Wall clock time and date at job start Fri Apr 10 2020 18:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00207 * 2 1 4 4 C 1.52996 * 109.46884 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46897 * 179.97438 * 4 3 2 6 6 C 1.34264 * 125.75269 * 125.00125 * 5 4 3 7 7 C 1.38038 * 107.41877 * 180.02562 * 6 5 4 8 8 C 1.47423 * 126.41882 * 179.97438 * 7 6 5 9 9 O 1.21608 * 119.99728 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00284 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00150 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47001 * 179.97438 * 11 10 8 13 13 C 1.53779 * 113.61277 * 274.13373 * 12 11 10 14 14 C 1.53956 * 87.02250 * 220.05208 * 13 12 11 15 15 N 1.46498 * 113.53773 * 270.81600 * 14 13 12 16 16 C 1.36937 * 119.99881 * 252.49332 * 15 14 13 17 17 H 1.08006 * 120.00022 * 359.97438 * 16 15 14 18 18 C 1.38816 * 120.00036 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00219 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99914 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47050 * 89.99961 * 20 18 16 22 22 H 1.48493 * 109.47233 * 210.00359 * 20 18 16 23 23 H 1.48504 * 109.47220 * 330.00291 * 20 18 16 24 24 C 1.53785 * 87.11315 * 25.36205 * 14 13 12 25 25 C 1.41300 * 107.17045 * 359.97438 * 7 6 5 26 26 N 1.30449 * 108.01964 * 359.97438 * 25 7 6 27 27 H 1.08999 * 109.46984 * 59.99624 * 1 2 3 28 28 H 1.08995 * 109.47337 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47030 * 300.00832 * 1 2 3 30 30 H 1.09003 * 109.47486 * 59.99889 * 3 2 1 31 31 H 1.08999 * 109.46788 * 299.99949 * 3 2 1 32 32 H 1.08997 * 109.47459 * 60.00324 * 4 3 2 33 33 H 1.08999 * 109.47483 * 299.99666 * 4 3 2 34 34 H 1.07999 * 126.28833 * 359.75360 * 6 5 4 35 35 H 0.97003 * 120.00216 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.46639 * 299.99880 * 11 10 8 37 37 H 1.09002 * 109.47125 * 59.99426 * 11 10 8 38 38 H 1.08995 * 112.85283 * 45.33653 * 12 11 10 39 39 H 1.09001 * 113.61440 * 334.56723 * 13 12 11 40 40 H 1.09000 * 113.61393 * 105.47357 * 13 12 11 41 41 H 1.08998 * 113.74712 * 139.94225 * 14 13 12 42 42 H 0.96997 * 120.00559 * 72.48942 * 15 14 13 43 43 H 0.96998 * 120.00523 * 179.97438 * 19 18 16 44 44 H 1.08992 * 113.61792 * 220.09620 * 24 14 13 45 45 H 1.08997 * 113.61294 * 89.18384 * 24 14 13 46 46 H 1.07991 * 125.98967 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0211 2.9859 0.8926 7 6 5.3263 4.2842 0.5366 8 6 6.2610 5.1862 1.2337 9 8 6.8495 4.8028 2.2265 10 7 6.4626 6.4360 0.7714 11 6 7.3920 7.3322 1.4639 12 6 7.4368 8.6791 0.7396 13 6 8.4395 8.7188 -0.4257 14 6 8.7966 10.1435 0.0356 15 7 7.9661 11.1826 -0.5783 16 6 8.4969 12.0077 -1.5335 17 1 9.5280 11.8928 -1.8341 18 6 7.7099 12.9920 -2.1156 19 7 6.4537 13.1325 -1.7491 20 14 8.4343 14.1181 -3.4182 21 1 8.2356 13.5144 -4.7604 22 1 7.7565 15.4382 -3.3639 23 1 9.8868 14.2967 -3.1660 24 6 8.3227 9.7247 1.4374 25 6 4.5750 4.5868 -0.6212 26 7 3.8700 3.5339 -0.9314 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 1.6887 1.8465 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8575 0.6435 -0.8891 33 1 3.8567 0.6438 0.8909 34 1 5.4209 2.4438 1.7368 35 1 5.9930 6.7420 -0.0203 36 1 7.0557 7.4820 2.4899 37 1 8.3880 6.8894 1.4690 38 1 6.4467 9.0514 0.4766 39 1 9.2590 8.0078 -0.3209 40 1 7.9688 8.6821 -1.4082 41 1 9.8620 10.3676 -0.0163 42 1 7.0403 11.2861 -0.3082 43 1 5.9039 13.8205 -2.1555 44 1 7.7579 10.4987 1.9568 45 1 9.1102 9.2891 2.0524 46 1 4.5830 5.5251 -1.1557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091346651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:32 Heat of formation + Delta-G solvation = 26.632332 kcal Electronic energy + Delta-G solvation = -25737.067266 eV Core-core repulsion = 21857.713199 eV Total energy + Delta-G solvation = -3879.354067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.69235 -39.41902 -38.54477 -38.26473 -34.63289 -34.29438 -33.15331 -30.81106 -30.32189 -29.63536 -27.41611 -26.64673 -25.03489 -24.10278 -23.72585 -22.84930 -21.61571 -20.99339 -20.13815 -18.56908 -18.04342 -17.33017 -16.99536 -16.81963 -16.01425 -15.86887 -15.76209 -15.36659 -14.97147 -14.82291 -14.50624 -14.18377 -14.03829 -13.80754 -13.49918 -13.17712 -13.08875 -12.84801 -12.58589 -12.26210 -12.20042 -11.92999 -11.89258 -11.37699 -11.30266 -11.03094 -10.83665 -10.46353 -10.32553 -10.18127 -10.08031 -9.95394 -9.76172 -9.68446 -9.44246 -9.12058 -8.88997 -8.78068 -6.99608 -5.80726 -3.09531 1.24470 1.79129 1.94236 3.18671 3.32763 3.42012 3.43092 3.47520 3.48991 4.04716 4.29766 4.44051 4.48487 4.56005 4.63719 4.77560 4.79226 4.90265 4.97495 5.07179 5.09533 5.12126 5.13135 5.22546 5.25528 5.46102 5.48200 5.66590 5.74264 5.90073 5.99753 6.09873 6.14658 6.24243 6.36488 6.39632 6.49080 6.49715 6.62442 6.76835 6.92730 7.06367 7.19460 7.62701 7.69307 8.31880 8.38557 9.49289 10.07160 10.41344 11.41701 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017847 B = 0.001906 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.476955 B =14689.240696 C =15843.436661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.135 3.865 5 N -0.363 5.363 6 C 0.130 3.870 7 C -0.289 4.289 8 C 0.592 3.408 9 O -0.557 6.557 10 N -0.719 5.719 11 C 0.133 3.867 12 C -0.119 4.119 13 C -0.168 4.168 14 C 0.167 3.833 15 N -0.706 5.706 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.148 4.148 25 C 0.087 3.913 26 N -0.296 5.296 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.189 0.811 35 H 0.401 0.599 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.768 -25.785 5.677 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.144 5.144 6 C -0.020 4.020 7 C -0.304 4.304 8 C 0.379 3.621 9 O -0.437 6.437 10 N -0.369 5.369 11 C 0.010 3.990 12 C -0.138 4.138 13 C -0.209 4.209 14 C 0.054 3.946 15 N -0.344 5.344 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.187 4.187 25 C -0.101 4.101 26 N -0.116 5.116 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.206 0.794 35 H 0.235 0.765 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -9.057 -26.719 5.433 28.731 hybrid contribution 0.044 1.353 -0.508 1.446 sum -9.013 -25.366 4.925 27.367 Atomic orbital electron populations 1.22793 0.79800 1.03178 1.00492 1.87774 1.20701 1.26839 1.95628 1.22652 0.92399 0.85439 1.02233 1.21491 0.92801 0.78627 1.05755 1.48334 1.33059 1.12098 1.20880 1.22985 0.90688 0.94290 0.94080 1.20329 1.10398 0.96380 1.03254 1.17205 0.80528 0.81142 0.83183 1.90760 1.50480 1.75917 1.26500 1.45821 1.46185 1.13106 1.31814 1.21464 0.92758 0.88944 0.95821 1.22707 0.99719 0.93332 0.98058 1.23909 0.98041 1.01191 0.97779 1.21102 0.95056 0.87829 0.90587 1.42166 1.11522 1.35273 1.45454 1.19299 0.95860 1.09118 1.13033 0.90995 1.24755 0.95969 0.99654 1.00493 1.69654 1.06355 1.36199 1.45858 0.86174 0.78112 0.80193 0.81612 1.21714 1.21779 1.20700 1.23439 0.98954 0.97685 0.98669 1.24185 0.93259 0.97861 0.94844 1.77188 1.24335 0.96832 1.13210 0.93605 0.89107 0.93745 0.92520 0.91357 0.88263 0.87268 0.79386 0.76469 0.91822 0.91568 0.88897 0.91404 0.91502 0.91986 0.78115 0.93460 0.91343 0.90460 0.79008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.77 10.70 -35.23 -0.38 -3.15 16 3 C 0.05 0.33 6.12 37.16 0.23 0.56 16 4 C 0.13 0.81 6.86 -4.04 -0.03 0.78 16 5 N -0.36 -3.20 3.65 -60.81 -0.22 -3.43 16 6 C 0.13 1.21 11.25 -16.56 -0.19 1.03 16 7 C -0.29 -3.22 6.13 -105.07 -0.64 -3.86 16 8 C 0.59 7.95 7.81 -12.52 -0.10 7.85 16 9 O -0.56 -9.24 16.90 5.27 0.09 -9.15 16 10 N -0.72 -8.84 5.55 -61.38 -0.34 -9.18 16 11 C 0.13 1.77 5.50 -4.04 -0.02 1.75 16 12 C -0.12 -1.75 3.62 -89.81 -0.33 -2.07 16 13 C -0.17 -2.74 7.44 -25.83 -0.19 -2.94 16 14 C 0.17 3.20 4.57 -67.02 -0.31 2.89 16 15 N -0.71 -17.16 5.31 -52.54 -0.28 -17.44 16 16 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 20 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.15 -2.33 7.39 -25.91 -0.19 -2.52 16 25 C 0.09 0.88 11.50 -16.98 -0.20 0.68 16 26 N -0.30 -3.17 12.33 30.86 0.38 -2.79 16 27 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 0.42 8.06 -51.93 -0.42 0.00 16 34 H 0.19 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.40 4.22 7.43 -40.82 -0.30 3.91 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.21 8.10 -51.93 -0.42 0.78 16 42 H 0.38 9.89 7.90 -40.82 -0.32 9.56 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 46 H 0.19 1.47 7.50 -52.49 -0.39 1.08 16 LS Contribution 391.53 15.07 5.90 5.90 Total: -1.00 -33.91 391.53 -7.54 -41.45 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.30 Total: 9.38 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.09 Total: -1.77 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.26 Total: -59.72 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.29 Total: -12.30 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.91 -7.54 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091346651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.085 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds