Wall clock time and date at job start Fri Apr 10 2020 18:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36883 * 126.39945 * 2 1 4 4 C 1.34673 * 106.81960 * 180.25169 * 3 2 1 5 5 N 1.34122 * 108.02019 * 359.73834 * 4 3 2 6 6 C 1.30504 * 109.25577 * 0.02562 * 5 4 3 7 7 C 1.50701 * 125.65070 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47030 * 90.02378 * 7 6 5 9 9 C 1.50694 * 109.47260 * 179.97438 * 8 7 6 10 10 O 1.21285 * 120.00376 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00475 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00439 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.45945 * 34.96824 * 12 11 9 14 14 C 1.53036 * 109.46071 * 274.99733 * 12 11 9 15 15 C 1.53188 * 109.31839 * 178.61424 * 14 12 11 16 16 N 1.46932 * 108.77457 * 54.63359 * 15 14 12 17 17 C 1.36934 * 120.62903 * 126.36990 * 16 15 14 18 18 H 1.08001 * 120.00159 * 207.72029 * 17 16 15 19 19 C 1.38809 * 120.00082 * 27.45188 * 17 16 15 20 20 N 1.31623 * 120.00212 * 17.77957 * 19 17 16 21 21 Si 1.86803 * 120.00174 * 197.78078 * 19 17 16 22 22 H 1.48503 * 109.46943 * 94.32041 * 21 19 17 23 23 H 1.48490 * 109.47331 * 214.31818 * 21 19 17 24 24 H 1.48497 * 109.46810 * 334.32356 * 21 19 17 25 25 C 1.46919 * 118.73734 * 306.64743 * 16 15 14 26 26 C 1.52764 * 109.01061 * 53.30654 * 25 16 15 27 27 H 1.09004 * 109.35397 * 65.50114 * 26 25 16 28 28 O 1.42898 * 109.58950 * 185.53416 * 26 25 16 29 29 H 1.08997 * 109.47438 * 270.18944 * 1 2 3 30 30 H 1.09004 * 109.47269 * 30.19118 * 1 2 3 31 31 H 1.08995 * 109.47394 * 150.18702 * 1 2 3 32 32 H 1.08004 * 126.59381 * 359.97006 * 3 2 1 33 33 H 1.07999 * 125.98593 * 179.72364 * 4 3 2 34 34 H 1.09001 * 109.46913 * 330.02877 * 7 6 5 35 35 H 1.09000 * 109.47100 * 210.02625 * 7 6 5 36 36 H 1.09010 * 109.46900 * 60.00203 * 8 7 6 37 37 H 1.09001 * 109.47554 * 300.00597 * 8 7 6 38 38 H 0.97000 * 119.99517 * 359.97438 * 11 9 8 39 39 H 1.09008 * 109.49969 * 58.65971 * 14 12 11 40 40 H 1.09004 * 109.49986 * 298.56679 * 14 12 11 41 41 H 1.09000 * 109.58388 * 294.85066 * 15 14 12 42 42 H 1.09004 * 109.59250 * 174.42274 * 15 14 12 43 43 H 0.97000 * 120.00092 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58542 * 173.14356 * 25 16 15 45 45 H 1.09002 * 109.58644 * 293.56772 * 25 16 15 46 46 H 0.96698 * 114.00670 * 299.98334 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6505 -0.0057 5 7 3.5096 -0.6903 -0.0032 6 6 2.2663 -1.0870 0.0032 7 6 1.8018 -2.5206 0.0073 8 6 1.6508 -3.0037 1.4511 9 6 1.1857 -4.4370 1.4552 10 8 0.9942 -5.0155 0.4065 11 7 0.9825 -5.0763 2.6242 12 6 0.5309 -6.4699 2.6281 13 1 0.9760 -6.9983 1.7851 14 6 -0.9942 -6.5120 2.5084 15 6 -1.4601 -7.9710 2.4781 16 7 -0.9284 -8.6619 3.6608 17 6 -1.7639 -9.3430 4.5052 18 1 -1.5019 -9.4591 5.5465 19 6 -2.9503 -9.8795 4.0241 20 7 -3.1186 -10.0495 2.7298 21 14 -4.3081 -10.3602 5.2136 22 1 -5.2682 -9.2355 5.3495 23 1 -5.0182 -11.5574 4.6965 24 1 -3.7172 -10.6697 6.5403 25 6 0.5159 -8.6029 3.9235 26 6 0.9604 -7.1414 3.9346 27 1 0.4957 -6.6289 4.7770 28 8 2.3822 -7.0739 4.0606 29 1 -0.3634 0.0034 1.0276 30 1 -0.3634 0.8883 -0.5168 31 1 -0.3634 -0.8916 -0.5109 32 1 1.9613 2.1346 -0.0005 33 1 4.4368 1.2612 -0.0114 34 1 2.5342 -3.1413 -0.5088 35 1 0.8409 -2.5926 -0.5023 36 1 0.9184 -2.3829 1.9672 37 1 2.6117 -2.9316 1.9607 38 1 1.1360 -4.6138 3.4629 39 1 -1.3010 -6.0129 1.5891 40 1 -1.4405 -6.0054 3.3642 41 1 -1.0885 -8.4545 1.5746 42 1 -2.5495 -8.0072 2.4927 43 1 -3.9476 -10.4247 2.3937 44 1 0.7300 -9.0559 4.8915 45 1 1.0520 -9.1390 3.1403 46 1 2.7254 -7.4812 4.8676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099927417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:38 Heat of formation + Delta-G solvation = -32.683447 kcal Electronic energy + Delta-G solvation = -27270.367902 eV Core-core repulsion = 23388.441710 eV Total energy + Delta-G solvation = -3881.926192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.01982 -41.09543 -39.46728 -36.97584 -35.77760 -34.99842 -34.62853 -33.74807 -31.80028 -30.38488 -29.71936 -27.87429 -27.14597 -25.54493 -23.97868 -23.44222 -22.28580 -21.46976 -21.02192 -20.56429 -18.96497 -18.27864 -18.02187 -17.65626 -17.29497 -16.78904 -16.62995 -16.50323 -15.70227 -15.58833 -15.41079 -15.04894 -14.94255 -14.59018 -14.43129 -14.12137 -13.91928 -13.86626 -13.66009 -13.50999 -13.39027 -13.27541 -12.97511 -12.95313 -12.73634 -12.36049 -12.15586 -12.10144 -12.03150 -11.88410 -11.37880 -11.09481 -10.93594 -10.83986 -10.56842 -10.53633 -9.99968 -9.30816 -8.77580 -7.90531 -5.37575 1.08838 1.48725 1.49757 1.59319 1.67366 1.90524 2.09508 2.29879 2.49135 3.13168 3.26130 3.42735 3.63362 3.77199 3.89067 3.90808 3.99833 4.07347 4.16846 4.17751 4.24832 4.39925 4.41640 4.50601 4.54501 4.62238 4.69805 4.70146 4.72528 4.85437 4.94429 4.97829 5.03218 5.04519 5.12251 5.37837 5.38056 5.52417 5.60486 5.66155 5.86891 6.25330 6.33498 6.60510 6.88699 7.09445 7.17761 7.31075 7.77868 8.30368 9.16948 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023164 B = 0.002423 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.507529 B =11551.400570 C =12211.005967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.456 5.456 3 C -0.047 4.047 4 C -0.060 4.060 5 N -0.530 5.530 6 C 0.192 3.808 7 C -0.012 4.012 8 C -0.115 4.115 9 C 0.511 3.489 10 O -0.586 6.586 11 N -0.704 5.704 12 C 0.169 3.831 13 H 0.053 0.947 14 C -0.127 4.127 15 C 0.178 3.822 16 N -0.604 5.604 17 C -0.264 4.264 18 H 0.077 0.923 19 C -0.052 4.052 20 N -0.937 5.937 21 Si 0.971 3.029 22 H -0.284 1.284 23 H -0.299 1.299 24 H -0.264 1.264 25 C 0.116 3.884 26 C 0.102 3.898 27 H 0.074 0.926 28 O -0.571 6.571 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.210 0.790 33 H 0.183 0.817 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.107 0.893 38 H 0.414 0.586 39 H 0.060 0.940 40 H 0.071 0.929 41 H -0.010 1.010 42 H 0.064 0.936 43 H 0.251 0.749 44 H 0.075 0.925 45 H 0.009 0.991 46 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.409 23.735 0.740 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.138 5.138 3 C -0.180 4.180 4 C -0.207 4.207 5 N -0.250 5.250 6 C -0.071 4.071 7 C -0.052 4.052 8 C -0.156 4.156 9 C 0.299 3.701 10 O -0.466 6.466 11 N -0.355 5.355 12 C 0.063 3.937 13 H 0.071 0.929 14 C -0.167 4.167 15 C 0.052 3.948 16 N -0.329 5.329 17 C -0.394 4.394 18 H 0.094 0.906 19 C -0.247 4.247 20 N -0.582 5.582 21 Si 0.799 3.201 22 H -0.211 1.211 23 H -0.226 1.226 24 H -0.188 1.188 25 C -0.010 4.010 26 C 0.041 3.959 27 H 0.092 0.908 28 O -0.378 6.378 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.227 0.773 33 H 0.200 0.800 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.125 0.875 38 H 0.250 0.750 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.008 0.992 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.093 0.907 45 H 0.027 0.973 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 7.627 23.049 -0.627 24.286 hybrid contribution -1.274 -0.405 0.872 1.596 sum 6.354 22.644 0.245 23.519 Atomic orbital electron populations 1.22399 0.74412 1.06125 1.05234 1.45553 1.08967 1.06060 1.53242 1.23269 0.90680 0.93789 1.10288 1.22738 0.98193 0.90655 1.09160 1.70196 1.19942 1.13715 1.21099 1.23156 0.85936 0.91314 1.06653 1.19570 1.02643 0.86164 0.96787 1.21499 1.04726 0.91021 0.98361 1.21116 0.76172 0.89613 0.83179 1.90713 1.53469 1.69483 1.32948 1.45867 1.67711 1.12732 1.09168 1.20614 0.93818 0.82027 0.97199 0.92891 1.22302 0.94335 0.98585 1.01485 1.20574 0.98740 0.88248 0.87259 1.44255 1.01689 1.58941 1.27968 1.19573 1.00836 1.28015 0.90949 0.90558 1.25875 1.02546 0.99065 0.97224 1.70215 1.26043 1.48424 1.13559 0.85197 0.79238 0.76848 0.78820 1.21097 1.22587 1.18827 1.21614 0.84994 0.94777 0.99630 1.22221 0.81282 0.96098 0.96319 0.90770 1.86463 1.20138 1.82618 1.48618 0.88797 0.87252 0.89149 0.77320 0.79982 0.90203 0.89140 0.86363 0.87477 0.74978 0.92148 0.91040 0.99237 0.91808 0.94023 0.90691 0.97265 0.75437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.97 127.77 1.40 1.85 16 2 N -0.46 -7.05 3.15 -537.62 -1.69 -8.75 16 3 C -0.05 -0.66 11.58 83.09 0.96 0.30 16 4 C -0.06 -1.17 11.87 83.53 0.99 -0.18 16 5 N -0.53 -13.68 11.25 -188.13 -2.12 -15.79 16 6 C 0.19 4.15 7.16 138.13 0.99 5.14 16 7 C -0.01 -0.26 4.81 29.85 0.14 -0.12 16 8 C -0.12 -2.20 5.68 29.84 0.17 -2.04 16 9 C 0.51 14.25 7.79 87.66 0.68 14.94 16 10 O -0.59 -21.86 15.64 -3.04 -0.05 -21.90 16 11 N -0.70 -18.80 4.92 -442.43 -2.18 -20.98 16 12 C 0.17 5.86 2.12 45.02 0.10 5.95 16 13 H 0.05 2.24 7.58 -2.39 -0.02 2.22 16 14 C -0.13 -4.85 5.65 30.67 0.17 -4.68 16 15 C 0.18 8.72 5.32 86.36 0.46 9.18 16 16 N -0.60 -29.50 3.00 -699.93 -2.10 -31.60 16 17 C -0.26 -13.91 9.59 84.03 0.81 -13.11 16 18 H 0.08 3.81 7.89 -2.91 -0.02 3.79 16 19 C -0.05 -2.81 4.90 84.86 0.42 -2.40 16 20 N -0.94 -55.19 11.20 21.65 0.24 -54.95 16 21 Si 0.97 43.47 29.59 68.60 2.03 45.50 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 25 C 0.12 4.62 6.11 86.22 0.53 5.15 16 26 C 0.10 3.21 3.13 30.53 0.10 3.31 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 O -0.57 -15.42 13.16 -148.98 -1.96 -17.38 16 29 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.09 0.72 7.04 -2.39 -0.02 0.71 16 32 H 0.21 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.08 2.09 8.10 -2.39 -0.02 2.07 16 35 H 0.09 1.82 7.02 -2.39 -0.02 1.80 16 36 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.11 1.96 8.14 -2.39 -0.02 1.95 16 38 H 0.41 8.29 8.60 -92.71 -0.80 7.49 16 39 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 40 H 0.07 2.54 8.14 -2.38 -0.02 2.53 16 41 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 42 H 0.06 3.48 6.03 -2.39 -0.01 3.47 16 43 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 45 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.40 7.05 9.08 -74.06 -0.67 6.38 16 Total: -1.00 -78.28 376.89 -0.38 -78.66 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -0.47 Total: 23.88 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: 7.91 Total: 23.31 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -7.84 Total: -132.07 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -2.01 Total: -39.28 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -78.28 -0.38 -78.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099927417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.981 kcal (2) G-P(sol) polarization free energy of solvation -78.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds