 6 3.7385 7.1903 -3.1635 13 6 2.7727 7.0702 -4.3440 14 6 3.4132 6.4658 -5.6048 15 6 2.6126 7.5041 -6.4116 16 7 1.2803 7.0388 -6.8050 17 6 1.0255 6.7174 -8.1116 18 1 1.8065 6.8073 -8.8520 19 6 -0.2367 6.2759 -8.4842 20 7 -1.1884 6.1658 -7.5817 21 14 -0.5845 5.8382 -10.2665 22 1 0.3198 4.7398 -10.6920 23 1 -1.9964 5.3981 -10.4017 24 1 -0.3537 7.0291 -11.1229 25 6 2.6116 8.3739 -5.1434 26 7 3.8773 3.4406 -0.8624 27 1 -0.3635 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8463 -0.8899 32 1 3.8567 0.6437 -0.8909 33 1 3.8574 0.6434 0.8890 34 1 5.4213 2.4136 1.7447 35 1 6.0199 4.9061 1.0810 36 1 3.2095 5.1846 -2.7106 37 1 3.4087 7.9941 -2.5052 38 1 4.7396 7.4115 -3.5337 39 1 1.8252 6.6059 -4.0703 40 1 4.4924 6.6092 -5.6580 41 1 3.1121 5.4359 -5.7966 42 1 3.1701 7.9409 -7.2402 43 1 0.5788 6.9582 -6.1401 44 1 -2.0703 5.8570 -7.8420 45 1 1.6644 8.8822 -4.9633 46 1 3.4713 9.0401 -5.0702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091137475.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:23 Heat of formation + Delta-G solvation = 7.482341 kcal Electronic energy + Delta-G solvation = -26259.758164 eV Core-core repulsion = 22379.573691 eV Total energy + Delta-G solvation = -3880.184473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.68748 -40.76150 -39.75551 -39.00840 -36.03383 -35.07829 -34.86582 -32.19068 -31.70320 -30.65370 -28.80921 -27.30301 -26.44180 -25.88239 -25.08609 -23.46130 -22.76481 -22.42363 -21.04383 -19.83520 -19.36443 -18.87286 -17.99593 -17.44052 -17.10453 -17.02317 -16.79267 -16.62755 -16.26333 -15.88159 -15.73247 -15.47771 -15.02252 -14.80916 -14.69319 -14.52630 -14.25979 -13.98606 -13.72070 -13.29414 -13.04215 -12.92466 -12.91973 -12.65383 -12.62273 -12.36414 -12.20604 -12.08659 -11.90852 -11.64994 -11.49078 -11.23347 -10.93169 -10.80816 -10.78736 -10.38266 -10.14934 -9.98008 -9.00409 -7.95485 -5.23935 0.47962 1.16646 1.32006 1.47311 1.50121 1.56107 2.16103 2.35017 2.55645 2.76093 3.36363 3.37885 3.69558 3.73953 3.78595 3.80577 3.86945 3.98478 4.11613 4.16233 4.21058 4.32095 4.40110 4.42070 4.46411 4.59859 4.64774 4.69754 4.73408 4.75175 4.79747 4.82043 4.92878 4.98439 5.11132 5.24567 5.32020 5.35244 5.46756 5.53633 5.65585 5.80472 5.98311 6.28003 6.40099 6.85495 7.12611 7.32850 8.10081 8.32559 9.27692 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009439 B = 0.002767 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.733983 B =10118.014901 C =12642.072835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.051 3.949 4 C 0.123 3.877 5 N -0.278 5.278 6 C 0.010 3.990 7 C -0.200 4.200 8 C -0.041 4.041 9 C 0.599 3.401 10 O -0.571 6.571 11 N -0.708 5.708 12 C 0.139 3.861 13 C -0.104 4.104 14 C -0.155 4.155 15 C 0.145 3.855 16 N -0.720 5.720 17 C -0.244 4.244 18 H 0.077 0.923 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.973 3.027 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.278 1.278 25 C -0.131 4.131 26 N -0.281 5.281 27 H 0.106 0.894 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.106 0.894 33 H 0.151 0.849 34 H 0.232 0.768 35 H 0.169 0.831 36 H 0.410 0.590 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.374 0.626 44 H 0.251 0.749 45 H 0.059 0.941 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.087 -11.400 21.604 26.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.027 4.027 4 C 0.003 3.997 5 N -0.067 5.067 6 C -0.133 4.133 7 C -0.228 4.228 8 C -0.201 4.201 9 C 0.384 3.616 10 O -0.450 6.450 11 N -0.358 5.358 12 C 0.016 3.984 13 C -0.123 4.123 14 C -0.195 4.195 15 C 0.035 3.965 16 N -0.358 5.358 17 C -0.376 4.376 18 H 0.094 0.906 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.802 3.198 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.204 1.204 25 C -0.171 4.171 26 N -0.118 5.118 27 H 0.124 0.876 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.169 0.831 34 H 0.249 0.751 35 H 0.186 0.814 36 H 0.246 0.754 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.206 0.794 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.846 -11.474 20.867 26.167 hybrid contribution -0.830 -0.010 -0.456 0.947 sum 10.016 -11.484 20.411 25.472 Atomic orbital electron populations 1.22959 0.78855 1.04310 1.00791 1.87734 1.21757 1.26754 1.95663 1.22593 0.92991 0.85489 1.01613 1.21961 0.92181 0.77250 1.08275 1.45641 1.30915 1.11736 1.18457 1.23557 0.95789 0.95692 0.98221 1.22039 1.05040 0.97494 0.98183 1.21923 1.03535 0.93690 1.00912 1.17198 0.79163 0.85398 0.79792 1.90745 1.44228 1.40743 1.69245 1.45924 1.44735 1.17236 1.27887 1.21407 0.99685 0.85154 0.92150 1.22491 0.98142 0.98800 0.92824 1.23754 0.99791 0.99358 0.96613 1.21419 0.86250 0.94205 0.94641 1.42310 1.08545 1.78242 1.06743 1.19650 0.95723 1.35358 0.86859 0.90552 1.25560 0.96190 1.03248 1.01728 1.69812 1.03115 1.54800 1.34270 0.85215 0.76361 0.78194 0.80017 1.20449 1.22203 1.20360 1.23336 1.02505 0.95817 0.95398 1.73484 1.23255 0.98081 1.16958 0.87601 0.92830 0.94068 0.92086 0.93284 0.87569 0.83100 0.75145 0.81367 0.75426 0.91315 0.90834 0.90441 0.88970 0.93721 0.91969 0.79408 0.94021 0.92233 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.57 16 2 O -0.40 -6.14 10.70 -148.98 -1.59 -7.73 16 3 C 0.05 0.72 6.04 71.98 0.43 1.16 16 4 C 0.12 1.26 6.77 86.38 0.58 1.85 16 5 N -0.28 -4.47 3.41 -347.95 -1.19 -5.66 16 6 C 0.01 0.12 11.40 83.54 0.95 1.07 16 7 C -0.20 -3.95 10.81 22.41 0.24 -3.71 16 8 C -0.04 -1.08 7.13 42.46 0.30 -0.77 16 9 C 0.60 18.19 7.82 86.74 0.68 18.87 16 10 O -0.57 -20.27 16.93 -3.92 -0.07 -20.34 16 11 N -0.71 -19.97 5.55 -466.10 -2.59 -22.56 16 12 C 0.14 3.84 5.50 86.38 0.47 4.31 16 13 C -0.10 -3.17 3.62 -10.27 -0.04 -3.21 16 14 C -0.15 -5.20 7.44 31.18 0.23 -4.97 16 15 C 0.14 5.66 4.57 45.58 0.21 5.87 16 16 N -0.72 -36.35 5.31 -320.16 -1.70 -38.04 16 17 C -0.24 -13.60 9.97 84.03 0.84 -12.76 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 19 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 20 N -0.97 -59.29 13.06 21.65 0.28 -59.01 16 21 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 C -0.13 -4.12 7.39 31.12 0.23 -3.89 16 26 N -0.28 -6.63 11.36 -48.18 -0.55 -7.18 16 27 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.15 0.43 8.04 -2.39 -0.02 0.41 16 34 H 0.23 0.46 8.06 -2.91 -0.02 0.43 16 35 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.41 11.26 8.20 -92.71 -0.76 10.50 16 37 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.07 1.99 7.88 -2.39 -0.02 1.97 16 39 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.09 2.67 7.92 -2.39 -0.02 2.66 16 41 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.06 2.42 8.10 -2.38 -0.02 2.40 16 43 H 0.37 20.20 7.90 -92.71 -0.73 19.47 16 44 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.11 2.78 8.10 -2.39 -0.02 2.76 16 Total: -1.00 -74.50 391.91 0.98 -73.52 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.50 Total: 37.29 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 6.86 Total: 1.54 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -5.74 Total: -132.46 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -1.66 Total: -28.07 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -74.50 0.98 -73.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091137475.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.003 kcal (2) G-P(sol) polarization free energy of solvation -74.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds