Wall clock time and date at job start Fri Apr 10 2020 18:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40086 * 126.03653 * 2 1 4 4 C 1.30835 * 108.20261 * 180.02562 * 3 2 1 5 5 C 1.39866 * 108.20459 * 359.77402 * 4 3 2 6 6 C 1.34946 * 126.03802 * 180.02562 * 2 1 3 7 7 C 1.50703 * 126.12546 * 359.94420 * 6 2 1 8 8 C 1.52991 * 109.47224 * 264.99768 * 7 6 2 9 9 C 1.50703 * 109.47224 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99949 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00364 * 180.02562 * 9 8 7 12 12 C 1.46493 * 120.00101 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.46575 * 34.97142 * 12 11 9 14 14 C 1.53041 * 109.46017 * 274.99784 * 12 11 9 15 15 C 1.53188 * 109.31266 * 178.61716 * 14 12 11 16 16 N 1.46926 * 108.77834 * 54.63692 * 15 14 12 17 17 C 1.36933 * 120.63263 * 126.37312 * 16 15 14 18 18 H 1.08007 * 119.99998 * 332.44896 * 17 16 15 19 19 C 1.38810 * 120.00289 * 152.18092 * 17 16 15 20 20 N 1.31615 * 119.99831 * 343.15131 * 19 17 16 21 21 Si 1.86800 * 120.00046 * 163.15229 * 19 17 16 22 22 H 1.48494 * 109.47093 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46909 * 120.00045 * 21 19 17 24 24 H 1.48499 * 109.47179 * 239.99913 * 21 19 17 25 25 C 1.46919 * 118.73504 * 306.63930 * 16 15 14 26 26 C 1.52765 * 109.00848 * 53.31629 * 25 16 15 27 27 H 1.08996 * 109.36391 * 65.49078 * 26 25 16 28 28 O 1.42903 * 109.59011 * 185.53663 * 26 25 16 29 29 H 1.09007 * 109.47433 * 269.97918 * 1 2 3 30 30 H 1.08998 * 109.46996 * 29.97685 * 1 2 3 31 31 H 1.08997 * 109.47433 * 149.97888 * 1 2 3 32 32 H 1.08006 * 125.89404 * 180.02562 * 4 3 2 33 33 H 1.07997 * 126.04080 * 180.23014 * 5 4 3 34 34 H 1.09002 * 109.46515 * 144.99811 * 7 6 2 35 35 H 1.09003 * 109.47045 * 25.00175 * 7 6 2 36 36 H 1.09002 * 109.47339 * 60.00548 * 8 7 6 37 37 H 1.09003 * 109.47442 * 300.00164 * 8 7 6 38 38 H 0.97003 * 119.99409 * 359.97438 * 11 9 8 39 39 H 1.08994 * 109.49781 * 58.66458 * 14 12 11 40 40 H 1.08999 * 109.49635 * 298.56510 * 14 12 11 41 41 H 1.09002 * 109.58586 * 294.84582 * 15 14 12 42 42 H 1.09003 * 109.58579 * 174.42321 * 15 14 12 43 43 H 0.97000 * 120.00217 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.58704 * 173.14472 * 25 16 15 45 45 H 1.09003 * 109.59490 * 293.56909 * 25 16 15 46 46 H 0.96701 * 113.99659 * 299.97469 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 3.5436 -0.6665 0.0043 6 6 2.2589 -1.0912 -0.0005 7 6 1.7973 -2.5258 0.0001 8 6 1.7619 -3.0496 1.4371 9 6 1.3009 -4.4844 1.4375 10 8 1.0280 -5.0340 0.3914 11 7 1.1919 -5.1569 2.6005 12 6 0.7443 -6.5518 2.6008 13 1 1.1222 -7.0547 1.7107 14 6 -0.7854 -6.5963 2.6009 15 6 -1.2498 -8.0558 2.5664 16 7 -0.6251 -8.7774 3.6834 17 6 -1.3900 -9.4852 4.5717 18 1 -2.4131 -9.1926 4.7562 19 6 -0.8522 -10.5821 5.2307 20 7 0.2486 -11.1458 4.7803 21 14 -1.6907 -11.2582 6.7569 22 1 -2.9024 -10.4528 7.0537 23 1 -2.0816 -12.6714 6.5219 24 1 -0.7550 -11.1883 7.9079 25 6 0.8354 -8.7202 3.8326 26 6 1.2769 -7.2578 3.8499 27 1 0.8796 -6.7708 4.7404 28 8 2.7042 -7.1884 3.8648 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 4.4054 1.3711 -0.0003 33 1 4.4210 -1.2963 0.0086 34 1 2.4869 -3.1295 -0.5899 35 1 0.7990 -2.5864 -0.4335 36 1 1.0723 -2.4459 2.0270 37 1 2.7602 -2.9890 1.8706 38 1 1.4106 -4.7174 3.4371 39 1 -1.1647 -6.0731 1.7232 40 1 -1.1633 -6.1156 3.5032 41 1 -0.9500 -8.5124 1.6231 42 1 -2.3344 -8.0966 2.6661 43 1 0.6242 -11.9125 5.2406 44 1 1.1263 -9.1992 4.7676 45 1 1.3088 -9.2321 2.9948 46 1 3.1108 -7.6168 4.6305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099860440.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:52 Heat of formation + Delta-G solvation = 6.811941 kcal Electronic energy + Delta-G solvation = -27231.548390 eV Core-core repulsion = 23351.334846 eV Total energy + Delta-G solvation = -3880.213544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.47779 -39.83255 -37.99712 -35.31144 -34.52416 -34.18038 -33.20919 -32.19610 -30.02898 -29.15760 -28.80597 -26.98348 -25.62739 -24.33282 -22.44856 -21.77140 -21.36712 -20.23691 -19.85647 -19.42285 -17.49592 -16.99464 -16.65684 -16.35420 -16.01101 -15.62951 -15.60278 -14.87321 -14.62013 -14.20376 -13.98980 -13.82325 -13.60288 -13.55194 -13.11536 -13.09402 -12.87861 -12.67519 -12.41955 -12.28360 -12.19237 -11.98967 -11.71695 -11.38270 -11.25733 -10.88680 -10.83453 -10.81209 -10.45297 -10.22808 -10.06132 -9.91979 -9.60926 -9.49035 -9.35959 -8.79328 -8.73513 -8.57392 -6.82024 -5.90791 -3.34597 1.60893 2.27280 2.60755 2.75848 3.28593 3.33766 3.38064 3.39957 4.29773 4.32947 4.37836 4.55737 4.68529 4.70119 4.85314 4.91752 5.02991 5.12085 5.22446 5.26864 5.35439 5.37058 5.43129 5.53409 5.55184 5.58170 5.78283 5.86552 5.95709 5.99122 6.06680 6.19241 6.38912 6.42866 6.43042 6.65705 6.75721 6.80703 6.86389 7.08083 7.41644 7.47920 7.67230 7.70422 8.05423 8.32020 8.37735 9.07531 9.70255 10.26300 11.17731 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030595 B = 0.002288 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.975996 B =12235.529567 C =12576.090676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.372 5.372 3 N -0.303 5.303 4 C 0.046 3.954 5 C -0.273 4.273 6 C 0.090 3.910 7 C -0.042 4.042 8 C -0.133 4.133 9 C 0.512 3.488 10 O -0.545 6.545 11 N -0.715 5.715 12 C 0.161 3.839 13 H 0.088 0.912 14 C -0.139 4.139 15 C 0.145 3.855 16 N -0.589 5.589 17 C -0.255 4.255 18 H 0.069 0.931 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.904 3.096 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.288 1.288 25 C 0.148 3.852 26 C 0.072 3.928 27 H 0.051 0.949 28 O -0.573 6.573 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.182 0.818 33 H 0.148 0.852 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.397 0.603 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.024 0.976 42 H 0.060 0.940 43 H 0.255 0.745 44 H 0.094 0.906 45 H 0.029 0.971 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.350 19.762 -5.338 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.155 5.155 3 N -0.124 5.124 4 C -0.140 4.140 5 C -0.302 4.302 6 C -0.038 4.038 7 C -0.081 4.081 8 C -0.174 4.174 9 C 0.297 3.703 10 O -0.423 6.423 11 N -0.364 5.364 12 C 0.058 3.942 13 H 0.106 0.894 14 C -0.179 4.179 15 C 0.018 3.982 16 N -0.313 5.313 17 C -0.385 4.385 18 H 0.087 0.913 19 C -0.197 4.197 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.215 1.215 25 C 0.020 3.980 26 C 0.011 3.989 27 H 0.069 0.931 28 O -0.377 6.377 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.199 0.801 33 H 0.166 0.834 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.231 0.769 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.112 0.888 45 H 0.047 0.953 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.172 20.549 -6.586 21.811 hybrid contribution 0.403 -1.183 1.825 2.212 sum 3.575 19.366 -4.762 20.261 Atomic orbital electron populations 1.21887 0.74440 1.04601 1.03544 1.48523 1.06541 1.03435 1.56979 1.77358 1.01923 1.07984 1.25137 1.23832 0.95194 0.95139 0.99811 1.21288 0.96380 0.95023 1.17521 1.21139 0.91349 0.90378 1.00939 1.19986 1.03660 0.87719 0.96758 1.21601 1.04022 0.93685 0.98113 1.20460 0.77574 0.88227 0.83997 1.90708 1.50251 1.69966 1.31377 1.46117 1.67661 1.13928 1.08683 1.20992 0.94228 0.79908 0.99119 0.89411 1.22407 0.93898 1.00295 1.01296 1.20943 0.97005 0.89100 0.91174 1.43996 1.01865 1.57412 1.28041 1.19243 0.96630 1.06169 1.16438 0.91319 1.25090 0.98285 0.95800 1.00485 1.70034 1.22788 1.22505 1.39239 0.86206 0.78906 0.78630 0.82941 1.20186 1.21604 1.21503 1.21331 0.84407 0.89429 1.02789 1.22882 0.80014 1.00059 0.95898 0.93127 1.86411 1.20006 1.80940 1.50392 0.90626 0.89282 0.89250 0.80072 0.83447 0.88190 0.89867 0.89239 0.88292 0.76939 0.91867 0.92077 0.95812 0.92119 0.93506 0.88829 0.95260 0.77713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.27 59.85 0.67 1.33 16 2 N -0.37 -3.79 4.01 -63.88 -0.26 -4.05 16 3 N -0.30 -3.51 12.58 30.62 0.39 -3.13 16 4 C 0.05 0.44 12.02 -17.37 -0.21 0.24 16 5 C -0.27 -2.63 10.72 -40.02 -0.43 -3.06 16 6 C 0.09 0.89 6.18 -82.26 -0.51 0.38 16 7 C -0.04 -0.39 4.79 -27.89 -0.13 -0.53 16 8 C -0.13 -1.24 5.68 -27.89 -0.16 -1.40 16 9 C 0.51 6.89 7.79 -10.98 -0.09 6.81 16 10 O -0.55 -9.40 15.64 5.56 0.09 -9.31 16 11 N -0.71 -9.81 4.92 -53.77 -0.26 -10.07 16 12 C 0.16 2.78 2.12 -67.89 -0.14 2.64 16 13 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16 14 C -0.14 -2.39 5.65 -26.61 -0.15 -2.54 16 15 C 0.14 2.97 6.52 -3.71 -0.02 2.94 16 16 N -0.59 -14.11 3.00 -172.58 -0.52 -14.63 16 17 C -0.26 -6.70 9.58 -15.06 -0.14 -6.84 16 18 H 0.07 1.77 7.88 -52.48 -0.41 1.36 16 19 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 20 N -0.90 -25.17 11.18 55.49 0.62 -24.55 16 21 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.15 3.33 4.90 -3.93 -0.02 3.31 16 26 C 0.07 1.30 3.13 -26.83 -0.08 1.21 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 O -0.57 -9.40 13.16 -35.23 -0.46 -9.86 16 29 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.49 6.98 -51.93 -0.36 0.13 16 32 H 0.18 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 35 H 0.08 0.78 6.91 -51.93 -0.36 0.42 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.40 4.53 8.60 -40.82 -0.35 4.18 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 43 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.09 2.31 6.05 -51.93 -0.31 2.00 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.38 4.93 9.08 45.56 0.41 5.35 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -33.40 377.50 -7.65 -41.05 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.40 Total: 8.62 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.50 Total: 4.46 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.03 Total: -56.43 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.38 Total: -19.17 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.40 -7.65 -41.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099860440.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.864 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds