Wall clock time and date at job start Fri Apr 10 2020 18:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36883 * 126.39945 * 2 1 4 4 C 1.34673 * 106.81960 * 180.25169 * 3 2 1 5 5 N 1.34122 * 108.02019 * 359.73834 * 4 3 2 6 6 C 1.30504 * 109.25577 * 0.02562 * 5 4 3 7 7 C 1.50701 * 125.65070 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47030 * 90.02378 * 7 6 5 9 9 C 1.50694 * 109.47260 * 179.97438 * 8 7 6 10 10 O 1.21285 * 120.00376 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00475 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00439 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.45945 * 34.96824 * 12 11 9 14 14 C 1.53036 * 109.46071 * 274.99733 * 12 11 9 15 15 C 1.53188 * 109.31839 * 178.61424 * 14 12 11 16 16 N 1.46932 * 108.77457 * 54.63359 * 15 14 12 17 17 C 1.36934 * 120.62903 * 126.36990 * 16 15 14 18 18 H 1.08001 * 120.00159 * 207.72029 * 17 16 15 19 19 C 1.38809 * 120.00082 * 27.45188 * 17 16 15 20 20 N 1.31623 * 120.00212 * 17.77957 * 19 17 16 21 21 Si 1.86803 * 120.00174 * 197.78078 * 19 17 16 22 22 H 1.48503 * 109.46943 * 94.32041 * 21 19 17 23 23 H 1.48490 * 109.47331 * 214.31818 * 21 19 17 24 24 H 1.48497 * 109.46810 * 334.32356 * 21 19 17 25 25 C 1.46919 * 118.73734 * 306.64743 * 16 15 14 26 26 C 1.52764 * 109.01061 * 53.30654 * 25 16 15 27 27 H 1.09004 * 109.35397 * 65.50114 * 26 25 16 28 28 O 1.42898 * 109.58950 * 185.53416 * 26 25 16 29 29 H 1.08997 * 109.47438 * 270.18944 * 1 2 3 30 30 H 1.09004 * 109.47269 * 30.19118 * 1 2 3 31 31 H 1.08995 * 109.47394 * 150.18702 * 1 2 3 32 32 H 1.08004 * 126.59381 * 359.97006 * 3 2 1 33 33 H 1.07999 * 125.98593 * 179.72364 * 4 3 2 34 34 H 1.09001 * 109.46913 * 330.02877 * 7 6 5 35 35 H 1.09000 * 109.47100 * 210.02625 * 7 6 5 36 36 H 1.09010 * 109.46900 * 60.00203 * 8 7 6 37 37 H 1.09001 * 109.47554 * 300.00597 * 8 7 6 38 38 H 0.97000 * 119.99517 * 359.97438 * 11 9 8 39 39 H 1.09008 * 109.49969 * 58.65971 * 14 12 11 40 40 H 1.09004 * 109.49986 * 298.56679 * 14 12 11 41 41 H 1.09000 * 109.58388 * 294.85066 * 15 14 12 42 42 H 1.09004 * 109.59250 * 174.42274 * 15 14 12 43 43 H 0.97000 * 120.00092 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58542 * 173.14356 * 25 16 15 45 45 H 1.09002 * 109.58644 * 293.56772 * 25 16 15 46 46 H 0.96698 * 114.00670 * 299.98334 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6505 -0.0057 5 7 3.5096 -0.6903 -0.0032 6 6 2.2663 -1.0870 0.0032 7 6 1.8018 -2.5206 0.0073 8 6 1.6508 -3.0037 1.4511 9 6 1.1857 -4.4370 1.4552 10 8 0.9942 -5.0155 0.4065 11 7 0.9825 -5.0763 2.6242 12 6 0.5309 -6.4699 2.6281 13 1 0.9760 -6.9983 1.7851 14 6 -0.9942 -6.5120 2.5084 15 6 -1.4601 -7.9710 2.4781 16 7 -0.9284 -8.6619 3.6608 17 6 -1.7639 -9.3430 4.5052 18 1 -1.5019 -9.4591 5.5465 19 6 -2.9503 -9.8795 4.0241 20 7 -3.1186 -10.0495 2.7298 21 14 -4.3081 -10.3602 5.2136 22 1 -5.2682 -9.2355 5.3495 23 1 -5.0182 -11.5574 4.6965 24 1 -3.7172 -10.6697 6.5403 25 6 0.5159 -8.6029 3.9235 26 6 0.9604 -7.1414 3.9346 27 1 0.4957 -6.6289 4.7770 28 8 2.3822 -7.0739 4.0606 29 1 -0.3634 0.0034 1.0276 30 1 -0.3634 0.8883 -0.5168 31 1 -0.3634 -0.8916 -0.5109 32 1 1.9613 2.1346 -0.0005 33 1 4.4368 1.2612 -0.0114 34 1 2.5342 -3.1413 -0.5088 35 1 0.8409 -2.5926 -0.5023 36 1 0.9184 -2.3829 1.9672 37 1 2.6117 -2.9316 1.9607 38 1 1.1360 -4.6138 3.4629 39 1 -1.3010 -6.0129 1.5891 40 1 -1.4405 -6.0054 3.3642 41 1 -1.0885 -8.4545 1.5746 42 1 -2.5495 -8.0072 2.4927 43 1 -3.9476 -10.4247 2.3937 44 1 0.7300 -9.0559 4.8915 45 1 1.0520 -9.1390 3.1403 46 1 2.7254 -7.4812 4.8676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099927417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:39 Heat of formation + Delta-G solvation = -6.735244 kcal Electronic energy + Delta-G solvation = -27269.242704 eV Core-core repulsion = 23388.441710 eV Total energy + Delta-G solvation = -3880.800994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.31476 -39.80077 -38.02599 -35.42604 -34.41462 -34.26930 -33.73788 -31.95734 -30.18615 -29.16198 -28.46433 -27.30942 -25.58475 -24.31309 -22.40107 -21.80775 -21.60525 -20.20630 -19.85914 -19.41557 -17.53733 -17.18674 -16.74163 -16.47252 -16.05515 -15.77302 -15.61684 -14.86809 -14.63671 -14.25740 -13.97397 -13.82736 -13.59365 -13.40596 -13.33338 -13.15878 -13.04192 -12.88783 -12.55593 -12.28997 -12.15686 -12.03878 -11.59667 -11.29465 -11.12867 -10.91144 -10.69362 -10.35055 -10.27347 -10.16744 -9.97444 -9.86259 -9.82652 -9.72410 -9.43473 -8.75806 -8.59701 -8.47209 -6.80502 -5.87424 -3.31129 1.77666 2.51052 2.82985 2.91116 3.31893 3.39249 3.39523 3.41232 4.23812 4.35453 4.38106 4.50265 4.54347 4.70590 4.77785 4.88064 5.03515 5.07130 5.19646 5.28146 5.30078 5.34673 5.42892 5.46989 5.54210 5.72655 5.77787 5.89105 5.94993 6.04733 6.09851 6.30225 6.46387 6.51036 6.53059 6.63705 6.75404 6.85737 6.91641 7.26187 7.57579 7.70646 7.73480 7.90688 7.91046 8.34893 8.44029 9.10560 9.73124 10.28818 11.21248 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023164 B = 0.002423 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.507529 B =11551.400570 C =12211.005967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.459 5.459 3 C -0.064 4.064 4 C -0.029 4.029 5 N -0.488 5.488 6 C 0.211 3.789 7 C -0.018 4.018 8 C -0.133 4.133 9 C 0.513 3.487 10 O -0.542 6.542 11 N -0.716 5.716 12 C 0.162 3.838 13 H 0.088 0.912 14 C -0.146 4.146 15 C 0.170 3.830 16 N -0.588 5.588 17 C -0.259 4.259 18 H 0.067 0.933 19 C 0.005 3.995 20 N -0.899 5.899 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.120 3.880 26 C 0.080 3.920 27 H 0.055 0.945 28 O -0.570 6.570 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.173 0.827 33 H 0.169 0.831 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.396 0.604 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.024 0.976 42 H 0.093 0.907 43 H 0.256 0.744 44 H 0.060 0.940 45 H 0.029 0.971 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.442 21.005 -1.434 22.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.141 5.141 3 C -0.196 4.196 4 C -0.177 4.177 5 N -0.207 5.207 6 C -0.051 4.051 7 C -0.058 4.058 8 C -0.174 4.174 9 C 0.298 3.702 10 O -0.420 6.420 11 N -0.365 5.365 12 C 0.058 3.942 13 H 0.106 0.894 14 C -0.186 4.186 15 C 0.044 3.956 16 N -0.312 5.312 17 C -0.388 4.388 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.542 5.542 21 Si 0.734 3.266 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.007 4.007 26 C 0.019 3.981 27 H 0.073 0.927 28 O -0.375 6.375 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.190 0.810 33 H 0.186 0.814 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.229 0.771 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.111 0.889 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.047 0.953 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.626 20.290 -2.860 21.864 hybrid contribution -1.374 0.435 1.590 2.145 sum 6.252 20.725 -1.271 21.685 Atomic orbital electron populations 1.22104 0.76579 1.04939 1.03876 1.45341 1.07648 1.06679 1.54477 1.22694 0.91436 0.92507 1.12998 1.22318 0.96410 0.91253 1.07728 1.70283 1.18513 1.11964 1.19935 1.23326 0.85757 0.90897 1.05166 1.19718 1.03208 0.86182 0.96665 1.21589 1.03768 0.93832 0.98222 1.20420 0.77335 0.88342 0.84058 1.90720 1.51691 1.68218 1.31349 1.46091 1.68129 1.14186 1.08115 1.21000 0.95264 0.80145 0.97787 0.89398 1.22594 0.92988 1.02001 1.01017 1.20841 1.00612 0.85651 0.88470 1.44034 1.00025 1.58836 1.28337 1.19175 1.00525 1.28877 0.90247 0.91500 1.25062 1.00224 0.98361 0.95818 1.70045 1.25779 1.46792 1.11609 0.86249 0.82220 0.77715 0.80417 1.21405 1.21681 1.20353 1.21446 0.87426 0.92176 0.99678 1.22676 0.80081 0.98862 0.96467 0.92705 1.86489 1.21676 1.82486 1.46822 0.90298 0.89556 0.89069 0.80979 0.81376 0.87765 0.89548 0.89445 0.88223 0.77071 0.91970 0.92438 0.95778 0.88870 0.93434 0.92179 0.95306 0.77989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 10.97 59.84 0.66 1.02 16 2 N -0.46 -4.10 3.15 -121.28 -0.38 -4.48 16 3 C -0.06 -0.54 11.58 -16.56 -0.19 -0.73 16 4 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 5 N -0.49 -6.41 11.25 -10.81 -0.12 -6.53 16 6 C 0.21 2.39 7.16 -155.41 -1.11 1.28 16 7 C -0.02 -0.20 4.81 -27.88 -0.13 -0.34 16 8 C -0.13 -1.39 5.68 -27.89 -0.16 -1.55 16 9 C 0.51 7.40 7.79 -10.99 -0.09 7.31 16 10 O -0.54 -9.95 15.64 5.55 0.09 -9.86 16 11 N -0.72 -10.21 4.92 -53.77 -0.26 -10.48 16 12 C 0.16 2.85 2.12 -67.89 -0.14 2.71 16 13 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 14 C -0.15 -2.79 5.65 -26.62 -0.15 -2.94 16 15 C 0.17 4.02 5.32 -3.71 -0.02 4.00 16 16 N -0.59 -14.23 3.00 -172.58 -0.52 -14.75 16 17 C -0.26 -6.84 9.59 -15.06 -0.14 -6.99 16 18 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 19 C 0.00 0.12 4.90 -17.43 -0.09 0.04 16 20 N -0.90 -25.60 11.20 55.49 0.62 -24.98 16 21 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C 0.12 2.42 6.11 -3.93 -0.02 2.40 16 26 C 0.08 1.34 3.13 -26.83 -0.08 1.26 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 O -0.57 -8.45 13.16 -35.23 -0.46 -8.92 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.47 7.04 -51.93 -0.37 0.10 16 32 H 0.17 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.10 1.30 8.10 -51.93 -0.42 0.88 16 35 H 0.09 0.89 7.02 -51.93 -0.36 0.52 16 36 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.40 4.63 8.60 -40.82 -0.35 4.28 16 39 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 2.44 6.03 -51.93 -0.31 2.12 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.37 3.97 9.08 45.56 0.41 4.38 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -34.58 376.89 -8.69 -43.27 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.41 Total: 8.07 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -1.89 Total: 6.96 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.67 Total: -61.23 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.38 Total: -18.78 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.58 -8.69 -43.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099927417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.533 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds