Wall clock time and date at job start Fri Apr 10 2020 18:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40085 * 126.04111 * 2 1 4 4 C 1.30835 * 108.20742 * 179.97438 * 3 2 1 5 5 C 1.39871 * 108.19890 * 0.24476 * 4 3 2 6 6 C 1.34944 * 126.03257 * 179.97438 * 2 1 3 7 7 C 1.50696 * 126.13065 * 0.02562 * 6 2 1 8 8 C 1.53000 * 109.47251 * 264.99519 * 7 6 2 9 9 C 1.50695 * 109.47619 * 179.97438 * 8 7 6 10 10 O 1.21285 * 119.99988 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00090 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99690 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46180 * 324.97225 * 12 11 9 14 14 C 1.53038 * 109.46279 * 84.93295 * 12 11 9 15 15 C 1.53192 * 109.31643 * 181.38306 * 14 12 11 16 16 N 1.46929 * 108.77221 * 305.36564 * 15 14 12 17 17 C 1.36932 * 120.62747 * 233.62399 * 16 15 14 18 18 H 1.08000 * 120.00261 * 27.67251 * 17 16 15 19 19 C 1.38810 * 120.00182 * 207.66909 * 17 16 15 20 20 N 1.31619 * 119.99733 * 17.35997 * 19 17 16 21 21 Si 1.86803 * 120.00212 * 197.36645 * 19 17 16 22 22 H 1.48497 * 109.47163 * 59.99601 * 21 19 17 23 23 H 1.48499 * 109.47339 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46896 * 299.99856 * 21 19 17 25 25 C 1.46924 * 118.73863 * 53.61013 * 16 15 14 26 26 C 1.53040 * 109.45766 * 205.00109 * 12 11 9 27 27 H 1.09003 * 109.49494 * 298.56426 * 26 12 11 28 28 O 1.42900 * 109.50036 * 58.66378 * 26 12 11 29 29 H 1.09006 * 109.46722 * 90.02732 * 1 2 3 30 30 H 1.08997 * 109.47479 * 210.02606 * 1 2 3 31 31 H 1.09001 * 109.47117 * 330.03230 * 1 2 3 32 32 H 1.07993 * 125.89737 * 179.97438 * 4 3 2 33 33 H 1.07999 * 126.03642 * 179.71610 * 5 4 3 34 34 H 1.09000 * 109.47214 * 24.99613 * 7 6 2 35 35 H 1.09007 * 109.47249 * 144.99622 * 7 6 2 36 36 H 1.09000 * 109.47088 * 300.00171 * 8 7 6 37 37 H 1.08999 * 109.47139 * 59.99286 * 8 7 6 38 38 H 0.96998 * 120.00228 * 359.97438 * 11 9 8 39 39 H 1.09001 * 109.49452 * 301.33569 * 14 12 11 40 40 H 1.09007 * 109.49854 * 61.43089 * 14 12 11 41 41 H 1.08995 * 109.58531 * 185.57660 * 15 14 12 42 42 H 1.09002 * 109.69678 * 65.22219 * 15 14 12 43 43 H 0.97006 * 119.99682 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.58179 * 186.60112 * 25 16 15 45 45 H 1.08997 * 109.58883 * 66.17497 * 25 16 15 46 46 H 0.96698 * 113.99996 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 0.0006 5 6 3.5436 -0.6666 -0.0047 6 6 2.2588 -1.0913 0.0005 7 6 1.7972 -2.5258 0.0006 8 6 1.7603 -3.0496 1.4377 9 6 1.2981 -4.4839 1.4379 10 8 1.0246 -5.0331 0.3917 11 7 1.1876 -5.1561 2.6008 12 6 0.7388 -6.5507 2.6009 13 1 -0.0010 -6.6942 1.8134 14 6 1.9352 -7.4714 2.3499 15 6 1.4567 -8.9263 2.3163 16 7 0.7253 -9.2123 3.5580 17 6 1.0742 -10.2783 4.3435 18 1 2.0918 -10.6402 4.3417 19 6 0.1201 -10.8937 5.1422 20 7 -1.1601 -10.6984 4.9071 21 14 0.6531 -11.9989 6.5507 22 1 1.4739 -11.2171 7.5100 23 1 -0.5474 -12.5298 7.2450 24 1 1.4568 -13.1280 6.0171 25 6 -0.3875 -8.3326 3.9411 26 6 0.1117 -6.8844 3.9565 27 1 0.8582 -6.7652 4.7418 28 8 -0.9864 -6.0040 4.2037 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5133 32 1 4.4054 1.3709 0.0003 33 1 4.4210 -1.2964 -0.0100 34 1 0.7995 -2.5865 -0.4340 35 1 2.4875 -3.1297 -0.5886 36 1 2.7580 -2.9889 1.8722 37 1 1.0701 -2.4457 2.0268 38 1 1.4059 -4.7168 3.4376 39 1 2.3955 -7.2176 1.3950 40 1 2.6645 -7.3467 3.1504 41 1 2.3162 -9.5919 2.2369 42 1 0.7978 -9.0767 1.4611 43 1 -1.8268 -11.1282 5.4654 44 1 -0.7447 -8.6066 4.9338 45 1 -1.1974 -8.4322 3.2185 46 1 -1.4324 -6.1590 5.0476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099860443.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:16 Heat of formation + Delta-G solvation = 6.605053 kcal Electronic energy + Delta-G solvation = -27227.593565 eV Core-core repulsion = 23347.371050 eV Total energy + Delta-G solvation = -3880.222515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.47686 -39.83086 -37.98575 -35.31415 -34.52496 -34.18313 -33.19798 -32.19243 -30.03099 -29.14948 -28.79042 -26.97899 -25.61859 -24.32370 -22.44623 -21.76037 -21.36767 -20.23469 -19.86813 -19.42684 -17.48147 -16.99392 -16.65437 -16.34211 -16.01028 -15.72815 -15.52189 -14.86120 -14.63042 -14.12107 -14.02317 -13.81237 -13.65081 -13.47852 -13.27851 -13.07035 -12.73661 -12.63671 -12.50923 -12.23590 -12.22836 -11.98032 -11.71818 -11.41515 -11.24411 -10.84702 -10.83260 -10.82457 -10.45065 -10.25774 -10.05218 -9.92398 -9.61116 -9.48901 -9.35973 -8.78949 -8.73985 -8.56290 -6.82058 -5.90442 -3.33918 1.60832 2.27904 2.60533 2.75619 3.30246 3.33960 3.37768 3.38432 4.30214 4.32788 4.38338 4.55423 4.68682 4.71402 4.86957 4.92370 5.02461 5.13485 5.25517 5.28192 5.32203 5.36845 5.43554 5.53205 5.54704 5.57693 5.78031 5.87314 5.96414 5.98577 6.05343 6.19389 6.40077 6.42870 6.43373 6.66978 6.75962 6.80691 6.87232 7.07948 7.41231 7.48098 7.67076 7.70288 8.04384 8.32281 8.37534 9.07789 9.70649 10.26714 11.17997 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031781 B = 0.002272 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.821193 B =12323.228101 C =12599.623259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.372 5.372 3 N -0.302 5.302 4 C 0.045 3.955 5 C -0.273 4.273 6 C 0.090 3.910 7 C -0.042 4.042 8 C -0.134 4.134 9 C 0.511 3.489 10 O -0.545 6.545 11 N -0.715 5.715 12 C 0.162 3.838 13 H 0.087 0.913 14 C -0.139 4.139 15 C 0.144 3.856 16 N -0.589 5.589 17 C -0.257 4.257 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.904 3.096 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.148 3.852 26 C 0.072 3.928 27 H 0.051 0.949 28 O -0.574 6.574 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.182 0.818 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.397 0.603 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.024 0.976 43 H 0.256 0.744 44 H 0.094 0.906 45 H 0.029 0.971 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 19.350 -5.311 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.155 5.155 3 N -0.124 5.124 4 C -0.140 4.140 5 C -0.303 4.303 6 C -0.038 4.038 7 C -0.082 4.082 8 C -0.175 4.175 9 C 0.297 3.703 10 O -0.423 6.423 11 N -0.364 5.364 12 C 0.058 3.942 13 H 0.105 0.895 14 C -0.179 4.179 15 C 0.018 3.982 16 N -0.313 5.313 17 C -0.386 4.386 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.734 3.266 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.021 3.979 26 C 0.011 3.989 27 H 0.069 0.931 28 O -0.378 6.378 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.199 0.801 33 H 0.165 0.835 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.231 0.769 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.047 0.953 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 4.384 20.114 -6.565 21.608 hybrid contribution 0.672 -1.258 1.780 2.281 sum 5.056 18.856 -4.785 20.100 Atomic orbital electron populations 1.21890 0.74389 1.04613 1.03573 1.48531 1.06558 1.03426 1.56942 1.77356 1.01920 1.08012 1.25086 1.23829 0.95195 0.95134 0.99848 1.21282 0.96349 0.95025 1.17595 1.21141 0.91338 0.90386 1.00914 1.19985 1.03748 0.87713 0.96720 1.21610 1.03938 0.93781 0.98149 1.20457 0.77691 0.88090 0.84042 1.90711 1.50081 1.70125 1.31360 1.46123 1.67681 1.13968 1.08629 1.20992 0.96175 0.79170 0.97887 0.89454 1.22409 0.96982 0.97402 1.01112 1.20942 0.95755 0.92092 0.89447 1.44003 1.36504 1.29582 1.21212 1.19163 0.93496 1.07178 1.18758 0.91383 1.25080 0.95134 0.98274 1.01137 1.70022 0.99228 1.46260 1.39110 0.86340 0.77416 0.80462 0.82389 1.20990 1.21579 1.20732 1.21418 0.89787 0.84283 1.02419 1.22983 0.87956 0.93089 0.94881 0.93059 1.86401 1.48452 1.59402 1.43585 0.90625 0.89288 0.89211 0.80085 0.83470 0.89823 0.88168 0.88354 0.89178 0.76940 0.91789 0.92026 0.92108 0.95834 0.93410 0.88808 0.95260 0.77727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 11.06 59.85 0.66 1.34 16 2 N -0.37 -3.84 4.01 -63.88 -0.26 -4.09 16 3 N -0.30 -3.52 12.58 30.62 0.39 -3.14 16 4 C 0.05 0.44 12.03 -17.37 -0.21 0.23 16 5 C -0.27 -2.60 10.72 -40.01 -0.43 -3.03 16 6 C 0.09 0.89 6.18 -82.27 -0.51 0.38 16 7 C -0.04 -0.40 4.61 -27.89 -0.13 -0.53 16 8 C -0.13 -1.24 5.68 -27.89 -0.16 -1.39 16 9 C 0.51 6.87 7.79 -10.99 -0.09 6.79 16 10 O -0.54 -9.39 15.64 5.55 0.09 -9.30 16 11 N -0.71 -9.79 4.92 -53.77 -0.26 -10.06 16 12 C 0.16 2.78 2.12 -67.89 -0.14 2.64 16 13 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 14 C -0.14 -2.40 5.65 -26.61 -0.15 -2.55 16 15 C 0.14 2.97 6.52 -3.71 -0.02 2.95 16 16 N -0.59 -14.12 2.99 -172.32 -0.52 -14.64 16 17 C -0.26 -6.74 9.58 -15.06 -0.14 -6.88 16 18 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 19 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 20 N -0.90 -25.17 11.19 55.49 0.62 -24.55 16 21 Si 0.90 20.82 29.59 -169.99 -5.03 15.79 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.15 3.34 4.94 -3.71 -0.02 3.32 16 26 C 0.07 1.29 3.14 -26.61 -0.08 1.20 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 O -0.57 -9.34 13.16 -35.23 -0.46 -9.80 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.52 7.55 -51.93 -0.39 0.13 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.08 0.81 7.45 -51.93 -0.39 0.42 16 35 H 0.10 0.98 8.10 -51.92 -0.42 0.56 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.40 4.52 8.60 -40.82 -0.35 4.17 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.09 2.31 6.03 -51.93 -0.31 2.00 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.38 4.89 9.08 45.56 0.41 5.30 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -33.31 378.25 -7.70 -41.01 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.45 Total: 8.64 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.51 Total: 4.44 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.03 Total: -56.48 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.38 Total: -19.11 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.31 -7.70 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099860443.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.612 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds