Wall clock time and date at job start Fri Apr 10 2020 18:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40085 * 126.04111 * 2 1 4 4 C 1.30835 * 108.20742 * 179.97438 * 3 2 1 5 5 C 1.39871 * 108.19890 * 0.24476 * 4 3 2 6 6 C 1.34944 * 126.03257 * 179.97438 * 2 1 3 7 7 C 1.50696 * 126.13065 * 0.02562 * 6 2 1 8 8 C 1.53000 * 109.47251 * 264.99519 * 7 6 2 9 9 C 1.50695 * 109.47619 * 179.97438 * 8 7 6 10 10 O 1.21285 * 119.99988 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00090 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99690 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46180 * 324.97225 * 12 11 9 14 14 C 1.53038 * 109.46279 * 84.93295 * 12 11 9 15 15 C 1.53192 * 109.31643 * 181.38306 * 14 12 11 16 16 N 1.46929 * 108.77221 * 305.36564 * 15 14 12 17 17 C 1.36932 * 120.62747 * 233.62399 * 16 15 14 18 18 H 1.08000 * 120.00261 * 27.67251 * 17 16 15 19 19 C 1.38810 * 120.00182 * 207.66909 * 17 16 15 20 20 N 1.31619 * 119.99733 * 17.35997 * 19 17 16 21 21 Si 1.86803 * 120.00212 * 197.36645 * 19 17 16 22 22 H 1.48497 * 109.47163 * 59.99601 * 21 19 17 23 23 H 1.48499 * 109.47339 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46896 * 299.99856 * 21 19 17 25 25 C 1.46924 * 118.73863 * 53.61013 * 16 15 14 26 26 C 1.53040 * 109.45766 * 205.00109 * 12 11 9 27 27 H 1.09003 * 109.49494 * 298.56426 * 26 12 11 28 28 O 1.42900 * 109.50036 * 58.66378 * 26 12 11 29 29 H 1.09006 * 109.46722 * 90.02732 * 1 2 3 30 30 H 1.08997 * 109.47479 * 210.02606 * 1 2 3 31 31 H 1.09001 * 109.47117 * 330.03230 * 1 2 3 32 32 H 1.07993 * 125.89737 * 179.97438 * 4 3 2 33 33 H 1.07999 * 126.03642 * 179.71610 * 5 4 3 34 34 H 1.09000 * 109.47214 * 24.99613 * 7 6 2 35 35 H 1.09007 * 109.47249 * 144.99622 * 7 6 2 36 36 H 1.09000 * 109.47088 * 300.00171 * 8 7 6 37 37 H 1.08999 * 109.47139 * 59.99286 * 8 7 6 38 38 H 0.96998 * 120.00228 * 359.97438 * 11 9 8 39 39 H 1.09001 * 109.49452 * 301.33569 * 14 12 11 40 40 H 1.09007 * 109.49854 * 61.43089 * 14 12 11 41 41 H 1.08995 * 109.58531 * 185.57660 * 15 14 12 42 42 H 1.09002 * 109.69678 * 65.22219 * 15 14 12 43 43 H 0.97006 * 119.99682 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.58179 * 186.60112 * 25 16 15 45 45 H 1.08997 * 109.58883 * 66.17497 * 25 16 15 46 46 H 0.96698 * 113.99996 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 0.0006 5 6 3.5436 -0.6666 -0.0047 6 6 2.2588 -1.0913 0.0005 7 6 1.7972 -2.5258 0.0006 8 6 1.7603 -3.0496 1.4377 9 6 1.2981 -4.4839 1.4379 10 8 1.0246 -5.0331 0.3917 11 7 1.1876 -5.1561 2.6008 12 6 0.7388 -6.5507 2.6009 13 1 -0.0010 -6.6942 1.8134 14 6 1.9352 -7.4714 2.3499 15 6 1.4567 -8.9263 2.3163 16 7 0.7253 -9.2123 3.5580 17 6 1.0742 -10.2783 4.3435 18 1 2.0918 -10.6402 4.3417 19 6 0.1201 -10.8937 5.1422 20 7 -1.1601 -10.6984 4.9071 21 14 0.6531 -11.9989 6.5507 22 1 1.4739 -11.2171 7.5100 23 1 -0.5474 -12.5298 7.2450 24 1 1.4568 -13.1280 6.0171 25 6 -0.3875 -8.3326 3.9411 26 6 0.1117 -6.8844 3.9565 27 1 0.8582 -6.7652 4.7418 28 8 -0.9864 -6.0040 4.2037 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5133 32 1 4.4054 1.3709 0.0003 33 1 4.4210 -1.2964 -0.0100 34 1 0.7995 -2.5865 -0.4340 35 1 2.4875 -3.1297 -0.5886 36 1 2.7580 -2.9889 1.8722 37 1 1.0701 -2.4457 2.0268 38 1 1.4059 -4.7168 3.4376 39 1 2.3955 -7.2176 1.3950 40 1 2.6645 -7.3467 3.1504 41 1 2.3162 -9.5919 2.2369 42 1 0.7978 -9.0767 1.4611 43 1 -1.8268 -11.1282 5.4654 44 1 -0.7447 -8.6066 4.9338 45 1 -1.1974 -8.4322 3.2185 46 1 -1.4324 -6.1590 5.0476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099860443.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:14 Heat of formation + Delta-G solvation = -18.347805 kcal Electronic energy + Delta-G solvation = -27228.675602 eV Core-core repulsion = 23347.371050 eV Total energy + Delta-G solvation = -3881.304552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -42.18501 -41.04851 -39.42833 -36.88292 -35.83814 -35.06867 -33.99461 -33.78476 -31.44247 -30.58573 -30.02703 -27.58869 -27.17648 -25.51037 -24.00829 -23.33972 -22.05904 -21.41375 -20.99758 -20.53220 -18.96396 -18.18792 -18.08467 -17.44346 -17.21041 -16.68993 -16.58206 -16.28077 -15.64507 -15.51806 -15.30845 -15.07689 -14.85943 -14.74759 -14.45711 -14.08865 -13.81066 -13.71253 -13.52098 -13.36053 -13.26806 -13.19224 -13.01368 -12.98273 -12.61467 -12.55527 -12.15939 -12.07486 -12.03073 -11.87289 -11.55004 -11.38495 -11.01134 -10.80726 -10.59281 -10.21175 -9.99987 -9.45025 -8.76538 -7.90918 -5.37880 0.88958 1.49632 1.50611 1.58016 1.65031 1.69892 1.90397 2.24432 2.49781 3.12129 3.26639 3.53200 3.64384 3.73107 3.89215 3.93617 4.01163 4.07954 4.21577 4.32201 4.35253 4.38528 4.43220 4.46721 4.58514 4.64106 4.65833 4.74600 4.84896 4.90752 4.92218 4.96926 5.05652 5.07248 5.16570 5.29908 5.34398 5.52911 5.56890 5.63650 5.77697 6.10509 6.33090 6.62594 6.77679 6.82006 7.10012 7.32242 7.77799 8.30456 9.15556 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031781 B = 0.002272 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.821193 B =12323.228101 C =12599.623259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.380 5.380 3 N -0.337 5.337 4 C 0.041 3.959 5 C -0.280 4.280 6 C 0.084 3.916 7 C -0.035 4.035 8 C -0.119 4.119 9 C 0.511 3.489 10 O -0.585 6.585 11 N -0.706 5.706 12 C 0.170 3.830 13 H 0.055 0.945 14 C -0.122 4.122 15 C 0.140 3.860 16 N -0.605 5.605 17 C -0.266 4.266 18 H 0.073 0.927 19 C -0.049 4.049 20 N -0.935 5.935 21 Si 0.970 3.030 22 H -0.274 1.274 23 H -0.296 1.296 24 H -0.277 1.277 25 C 0.156 3.844 26 C 0.092 3.908 27 H 0.066 0.934 28 O -0.573 6.573 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.208 0.792 33 H 0.164 0.836 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.413 0.587 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.008 0.992 43 H 0.252 0.748 44 H 0.070 0.930 45 H -0.006 1.006 46 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.267 20.830 -4.404 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.163 5.163 3 N -0.159 5.159 4 C -0.143 4.143 5 C -0.309 4.309 6 C -0.044 4.044 7 C -0.074 4.074 8 C -0.159 4.159 9 C 0.299 3.701 10 O -0.466 6.466 11 N -0.356 5.356 12 C 0.064 3.936 13 H 0.073 0.927 14 C -0.162 4.162 15 C 0.014 3.986 16 N -0.330 5.330 17 C -0.396 4.396 18 H 0.090 0.910 19 C -0.244 4.244 20 N -0.581 5.581 21 Si 0.798 3.202 22 H -0.199 1.199 23 H -0.222 1.222 24 H -0.203 1.203 25 C 0.029 3.971 26 C 0.031 3.969 27 H 0.084 0.916 28 O -0.380 6.380 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.224 0.776 33 H 0.182 0.818 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.140 0.860 37 H 0.126 0.874 38 H 0.249 0.751 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.026 0.974 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.012 0.988 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.152 21.639 -5.641 23.193 hybrid contribution 0.089 -1.720 1.415 2.229 sum 6.242 19.918 -4.226 21.297 Atomic orbital electron populations 1.22108 0.73147 1.05541 1.04362 1.48787 1.07468 1.03198 1.56848 1.77313 1.02953 1.09150 1.26497 1.24337 0.95457 0.95765 0.98784 1.21591 0.96838 0.95267 1.17248 1.21233 0.91666 0.90349 1.01114 1.19884 1.03314 0.87462 0.96786 1.21557 1.05457 0.90481 0.98450 1.21162 0.76483 0.89415 0.83009 1.90705 1.51741 1.71333 1.32796 1.45916 1.67469 1.12467 1.09784 1.20611 0.95389 0.81390 0.96181 0.92708 1.22194 0.97062 0.94876 1.02079 1.21053 0.95263 0.94626 0.87633 1.44258 1.36812 1.29649 1.22247 1.19514 0.93711 1.07552 1.18788 0.90966 1.25837 0.95115 1.00024 1.03449 1.70185 1.00188 1.47639 1.40069 0.85310 0.76706 0.78764 0.79461 1.19945 1.22220 1.20303 1.21234 0.88858 0.87250 0.99793 1.22547 0.88430 0.90106 0.95792 0.91647 1.86380 1.48196 1.58421 1.44981 0.89956 0.88114 0.88549 0.77568 0.81827 0.90420 0.88620 0.85983 0.87377 0.75096 0.90863 0.90684 0.91574 0.97422 0.93927 0.91175 0.98826 0.75922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 11.06 127.77 1.41 2.55 16 2 N -0.38 -7.26 4.01 -356.03 -1.43 -8.69 16 3 N -0.34 -7.41 12.58 -57.03 -0.72 -8.12 16 4 C 0.04 0.72 12.03 85.24 1.03 1.75 16 5 C -0.28 -4.71 10.72 21.99 0.24 -4.47 16 6 C 0.08 1.50 6.18 41.40 0.26 1.76 16 7 C -0.03 -0.59 4.61 29.85 0.14 -0.45 16 8 C -0.12 -1.83 5.68 29.85 0.17 -1.67 16 9 C 0.51 12.67 7.79 87.66 0.68 13.35 16 10 O -0.59 -19.67 15.64 -3.04 -0.05 -19.72 16 11 N -0.71 -17.67 4.92 -442.41 -2.18 -19.84 16 12 C 0.17 5.67 2.12 45.02 0.10 5.77 16 13 H 0.05 2.22 7.58 -2.39 -0.02 2.21 16 14 C -0.12 -4.07 5.65 30.67 0.17 -3.90 16 15 C 0.14 5.79 6.52 86.36 0.56 6.35 16 16 N -0.60 -29.32 2.99 -699.10 -2.09 -31.42 16 17 C -0.27 -13.98 9.58 84.03 0.81 -13.18 16 18 H 0.07 3.67 7.89 -2.91 -0.02 3.64 16 19 C -0.05 -2.61 4.91 84.86 0.42 -2.19 16 20 N -0.94 -53.43 11.19 21.65 0.24 -53.19 16 21 Si 0.97 42.84 29.59 68.60 2.03 44.87 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 23 H -0.30 -13.24 7.11 99.48 0.71 -12.54 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 25 C 0.16 7.17 4.94 86.36 0.43 7.60 16 26 C 0.09 3.22 3.14 30.67 0.10 3.32 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 O -0.57 -17.88 13.16 -148.98 -1.96 -19.84 16 29 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.10 1.00 7.55 -2.39 -0.02 0.99 16 31 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.21 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.08 1.40 7.45 -2.39 -0.02 1.39 16 35 H 0.10 1.72 8.10 -2.38 -0.02 1.70 16 36 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.41 7.95 8.60 -92.71 -0.80 7.15 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.07 2.33 8.14 -2.38 -0.02 2.32 16 41 H 0.07 2.61 7.93 -2.39 -0.02 2.59 16 42 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.25 13.96 8.31 -92.70 -0.77 13.19 16 44 H 0.07 3.55 6.03 -2.39 -0.01 3.54 16 45 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.39 9.63 9.08 -74.06 -0.67 8.96 16 Total: -1.00 -72.97 378.25 -0.13 -73.09 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -0.47 Total: 26.27 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 6.50 Total: 16.59 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -6.17 Total: -121.26 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -2.01 Total: -39.56 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -72.97 -0.13 -73.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099860443.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.746 kcal (2) G-P(sol) polarization free energy of solvation -72.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds