Wall clock time and date at job start Fri Apr 10 2020 18:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36886 * 126.39610 * 2 1 4 4 C 1.34669 * 106.81509 * 180.02562 * 3 2 1 5 5 N 1.34128 * 108.02373 * 359.77290 * 4 3 2 6 6 C 1.30505 * 109.25591 * 0.37597 * 5 4 3 7 7 C 1.50697 * 125.65134 * 179.89222 * 6 5 4 8 8 C 1.52998 * 109.47021 * 269.68948 * 7 6 5 9 9 C 1.50700 * 109.47468 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99315 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00195 * 179.97438 * 9 8 7 12 12 C 1.46492 * 119.99821 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46101 * 324.97434 * 12 11 9 14 14 C 1.53046 * 109.46270 * 84.93416 * 12 11 9 15 15 C 1.53194 * 109.31472 * 181.38469 * 14 12 11 16 16 N 1.46928 * 108.77583 * 305.36505 * 15 14 12 17 17 C 1.36934 * 120.63125 * 233.63215 * 16 15 14 18 18 H 1.08000 * 120.00074 * 27.66303 * 17 16 15 19 19 C 1.38811 * 120.00155 * 207.66979 * 17 16 15 20 20 N 1.31622 * 120.00031 * 17.35466 * 19 17 16 21 21 Si 1.86802 * 120.00104 * 197.36075 * 19 17 16 22 22 H 1.48502 * 109.47072 * 59.99335 * 21 19 17 23 23 H 1.48496 * 109.47124 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46733 * 299.99672 * 21 19 17 25 25 C 1.46925 * 118.73678 * 53.60781 * 16 15 14 26 26 C 1.53041 * 109.46287 * 205.00408 * 12 11 9 27 27 H 1.09006 * 109.49406 * 298.56651 * 26 12 11 28 28 O 1.42900 * 109.49780 * 58.66043 * 26 12 11 29 29 H 1.08996 * 109.47250 * 269.97733 * 1 2 3 30 30 H 1.09002 * 109.47012 * 29.98183 * 1 2 3 31 31 H 1.09003 * 109.46617 * 149.97485 * 1 2 3 32 32 H 1.07994 * 126.58899 * 0.05124 * 3 2 1 33 33 H 1.08003 * 125.98588 * 179.97438 * 4 3 2 34 34 H 1.08995 * 109.47121 * 149.69271 * 7 6 5 35 35 H 1.08996 * 109.46864 * 29.68631 * 7 6 5 36 36 H 1.09004 * 109.47293 * 300.00179 * 8 7 6 37 37 H 1.09004 * 109.47144 * 59.99617 * 8 7 6 38 38 H 0.96998 * 119.99994 * 0.02562 * 11 9 8 39 39 H 1.08998 * 109.49228 * 301.33428 * 14 12 11 40 40 H 1.08999 * 109.49597 * 61.43409 * 14 12 11 41 41 H 1.08998 * 109.58519 * 185.57704 * 15 14 12 42 42 H 1.09003 * 109.69980 * 65.22136 * 15 14 12 43 43 H 0.96997 * 119.99912 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.58759 * 186.60118 * 25 16 15 45 45 H 1.09007 * 109.58548 * 66.18034 * 25 16 15 46 46 H 0.96696 * 113.99868 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 -0.0006 5 7 3.5096 -0.6903 0.0041 6 6 2.2664 -1.0870 -0.0005 7 6 1.8019 -2.5206 0.0002 8 6 1.6435 -3.0060 -1.4421 9 6 1.1796 -4.4399 -1.4415 10 8 0.9935 -5.0165 -0.3909 11 7 0.9705 -5.0810 -2.6085 12 6 0.5191 -6.4746 -2.6078 13 1 0.9693 -7.0018 -1.7667 14 6 -1.0054 -6.5167 -2.4786 15 6 -1.4708 -7.9758 -2.4435 16 7 -0.9463 -8.6682 -3.6286 17 6 -1.7869 -9.3505 -4.4669 18 1 -2.8204 -9.0502 -4.5571 19 6 -1.3108 -10.4282 -5.2009 20 7 -0.1815 -11.0108 -4.8575 21 14 -2.2726 -11.0517 -6.6759 22 1 -2.4016 -9.9638 -7.6784 23 1 -1.5564 -12.2019 -7.2836 24 1 -3.6241 -11.4846 -6.2384 25 6 0.4972 -8.6139 -3.8972 26 6 0.9406 -7.1478 -3.9160 27 1 0.4706 -6.6363 -4.7562 28 8 2.3616 -7.0808 -4.0506 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5143 32 1 1.9613 2.1345 0.0008 33 1 4.4369 1.2612 -0.0011 34 1 0.8437 -2.5919 0.5148 35 1 2.5370 -3.1404 0.5134 36 1 0.9084 -2.3862 -1.9554 37 1 2.6017 -2.9347 -1.9568 38 1 1.1190 -4.6196 -3.4487 39 1 -1.3063 -6.0166 -1.5580 40 1 -1.4569 -6.0113 -3.3322 41 1 -2.5601 -8.0122 -2.4513 42 1 -1.0954 -8.4596 -1.5417 43 1 0.1514 -11.7636 -5.3706 44 1 0.7063 -9.0714 -4.8642 45 1 1.0349 -9.1483 -3.1140 46 1 2.6997 -7.4889 -4.8594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099927416.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:33 Heat of formation + Delta-G solvation = -32.939946 kcal Electronic energy + Delta-G solvation = -27271.788138 eV Core-core repulsion = 23389.850824 eV Total energy + Delta-G solvation = -3881.937315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.01447 -41.08332 -39.44068 -36.88687 -35.83550 -34.99896 -34.61943 -33.89952 -31.38069 -30.55681 -29.77835 -27.87538 -27.13820 -25.53735 -24.01726 -23.34838 -22.28404 -21.43242 -21.01253 -20.58202 -18.96665 -18.23979 -18.09776 -17.62560 -17.34054 -16.75311 -16.62382 -16.47375 -15.65055 -15.51138 -15.42239 -15.09009 -14.93842 -14.56472 -14.42672 -14.10642 -13.89586 -13.81750 -13.68630 -13.44909 -13.38274 -13.31344 -13.02009 -12.96346 -12.61258 -12.55607 -12.17482 -12.08147 -12.03159 -11.87281 -11.38988 -11.01772 -10.92752 -10.80734 -10.59228 -10.53382 -10.01144 -9.30381 -8.76623 -7.90597 -5.37828 1.08910 1.49550 1.50690 1.58173 1.67265 1.91362 2.09654 2.30454 2.49893 3.12220 3.26594 3.43684 3.64117 3.77445 3.89873 3.92985 4.03528 4.07752 4.17284 4.19556 4.32124 4.43090 4.43166 4.46346 4.49332 4.63223 4.70677 4.72427 4.73843 4.90706 4.95859 4.96703 5.04092 5.05834 5.16353 5.34232 5.37368 5.51758 5.56699 5.63613 5.87175 6.26360 6.33128 6.60608 6.82280 7.09876 7.18348 7.30088 7.77799 8.30740 9.15959 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030648 B = 0.002302 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.369552 B =12162.950137 C =12484.464461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.456 5.456 3 C -0.046 4.046 4 C -0.061 4.061 5 N -0.531 5.531 6 C 0.192 3.808 7 C -0.011 4.011 8 C -0.117 4.117 9 C 0.513 3.487 10 O -0.584 6.584 11 N -0.705 5.705 12 C 0.169 3.831 13 H 0.053 0.947 14 C -0.120 4.120 15 C 0.140 3.860 16 N -0.605 5.605 17 C -0.266 4.266 18 H 0.074 0.926 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.273 1.273 23 H -0.297 1.297 24 H -0.277 1.277 25 C 0.156 3.844 26 C 0.092 3.908 27 H 0.067 0.933 28 O -0.574 6.574 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.210 0.790 33 H 0.182 0.818 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.413 0.587 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.007 0.993 43 H 0.252 0.748 44 H 0.070 0.930 45 H -0.007 1.007 46 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 25.895 4.224 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.138 5.138 3 C -0.179 4.179 4 C -0.209 4.209 5 N -0.251 5.251 6 C -0.071 4.071 7 C -0.051 4.051 8 C -0.158 4.158 9 C 0.301 3.699 10 O -0.464 6.464 11 N -0.355 5.355 12 C 0.063 3.937 13 H 0.071 0.929 14 C -0.160 4.160 15 C 0.014 3.986 16 N -0.329 5.329 17 C -0.395 4.395 18 H 0.091 0.909 19 C -0.245 4.245 20 N -0.581 5.581 21 Si 0.798 3.202 22 H -0.199 1.199 23 H -0.223 1.223 24 H -0.202 1.202 25 C 0.029 3.971 26 C 0.031 3.969 27 H 0.085 0.915 28 O -0.381 6.381 29 H 0.106 0.894 30 H 0.130 0.870 31 H 0.113 0.887 32 H 0.227 0.773 33 H 0.199 0.801 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.138 0.862 37 H 0.122 0.878 38 H 0.249 0.751 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.025 0.975 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.011 0.989 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 0.854 25.156 5.473 25.759 hybrid contribution -0.579 -0.637 -1.383 1.629 sum 0.274 24.519 4.089 24.859 Atomic orbital electron populations 1.22406 0.74315 1.06412 1.04992 1.45561 1.09002 1.05986 1.53277 1.23264 0.90664 0.93818 1.10200 1.22732 0.98223 0.90660 1.09249 1.70198 1.20082 1.13735 1.21095 1.23182 0.85906 0.91372 1.06599 1.19566 1.02753 0.86042 0.96709 1.21519 1.04688 0.91145 0.98431 1.21074 0.76137 0.89558 0.83145 1.90702 1.53582 1.69560 1.32597 1.45896 1.67765 1.12672 1.09212 1.20640 0.94549 0.81844 0.96650 0.92874 1.22186 0.93686 0.97805 1.02364 1.21061 0.98062 0.91055 0.88415 1.44259 1.03314 1.59791 1.25583 1.19521 0.94386 1.07706 1.17928 0.90850 1.25857 0.99031 0.96227 1.03398 1.70189 1.24174 1.23302 1.40480 0.85298 0.77977 0.77262 0.79631 1.19910 1.22285 1.20238 1.21228 0.83912 0.92040 0.99938 1.22566 0.81054 0.96899 0.96420 0.91517 1.86400 1.20919 1.82418 1.48368 0.89440 0.86988 0.88680 0.77293 0.80098 0.88860 0.90284 0.86166 0.87803 0.75113 0.90737 0.90529 0.91412 0.97502 0.93940 0.91150 0.98923 0.75928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 10.79 127.77 1.38 1.76 16 2 N -0.46 -6.74 3.15 -537.60 -1.69 -8.44 16 3 C -0.05 -0.63 11.58 83.09 0.96 0.33 16 4 C -0.06 -1.19 11.87 83.52 0.99 -0.20 16 5 N -0.53 -13.68 11.25 -188.13 -2.12 -15.80 16 6 C 0.19 4.06 7.16 138.12 0.99 5.05 16 7 C -0.01 -0.23 4.60 29.85 0.14 -0.09 16 8 C -0.12 -2.17 5.68 29.85 0.17 -2.00 16 9 C 0.51 13.81 7.79 87.66 0.68 14.49 16 10 O -0.58 -20.77 15.65 -3.05 -0.05 -20.82 16 11 N -0.71 -18.74 4.92 -442.40 -2.18 -20.91 16 12 C 0.17 5.82 2.12 45.02 0.10 5.92 16 13 H 0.05 2.24 7.58 -2.39 -0.02 2.22 16 14 C -0.12 -4.03 5.65 30.67 0.17 -3.86 16 15 C 0.14 5.81 6.52 86.36 0.56 6.37 16 16 N -0.60 -29.55 2.99 -699.09 -2.09 -31.65 16 17 C -0.27 -14.02 9.58 84.03 0.81 -13.22 16 18 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 19 C -0.05 -2.67 4.91 84.86 0.42 -2.26 16 20 N -0.94 -53.99 11.19 21.65 0.24 -53.75 16 21 Si 0.97 43.04 29.59 68.60 2.03 45.07 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 25 C 0.16 7.32 4.94 86.36 0.43 7.74 16 26 C 0.09 3.30 3.14 30.67 0.10 3.40 16 27 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 28 O -0.57 -18.97 13.16 -148.98 -1.96 -20.93 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.09 0.53 7.66 -2.39 -0.02 0.51 16 32 H 0.21 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.09 1.74 7.66 -2.39 -0.02 1.72 16 35 H 0.08 2.02 8.10 -2.39 -0.02 2.00 16 36 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.41 8.56 8.60 -92.71 -0.80 7.76 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 42 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 44 H 0.07 3.62 6.04 -2.39 -0.01 3.61 16 45 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 46 H 0.39 10.27 9.08 -74.06 -0.67 9.59 16 Total: -1.00 -76.56 377.78 -0.40 -76.96 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.47 Total: 26.82 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 7.89 Total: 23.44 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -7.84 Total: -130.55 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -2.01 Total: -41.75 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -76.56 -0.40 -76.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099927416.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.019 kcal (2) G-P(sol) polarization free energy of solvation -76.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds