Wall clock time and date at job start Fri Apr 10 2020 18:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40086 * 126.03653 * 2 1 4 4 C 1.30835 * 108.20261 * 180.02562 * 3 2 1 5 5 C 1.39866 * 108.20459 * 359.77402 * 4 3 2 6 6 C 1.34946 * 126.03802 * 180.02562 * 2 1 3 7 7 C 1.50703 * 126.12546 * 359.94420 * 6 2 1 8 8 C 1.52991 * 109.47224 * 264.99768 * 7 6 2 9 9 C 1.50703 * 109.47224 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99949 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00364 * 180.02562 * 9 8 7 12 12 C 1.46493 * 120.00101 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.46575 * 34.97142 * 12 11 9 14 14 C 1.53041 * 109.46017 * 274.99784 * 12 11 9 15 15 C 1.53188 * 109.31266 * 178.61716 * 14 12 11 16 16 N 1.46926 * 108.77834 * 54.63692 * 15 14 12 17 17 C 1.36933 * 120.63263 * 126.37312 * 16 15 14 18 18 H 1.08007 * 119.99998 * 332.44896 * 17 16 15 19 19 C 1.38810 * 120.00289 * 152.18092 * 17 16 15 20 20 N 1.31615 * 119.99831 * 343.15131 * 19 17 16 21 21 Si 1.86800 * 120.00046 * 163.15229 * 19 17 16 22 22 H 1.48494 * 109.47093 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46909 * 120.00045 * 21 19 17 24 24 H 1.48499 * 109.47179 * 239.99913 * 21 19 17 25 25 C 1.46919 * 118.73504 * 306.63930 * 16 15 14 26 26 C 1.52765 * 109.00848 * 53.31629 * 25 16 15 27 27 H 1.08996 * 109.36391 * 65.49078 * 26 25 16 28 28 O 1.42903 * 109.59011 * 185.53663 * 26 25 16 29 29 H 1.09007 * 109.47433 * 269.97918 * 1 2 3 30 30 H 1.08998 * 109.46996 * 29.97685 * 1 2 3 31 31 H 1.08997 * 109.47433 * 149.97888 * 1 2 3 32 32 H 1.08006 * 125.89404 * 180.02562 * 4 3 2 33 33 H 1.07997 * 126.04080 * 180.23014 * 5 4 3 34 34 H 1.09002 * 109.46515 * 144.99811 * 7 6 2 35 35 H 1.09003 * 109.47045 * 25.00175 * 7 6 2 36 36 H 1.09002 * 109.47339 * 60.00548 * 8 7 6 37 37 H 1.09003 * 109.47442 * 300.00164 * 8 7 6 38 38 H 0.97003 * 119.99409 * 359.97438 * 11 9 8 39 39 H 1.08994 * 109.49781 * 58.66458 * 14 12 11 40 40 H 1.08999 * 109.49635 * 298.56510 * 14 12 11 41 41 H 1.09002 * 109.58586 * 294.84582 * 15 14 12 42 42 H 1.09003 * 109.58579 * 174.42321 * 15 14 12 43 43 H 0.97000 * 120.00217 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.58704 * 173.14472 * 25 16 15 45 45 H 1.09003 * 109.59490 * 293.56909 * 25 16 15 46 46 H 0.96701 * 113.99659 * 299.97469 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 3.5436 -0.6665 0.0043 6 6 2.2589 -1.0912 -0.0005 7 6 1.7973 -2.5258 0.0001 8 6 1.7619 -3.0496 1.4371 9 6 1.3009 -4.4844 1.4375 10 8 1.0280 -5.0340 0.3914 11 7 1.1919 -5.1569 2.6005 12 6 0.7443 -6.5518 2.6008 13 1 1.1222 -7.0547 1.7107 14 6 -0.7854 -6.5963 2.6009 15 6 -1.2498 -8.0558 2.5664 16 7 -0.6251 -8.7774 3.6834 17 6 -1.3900 -9.4852 4.5717 18 1 -2.4131 -9.1926 4.7562 19 6 -0.8522 -10.5821 5.2307 20 7 0.2486 -11.1458 4.7803 21 14 -1.6907 -11.2582 6.7569 22 1 -2.9024 -10.4528 7.0537 23 1 -2.0816 -12.6714 6.5219 24 1 -0.7550 -11.1883 7.9079 25 6 0.8354 -8.7202 3.8326 26 6 1.2769 -7.2578 3.8499 27 1 0.8796 -6.7708 4.7404 28 8 2.7042 -7.1884 3.8648 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 4.4054 1.3711 -0.0003 33 1 4.4210 -1.2963 0.0086 34 1 2.4869 -3.1295 -0.5899 35 1 0.7990 -2.5864 -0.4335 36 1 1.0723 -2.4459 2.0270 37 1 2.7602 -2.9890 1.8706 38 1 1.4106 -4.7174 3.4371 39 1 -1.1647 -6.0731 1.7232 40 1 -1.1633 -6.1156 3.5032 41 1 -0.9500 -8.5124 1.6231 42 1 -2.3344 -8.0966 2.6661 43 1 0.6242 -11.9125 5.2406 44 1 1.1263 -9.1992 4.7676 45 1 1.3088 -9.2321 2.9948 46 1 3.1108 -7.6168 4.6305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099860440.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:51 Heat of formation + Delta-G solvation = -18.259534 kcal Electronic energy + Delta-G solvation = -27232.635571 eV Core-core repulsion = 23351.334846 eV Total energy + Delta-G solvation = -3881.300724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.18462 -41.05282 -39.43992 -36.88365 -35.83895 -35.06380 -33.99825 -33.78533 -31.44289 -30.60499 -30.03002 -27.57712 -27.18200 -25.52166 -24.00834 -23.35154 -22.05905 -21.41671 -20.99873 -20.51124 -18.97113 -18.19742 -18.08637 -17.46411 -17.20033 -16.69686 -16.52825 -16.31237 -15.63906 -15.52554 -15.28486 -15.16811 -14.88263 -14.66912 -14.42650 -14.13150 -13.83249 -13.68962 -13.46949 -13.39915 -13.29662 -13.18053 -13.02276 -12.97065 -12.69043 -12.51569 -12.12287 -12.06994 -11.98640 -11.87594 -11.56060 -11.38280 -11.01010 -10.80808 -10.61545 -10.21090 -9.99949 -9.44836 -8.76545 -7.91266 -5.38522 0.89085 1.47098 1.50027 1.60185 1.65236 1.70135 1.89886 2.24616 2.49169 3.12144 3.26661 3.53292 3.63902 3.74128 3.88422 3.94686 3.99529 4.08392 4.20382 4.32321 4.37251 4.40534 4.43230 4.47341 4.54986 4.65804 4.67470 4.74378 4.85086 4.90522 4.92760 4.96473 5.04966 5.07431 5.16528 5.30138 5.34059 5.52940 5.56967 5.63737 5.77172 6.10933 6.33009 6.62614 6.77446 6.82519 7.09881 7.32263 7.77422 8.30092 9.15617 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030595 B = 0.002288 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.975996 B =12235.529567 C =12576.090676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.379 5.379 3 N -0.337 5.337 4 C 0.041 3.959 5 C -0.283 4.283 6 C 0.085 3.915 7 C -0.035 4.035 8 C -0.119 4.119 9 C 0.511 3.489 10 O -0.585 6.585 11 N -0.706 5.706 12 C 0.169 3.831 13 H 0.055 0.945 14 C -0.122 4.122 15 C 0.140 3.860 16 N -0.605 5.605 17 C -0.263 4.263 18 H 0.073 0.927 19 C -0.049 4.049 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.265 1.265 23 H -0.296 1.296 24 H -0.287 1.287 25 C 0.156 3.844 26 C 0.092 3.908 27 H 0.066 0.934 28 O -0.573 6.573 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.207 0.793 33 H 0.161 0.839 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.413 0.587 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.008 0.992 42 H 0.066 0.934 43 H 0.251 0.749 44 H 0.070 0.930 45 H -0.007 1.007 46 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 21.859 -4.275 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.162 5.162 3 N -0.159 5.159 4 C -0.143 4.143 5 C -0.312 4.312 6 C -0.043 4.043 7 C -0.074 4.074 8 C -0.159 4.159 9 C 0.300 3.700 10 O -0.466 6.466 11 N -0.356 5.356 12 C 0.064 3.936 13 H 0.073 0.927 14 C -0.162 4.162 15 C 0.014 3.986 16 N -0.330 5.330 17 C -0.393 4.393 18 H 0.091 0.909 19 C -0.245 4.245 20 N -0.581 5.581 21 Si 0.797 3.203 22 H -0.189 1.189 23 H -0.223 1.223 24 H -0.214 1.214 25 C 0.029 3.971 26 C 0.031 3.969 27 H 0.083 0.917 28 O -0.379 6.379 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.224 0.776 33 H 0.179 0.821 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.249 0.751 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.011 0.989 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 2.969 22.696 -5.505 23.542 hybrid contribution 0.484 -1.858 1.407 2.380 sum 3.453 20.838 -4.099 21.516 Atomic orbital electron populations 1.22139 0.73004 1.05464 1.04647 1.48791 1.07528 1.03108 1.56727 1.77314 1.02901 1.09136 1.26506 1.24320 0.95496 0.95697 0.98822 1.21582 0.96894 0.95308 1.17403 1.21213 0.91627 0.90382 1.01072 1.19886 1.03404 0.87370 0.96765 1.21546 1.05326 0.90526 0.98497 1.21162 0.76377 0.89547 0.82965 1.90703 1.51910 1.71170 1.32786 1.45912 1.67541 1.12341 1.09835 1.20614 0.94078 0.81782 0.97129 0.92722 1.22190 0.93870 0.97744 1.02362 1.21058 0.97283 0.90810 0.89425 1.44250 1.02294 1.57645 1.28790 1.19579 0.97033 1.06179 1.16526 0.90939 1.25845 0.99122 0.96341 1.03179 1.70191 1.24370 1.23050 1.40505 0.85181 0.78245 0.77427 0.79414 1.18901 1.22324 1.21359 1.21141 0.83848 0.92233 0.99916 1.22458 0.80832 0.96737 0.96850 0.91662 1.86391 1.18990 1.80938 1.51631 0.89366 0.88808 0.88097 0.77627 0.82096 0.89044 0.89950 0.86890 0.86558 0.75102 0.90843 0.90702 0.97405 0.91530 0.93938 0.91219 0.98872 0.75919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 11.27 127.77 1.44 2.47 16 2 N -0.38 -7.06 4.01 -356.03 -1.43 -8.49 16 3 N -0.34 -7.34 12.58 -57.02 -0.72 -8.06 16 4 C 0.04 0.73 12.02 85.24 1.02 1.76 16 5 C -0.28 -4.89 10.72 21.99 0.24 -4.65 16 6 C 0.09 1.52 6.18 41.41 0.26 1.77 16 7 C -0.03 -0.58 4.79 29.85 0.14 -0.44 16 8 C -0.12 -1.84 5.68 29.85 0.17 -1.67 16 9 C 0.51 12.70 7.79 87.66 0.68 13.38 16 10 O -0.59 -19.66 15.64 -3.04 -0.05 -19.70 16 11 N -0.71 -17.70 4.92 -442.40 -2.18 -19.87 16 12 C 0.17 5.67 2.12 45.02 0.10 5.76 16 13 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 14 C -0.12 -4.02 5.65 30.67 0.17 -3.85 16 15 C 0.14 5.76 6.52 86.36 0.56 6.32 16 16 N -0.61 -29.28 3.00 -699.92 -2.10 -31.38 16 17 C -0.26 -13.82 9.58 84.03 0.81 -13.02 16 18 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 19 C -0.05 -2.64 4.92 84.86 0.42 -2.23 16 20 N -0.94 -53.49 11.18 21.65 0.24 -53.24 16 21 Si 0.97 42.86 29.59 68.60 2.03 44.89 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 23 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 25 C 0.16 7.18 4.90 86.22 0.42 7.60 16 26 C 0.09 3.23 3.13 30.53 0.10 3.32 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 O -0.57 -18.03 13.16 -148.98 -1.96 -19.99 16 29 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 0.92 6.98 -2.39 -0.02 0.90 16 32 H 0.21 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.09 1.71 8.10 -2.39 -0.02 1.69 16 35 H 0.08 1.40 6.91 -2.39 -0.02 1.38 16 36 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.41 7.97 8.60 -92.71 -0.80 7.17 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.07 2.61 7.93 -2.39 -0.02 2.59 16 43 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.07 3.54 6.05 -2.38 -0.01 3.52 16 45 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 46 H 0.39 9.74 9.08 -74.06 -0.67 9.07 16 Total: -1.00 -73.17 377.50 -0.10 -73.27 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.47 Total: 26.05 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 6.52 Total: 16.53 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -6.18 Total: -121.05 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -2.01 Total: -39.70 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.17 -0.10 -73.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099860440.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.012 kcal (2) G-P(sol) polarization free energy of solvation -73.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds