Wall clock time and date at job start Fri Apr 10 2020 18:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35038 * 124.88399 * 2 1 4 4 C 1.35369 * 107.22809 * 180.29695 * 3 2 1 5 5 C 1.41501 * 105.50343 * 359.60742 * 4 3 2 6 6 C 1.47712 * 126.51880 * 180.12890 * 5 4 3 7 7 O 1.21570 * 119.99388 * 8.35406 * 6 5 4 8 8 N 1.34773 * 119.99997 * 188.34917 * 6 5 4 9 9 C 1.46930 * 120.63175 * 6.35968 * 8 6 5 10 10 C 1.53620 * 108.54235 * 126.36410 * 9 8 6 11 11 C 1.53043 * 109.23918 * 54.85980 * 10 9 8 12 12 N 1.46505 * 109.45651 * 178.48978 * 11 10 9 13 13 C 1.36935 * 120.00048 * 60.06852 * 12 11 10 14 14 H 1.08001 * 119.99858 * 325.13528 * 13 12 11 15 15 C 1.38810 * 119.99769 * 145.14145 * 13 12 11 16 16 N 1.31614 * 120.00299 * 341.29851 * 15 13 12 17 17 Si 1.86809 * 120.00005 * 161.30219 * 15 13 12 18 18 H 1.48501 * 109.46896 * 59.99529 * 17 15 13 19 19 H 1.48492 * 109.47290 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46696 * 299.99629 * 17 15 13 21 21 C 1.46499 * 119.99762 * 240.06594 * 12 11 10 22 22 C 1.52998 * 109.47392 * 83.94495 * 21 12 11 23 23 O 1.42903 * 109.46914 * 64.99656 * 22 21 12 24 24 C 1.53037 * 109.53828 * 298.50406 * 11 10 9 25 25 C 1.46930 * 120.62862 * 186.63712 * 8 6 5 26 26 N 1.28474 * 124.88886 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.46869 * 89.99999 * 1 2 3 28 28 H 1.09004 * 109.46819 * 209.99882 * 1 2 3 29 29 H 1.08993 * 109.47411 * 329.99888 * 1 2 3 30 30 H 1.08000 * 126.38532 * 0.03615 * 3 2 1 31 31 H 1.07998 * 127.24187 * 179.69912 * 4 3 2 32 32 H 1.08996 * 109.58444 * 246.20114 * 9 8 6 33 33 H 1.09001 * 109.58218 * 6.62401 * 9 8 6 34 34 H 1.09004 * 109.63677 * 294.86523 * 10 9 8 35 35 H 1.09001 * 109.43055 * 174.72242 * 10 9 8 36 36 H 1.08996 * 109.45198 * 58.52462 * 11 10 9 37 37 H 0.97004 * 120.00318 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.47024 * 203.94657 * 21 12 11 39 39 H 1.09003 * 109.47305 * 323.94278 * 21 12 11 40 40 H 1.08998 * 109.47267 * 185.00289 * 22 21 12 41 41 H 1.09003 * 109.47153 * 305.00059 * 22 21 12 42 42 H 0.96703 * 113.99926 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.50322 * 301.41985 * 24 11 10 44 44 H 1.09004 * 109.50053 * 181.31628 * 24 11 10 45 45 H 1.08994 * 109.58264 * 353.37535 * 25 8 6 46 46 H 1.08995 * 109.58388 * 113.65990 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1077 0.0000 4 6 3.5272 0.6972 -0.0067 5 6 3.4741 -0.7168 -0.0013 6 6 4.6273 -1.6398 -0.0027 7 8 5.7534 -1.2057 0.1441 8 7 4.4312 -2.9631 -0.1665 9 6 3.0961 -3.4885 -0.4831 10 6 3.1999 -4.3579 -1.7454 11 6 4.2642 -5.4361 -1.5289 12 7 4.3418 -6.2905 -2.7165 13 6 4.6651 -5.7470 -3.9311 14 1 4.3323 -4.7508 -4.1827 15 6 5.4205 -6.4764 -4.8389 16 7 6.1297 -7.5061 -4.4277 17 14 5.4306 -5.9966 -6.6442 18 1 5.9417 -4.6094 -6.7848 19 1 6.3092 -6.9262 -7.3986 20 1 4.0493 -6.0724 -7.1842 21 6 4.0735 -7.7264 -2.6046 22 6 2.5650 -7.9708 -2.6794 23 8 2.0853 -7.5962 -3.9723 24 6 5.6224 -4.7736 -1.2880 25 6 5.5473 -3.9083 -0.0260 26 7 2.1998 -1.0538 -0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.8905 2.1305 0.0005 31 1 4.4107 1.3182 -0.0131 32 1 2.7335 -4.0906 0.3500 33 1 2.4109 -2.6602 -0.6635 34 1 3.4793 -3.7364 -2.5962 35 1 2.2373 -4.8307 -1.9401 36 1 3.9966 -6.0415 -0.6629 37 1 6.6579 -8.0156 -5.0620 38 1 4.5678 -8.2530 -3.4209 39 1 4.4543 -8.0940 -1.6517 40 1 2.3591 -9.0272 -2.5074 41 1 2.0621 -7.3741 -1.9184 42 1 1.1344 -7.7250 -4.0916 43 1 5.8791 -4.1482 -2.1430 44 1 6.3842 -5.5422 -1.1571 45 1 6.4798 -3.3571 0.0953 46 1 5.3817 -4.5423 0.8450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098561084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:50 Heat of formation + Delta-G solvation = 41.163906 kcal Electronic energy + Delta-G solvation = -28502.526215 eV Core-core repulsion = 24623.802285 eV Total energy + Delta-G solvation = -3878.723931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.74097 -39.53285 -37.40209 -36.05447 -34.54476 -33.64134 -31.96914 -31.07763 -30.31343 -30.15785 -27.89893 -27.33930 -24.91047 -23.51193 -22.92212 -21.96720 -21.51677 -20.46054 -19.81462 -18.87708 -17.35131 -16.79784 -16.52314 -16.38815 -16.02285 -15.50150 -14.79855 -14.69601 -14.31587 -14.11458 -13.79530 -13.66349 -13.40059 -13.16671 -13.12769 -12.96622 -12.81022 -12.64633 -12.43145 -12.05020 -11.93946 -11.36381 -11.08673 -10.86712 -10.78816 -10.57506 -10.51103 -10.37342 -9.98154 -9.82014 -9.76769 -9.63375 -9.38234 -9.26358 -9.14620 -9.01382 -8.29589 -8.20916 -6.44308 -5.61573 -3.15437 1.57577 2.08413 2.30513 3.32558 3.50577 3.54277 3.58955 3.60169 4.18776 4.60944 4.62992 4.70134 4.75969 5.02254 5.12974 5.24477 5.37046 5.46430 5.52833 5.57517 5.67711 5.69384 5.77217 5.91170 5.94683 6.08896 6.11138 6.19250 6.23046 6.37964 6.43752 6.50019 6.58712 6.70164 6.74127 6.82586 6.91810 7.00159 7.24825 7.31945 7.67865 7.81856 7.86823 7.96980 8.45343 8.51362 8.71840 9.34885 9.99119 10.52264 11.40782 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.003704 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.656212 B = 7558.282086 C = 7846.560357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.292 5.292 3 C -0.020 4.020 4 C -0.180 4.180 5 C -0.005 4.005 6 C 0.598 3.402 7 O -0.543 6.543 8 N -0.590 5.590 9 C 0.090 3.910 10 C -0.137 4.137 11 C 0.176 3.824 12 N -0.572 5.572 13 C -0.227 4.227 14 H 0.056 0.944 15 C 0.011 3.989 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.286 1.286 19 H -0.293 1.293 20 H -0.284 1.284 21 C 0.139 3.861 22 C 0.059 3.941 23 O -0.543 6.543 24 C -0.133 4.133 25 C 0.112 3.888 26 N -0.258 5.258 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.180 0.820 31 H 0.162 0.838 32 H 0.058 0.942 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.252 0.748 38 H 0.112 0.888 39 H 0.034 0.966 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.348 0.652 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.403 11.880 11.290 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.079 5.079 3 C -0.163 4.163 4 C -0.208 4.208 5 C -0.165 4.165 6 C 0.385 3.615 7 O -0.420 6.420 8 N -0.321 5.321 9 C -0.034 4.034 10 C -0.177 4.177 11 C 0.068 3.932 12 N -0.291 5.291 13 C -0.357 4.357 14 H 0.073 0.927 15 C -0.187 4.187 16 N -0.544 5.544 17 Si 0.728 3.272 18 H -0.212 1.212 19 H -0.219 1.219 20 H -0.210 1.210 21 C 0.012 3.988 22 C -0.021 4.021 23 O -0.344 6.344 24 C -0.173 4.173 25 C -0.010 4.010 26 N -0.094 5.094 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.198 0.802 31 H 0.179 0.821 32 H 0.076 0.924 33 H 0.134 0.866 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.130 0.870 39 H 0.052 0.948 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.190 0.810 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.874 11.206 11.182 20.405 hybrid contribution -0.353 0.672 -0.916 1.190 sum -13.227 11.879 10.266 20.529 Atomic orbital electron populations 1.22162 0.73421 1.05313 1.04518 1.45618 1.07803 1.03378 1.51116 1.22833 0.91025 0.93670 1.08756 1.21779 0.97308 0.93582 1.08133 1.22058 0.90679 0.94233 1.09527 1.16989 0.86351 0.81311 0.76893 1.90755 1.23011 1.76611 1.51590 1.47974 1.11081 1.05262 1.67827 1.22582 0.83461 0.99848 0.97503 1.22416 1.00513 0.98281 0.96454 1.20342 0.92005 0.90908 0.89912 1.43740 1.79023 1.02837 1.03480 1.18757 1.25202 1.00601 0.91143 0.92679 1.24972 0.96203 0.98864 0.98663 1.69872 1.29562 1.21761 1.33158 0.86455 0.77352 0.77422 0.85996 1.21220 1.21932 1.21022 1.21113 0.89387 0.86839 1.01436 1.23113 1.00252 0.94764 0.83970 1.86868 1.25174 1.88925 1.33475 1.22297 1.00165 0.98791 0.96027 1.21795 0.89562 0.90914 0.98768 1.73494 1.03137 1.12879 1.19889 0.89657 0.88527 0.88777 0.80240 0.82086 0.92388 0.86603 0.91595 0.91755 0.93624 0.93848 0.87045 0.94821 0.96387 0.96167 0.80974 0.91038 0.90994 0.89643 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 11.31 59.84 0.68 1.10 16 2 N -0.29 -2.89 3.70 -68.13 -0.25 -3.15 16 3 C -0.02 -0.19 11.46 -17.16 -0.20 -0.38 16 4 C -0.18 -2.27 10.82 -39.36 -0.43 -2.69 16 5 C -0.01 -0.08 6.81 -82.77 -0.56 -0.64 16 6 C 0.60 10.82 7.69 -12.39 -0.10 10.73 16 7 O -0.54 -11.14 16.36 5.30 0.09 -11.05 16 8 N -0.59 -10.23 2.97 -173.66 -0.52 -10.75 16 9 C 0.09 1.43 6.14 -3.49 -0.02 1.41 16 10 C -0.14 -2.54 5.32 -26.39 -0.14 -2.68 16 11 C 0.18 3.60 2.59 -67.89 -0.18 3.42 16 12 N -0.57 -13.87 2.34 -165.62 -0.39 -14.26 16 13 C -0.23 -6.21 8.10 -15.06 -0.12 -6.33 16 14 H 0.06 1.55 6.85 -52.49 -0.36 1.20 16 15 C 0.01 0.31 5.00 -17.43 -0.09 0.23 16 16 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16 17 Si 0.90 22.82 29.59 -169.99 -5.03 17.79 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 20 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 21 C 0.14 3.25 5.55 -4.04 -0.02 3.23 16 22 C 0.06 1.17 7.38 37.16 0.27 1.45 16 23 O -0.54 -11.51 13.42 -35.23 -0.47 -11.98 16 24 C -0.13 -2.70 5.30 -26.61 -0.14 -2.84 16 25 C 0.11 1.95 6.44 -3.71 -0.02 1.92 16 26 N -0.26 -3.48 8.47 33.42 0.28 -3.20 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.18 8.13 -51.93 -0.42 -0.24 16 30 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.12 1.79 4.17 -68.92 -0.29 1.50 16 34 H 0.07 1.40 7.04 -51.93 -0.37 1.04 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.05 0.88 7.87 -51.93 -0.41 0.47 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.11 3.04 5.28 -51.93 -0.27 2.77 16 39 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.35 5.36 9.12 45.56 0.42 5.77 16 43 H 0.07 1.66 7.71 -51.93 -0.40 1.26 16 44 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 45 H 0.09 1.54 7.00 -51.93 -0.36 1.17 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -35.46 370.05 -7.40 -42.86 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.25 Total: 5.82 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -1.06 Total: 7.90 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.25 Total: -56.92 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.39 Total: -23.03 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.03 Total: 17.79 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.46 -7.40 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098561084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.028 kcal (2) G-P(sol) polarization free energy of solvation -35.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds