Wall clock time and date at job start Fri Apr 10 2020 18:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00207 * 2 1 4 4 C 1.52996 * 109.46884 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46897 * 179.97438 * 4 3 2 6 6 C 1.34264 * 125.75269 * 125.00125 * 5 4 3 7 7 C 1.38038 * 107.41877 * 180.02562 * 6 5 4 8 8 C 1.47423 * 126.41882 * 179.97438 * 7 6 5 9 9 O 1.21608 * 119.99728 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00284 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00150 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47001 * 179.97438 * 11 10 8 13 13 C 1.53779 * 113.61277 * 274.13373 * 12 11 10 14 14 C 1.53956 * 87.02250 * 220.05208 * 13 12 11 15 15 N 1.46498 * 113.53773 * 270.81600 * 14 13 12 16 16 C 1.36937 * 119.99881 * 252.49332 * 15 14 13 17 17 H 1.08006 * 120.00022 * 359.97438 * 16 15 14 18 18 C 1.38816 * 120.00036 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00219 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99914 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47050 * 89.99961 * 20 18 16 22 22 H 1.48493 * 109.47233 * 210.00359 * 20 18 16 23 23 H 1.48504 * 109.47220 * 330.00291 * 20 18 16 24 24 C 1.53785 * 87.11315 * 25.36205 * 14 13 12 25 25 C 1.41300 * 107.17045 * 359.97438 * 7 6 5 26 26 N 1.30449 * 108.01964 * 359.97438 * 25 7 6 27 27 H 1.08999 * 109.46984 * 59.99624 * 1 2 3 28 28 H 1.08995 * 109.47337 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47030 * 300.00832 * 1 2 3 30 30 H 1.09003 * 109.47486 * 59.99889 * 3 2 1 31 31 H 1.08999 * 109.46788 * 299.99949 * 3 2 1 32 32 H 1.08997 * 109.47459 * 60.00324 * 4 3 2 33 33 H 1.08999 * 109.47483 * 299.99666 * 4 3 2 34 34 H 1.07999 * 126.28833 * 359.75360 * 6 5 4 35 35 H 0.97003 * 120.00216 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.46639 * 299.99880 * 11 10 8 37 37 H 1.09002 * 109.47125 * 59.99426 * 11 10 8 38 38 H 1.08995 * 112.85283 * 45.33653 * 12 11 10 39 39 H 1.09001 * 113.61440 * 334.56723 * 13 12 11 40 40 H 1.09000 * 113.61393 * 105.47357 * 13 12 11 41 41 H 1.08998 * 113.74712 * 139.94225 * 14 13 12 42 42 H 0.96997 * 120.00559 * 72.48942 * 15 14 13 43 43 H 0.96998 * 120.00523 * 179.97438 * 19 18 16 44 44 H 1.08992 * 113.61792 * 220.09620 * 24 14 13 45 45 H 1.08997 * 113.61294 * 89.18384 * 24 14 13 46 46 H 1.07991 * 125.98967 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0211 2.9859 0.8926 7 6 5.3263 4.2842 0.5366 8 6 6.2610 5.1862 1.2337 9 8 6.8495 4.8028 2.2265 10 7 6.4626 6.4360 0.7714 11 6 7.3920 7.3322 1.4639 12 6 7.4368 8.6791 0.7396 13 6 8.4395 8.7188 -0.4257 14 6 8.7966 10.1435 0.0356 15 7 7.9661 11.1826 -0.5783 16 6 8.4969 12.0077 -1.5335 17 1 9.5280 11.8928 -1.8341 18 6 7.7099 12.9920 -2.1156 19 7 6.4537 13.1325 -1.7491 20 14 8.4343 14.1181 -3.4182 21 1 8.2356 13.5144 -4.7604 22 1 7.7565 15.4382 -3.3639 23 1 9.8868 14.2967 -3.1660 24 6 8.3227 9.7247 1.4374 25 6 4.5750 4.5868 -0.6212 26 7 3.8700 3.5339 -0.9314 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 1.6887 1.8465 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8575 0.6435 -0.8891 33 1 3.8567 0.6438 0.8909 34 1 5.4209 2.4438 1.7368 35 1 5.9930 6.7420 -0.0203 36 1 7.0557 7.4820 2.4899 37 1 8.3880 6.8894 1.4690 38 1 6.4467 9.0514 0.4766 39 1 9.2590 8.0078 -0.3209 40 1 7.9688 8.6821 -1.4082 41 1 9.8620 10.3676 -0.0163 42 1 7.0403 11.2861 -0.3082 43 1 5.9039 13.8205 -2.1555 44 1 7.7579 10.4987 1.9568 45 1 9.1102 9.2891 2.0524 46 1 4.5830 5.5251 -1.1557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091346651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:31 Heat of formation + Delta-G solvation = 2.491047 kcal Electronic energy + Delta-G solvation = -25738.114111 eV Core-core repulsion = 21857.713199 eV Total energy + Delta-G solvation = -3880.400912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.44066 -40.56789 -39.60531 -38.98286 -35.94493 -35.09923 -34.73345 -32.10827 -31.51027 -30.49122 -28.52987 -27.20684 -26.38835 -25.71189 -24.57317 -23.89917 -22.83432 -21.70375 -21.08870 -19.82776 -19.33257 -18.88448 -17.68430 -17.36400 -16.98127 -16.67376 -16.62226 -16.47319 -16.23613 -15.79796 -15.63680 -15.48672 -15.15564 -14.76663 -14.61910 -14.45169 -14.28823 -13.80589 -13.66046 -13.24336 -13.07279 -12.91260 -12.87900 -12.73996 -12.58751 -12.37240 -12.14819 -12.07443 -12.01744 -11.48358 -11.43249 -11.00031 -10.86347 -10.80334 -10.71074 -10.66531 -10.10598 -9.66474 -8.96754 -7.93272 -5.21009 0.48733 1.11641 1.18249 1.49572 1.50374 1.58904 2.35597 2.47810 2.57593 2.71204 3.39484 3.48615 3.76428 3.77632 3.83172 3.83898 3.85771 3.93903 4.11966 4.17755 4.20875 4.28703 4.37627 4.43665 4.46670 4.47514 4.61412 4.62757 4.70935 4.79947 4.81673 4.87653 4.98120 5.04655 5.16749 5.33499 5.36412 5.41328 5.53433 5.61565 5.71209 5.75369 6.00225 6.30584 6.44442 6.66494 7.31726 7.35725 8.13633 8.35792 9.29935 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017847 B = 0.001906 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.476955 B =14689.240696 C =15843.436661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.056 3.944 4 C 0.130 3.870 5 N -0.358 5.358 6 C 0.141 3.859 7 C -0.313 4.313 8 C 0.594 3.406 9 O -0.593 6.593 10 N -0.715 5.715 11 C 0.143 3.857 12 C -0.101 4.101 13 C -0.153 4.153 14 C 0.142 3.858 15 N -0.719 5.719 16 C -0.242 4.242 17 H 0.076 0.924 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.971 3.029 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.270 1.270 24 C -0.134 4.134 25 C 0.088 3.912 26 N -0.320 5.320 27 H 0.047 0.953 28 H 0.105 0.895 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.136 0.864 34 H 0.212 0.788 35 H 0.409 0.591 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.057 0.943 45 H 0.105 0.895 46 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 -27.448 5.958 29.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.022 4.022 4 C 0.010 3.990 5 N -0.137 5.137 6 C -0.011 4.011 7 C -0.327 4.327 8 C 0.383 3.617 9 O -0.475 6.475 10 N -0.365 5.365 11 C 0.019 3.981 12 C -0.120 4.120 13 C -0.193 4.193 14 C 0.032 3.968 15 N -0.357 5.357 16 C -0.374 4.374 17 H 0.094 0.906 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.801 3.199 21 H -0.215 1.215 22 H -0.224 1.224 23 H -0.195 1.195 24 C -0.174 4.174 25 C -0.100 4.100 26 N -0.140 5.140 27 H 0.066 0.934 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.154 0.846 34 H 0.229 0.771 35 H 0.245 0.755 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.124 0.876 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.529 -28.422 5.700 30.217 hybrid contribution -0.110 1.756 -0.558 1.846 sum -8.639 -26.666 5.142 28.498 Atomic orbital electron populations 1.22969 0.78732 1.04302 1.00897 1.87749 1.21950 1.26936 1.95673 1.22554 0.92767 0.85292 1.01572 1.21748 0.92386 0.77465 1.07387 1.48527 1.32589 1.12515 1.20114 1.23357 0.89809 0.93823 0.94118 1.20244 1.11276 0.97043 1.04175 1.17451 0.80284 0.81298 0.82695 1.90735 1.52053 1.76605 1.28100 1.45756 1.45919 1.12851 1.31959 1.21287 0.93138 0.88096 0.95565 1.22484 0.98662 0.93855 0.97023 1.23729 0.98947 0.99261 0.97383 1.21441 0.94300 0.88037 0.92998 1.42292 1.11535 1.36394 1.45512 1.19679 0.95957 1.08908 1.12818 0.90595 1.25519 0.96478 1.01627 1.03051 1.69801 1.07598 1.37043 1.47452 0.85170 0.77799 0.77902 0.79071 1.21539 1.22369 1.19488 1.23344 0.99598 0.97554 0.96873 1.24463 0.92609 0.98404 0.94541 1.77160 1.25044 0.97485 1.14292 0.93418 0.87696 0.93147 0.92582 0.92638 0.87725 0.84592 0.77137 0.75469 0.91836 0.91363 0.90002 0.89105 0.93271 0.92285 0.79332 0.94074 0.92401 0.87630 0.77449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.40 -5.21 10.70 -148.98 -1.59 -6.80 16 3 C 0.06 0.67 6.12 71.98 0.44 1.11 16 4 C 0.13 1.33 6.86 86.38 0.59 1.92 16 5 N -0.36 -5.73 3.65 -346.30 -1.26 -7.00 16 6 C 0.14 2.37 11.25 84.27 0.95 3.32 16 7 C -0.31 -6.57 6.13 -20.15 -0.12 -6.69 16 8 C 0.59 15.24 7.81 86.66 0.68 15.91 16 9 O -0.59 -19.00 16.90 -4.06 -0.07 -19.07 16 10 N -0.71 -16.61 5.55 -466.36 -2.59 -19.19 16 11 C 0.14 3.54 5.50 86.38 0.47 4.01 16 12 C -0.10 -2.83 3.62 -10.27 -0.04 -2.87 16 13 C -0.15 -4.76 7.44 31.18 0.23 -4.53 16 14 C 0.14 5.35 4.57 45.58 0.21 5.56 16 15 N -0.72 -35.20 5.31 -320.15 -1.70 -36.90 16 16 C -0.24 -13.21 9.97 84.03 0.84 -12.37 16 17 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 18 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 19 N -0.97 -58.35 13.06 21.65 0.28 -58.07 16 20 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 24 C -0.13 -4.03 7.39 31.13 0.23 -3.80 16 25 C 0.09 1.68 11.50 85.65 0.99 2.67 16 26 N -0.32 -6.53 12.33 -56.27 -0.69 -7.22 16 27 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.14 0.67 8.06 -2.39 -0.02 0.65 16 34 H 0.21 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.41 8.12 7.43 -92.71 -0.69 7.43 16 36 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.07 1.71 7.87 -2.39 -0.02 1.69 16 38 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.09 2.44 7.92 -2.39 -0.02 2.42 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 42 H 0.37 19.61 7.90 -92.71 -0.73 18.88 16 43 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.11 2.60 8.10 -2.39 -0.02 2.58 16 46 H 0.21 2.98 7.50 -2.92 -0.02 2.96 16 Total: -1.00 -72.71 391.53 1.15 -71.55 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -0.43 Total: 33.05 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 7.18 Total: 1.97 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -5.96 Total: -128.38 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -1.66 Total: -25.87 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -72.71 1.15 -71.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091346651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.043 kcal (2) G-P(sol) polarization free energy of solvation -72.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds