Wall clock time and date at job start Fri Apr 10 2020 18:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35049 * 126.39571 * 2 1 4 4 N 1.30506 * 108.69699 * 179.97438 * 3 2 1 5 5 C 1.34123 * 109.25765 * 359.75346 * 4 3 2 6 6 C 1.34674 * 108.02226 * 0.40161 * 5 4 3 7 7 C 1.50699 * 126.59419 * 179.87779 * 6 5 4 8 8 C 1.52998 * 109.47214 * 84.67719 * 7 6 5 9 9 C 1.50694 * 109.46877 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00654 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00091 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00361 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.45307 * 35.03406 * 12 11 9 14 14 C 1.53044 * 109.46189 * 275.06459 * 12 11 9 15 15 C 1.52755 * 109.38132 * 301.22024 * 14 12 11 16 16 N 1.46923 * 109.00900 * 305.58408 * 15 14 12 17 17 C 1.36943 * 120.62930 * 233.58508 * 16 15 14 18 18 H 1.08000 * 119.99888 * 152.17192 * 17 16 15 19 19 C 1.38811 * 119.99955 * 332.17173 * 17 16 15 20 20 N 1.31614 * 120.00254 * 342.76805 * 19 17 16 21 21 Si 1.86801 * 119.99678 * 162.77313 * 19 17 16 22 22 H 1.48501 * 109.46686 * 269.99566 * 21 19 17 23 23 H 1.48499 * 109.47518 * 29.99570 * 21 19 17 24 24 H 1.48502 * 109.46873 * 149.99729 * 21 19 17 25 25 C 1.46927 * 118.73893 * 53.31139 * 16 15 14 26 26 C 1.53046 * 109.46379 * 154.99790 * 12 11 9 27 27 H 1.08995 * 109.52949 * 178.62445 * 26 12 11 28 28 O 1.42898 * 109.49343 * 298.70602 * 26 12 11 29 29 H 1.08995 * 109.47103 * 270.00428 * 1 2 3 30 30 H 1.09001 * 109.46746 * 30.00181 * 1 2 3 31 31 H 1.08997 * 109.46729 * 150.00067 * 1 2 3 32 32 H 1.07995 * 125.64979 * 0.02562 * 3 2 1 33 33 H 1.07994 * 125.99108 * 180.24517 * 5 4 3 34 34 H 1.09007 * 109.46480 * 324.67942 * 7 6 5 35 35 H 1.08997 * 109.46999 * 204.68320 * 7 6 5 36 36 H 1.09004 * 109.46722 * 60.00591 * 8 7 6 37 37 H 1.08997 * 109.47628 * 300.00216 * 8 7 6 38 38 H 0.97006 * 119.99741 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.49256 * 61.29397 * 14 12 11 40 40 H 1.08998 * 109.49776 * 181.36062 * 14 12 11 41 41 H 1.09005 * 109.50719 * 185.70148 * 15 14 12 42 42 H 1.09006 * 109.43430 * 65.42411 * 15 14 12 43 43 H 0.96995 * 120.00322 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.58525 * 66.43417 * 25 16 15 45 45 H 1.08999 * 109.58786 * 186.85311 * 25 16 15 46 46 H 0.96702 * 113.99942 * 179.83960 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5096 0.6903 0.0006 5 6 3.5461 -0.6504 0.0064 6 6 2.2773 -1.1018 0.0006 7 6 1.8364 -2.5428 0.0013 8 6 1.8074 -3.0666 1.4386 9 6 1.3671 -4.5078 1.4392 10 8 1.1030 -5.0617 0.3931 11 7 1.2669 -5.1813 2.6023 12 6 0.8394 -6.5825 2.6029 13 1 1.2262 -7.0804 1.7138 14 6 -0.6896 -6.6491 2.6002 15 6 -1.2308 -5.9238 3.8308 16 7 -0.6041 -6.4888 5.0335 17 6 -1.3720 -6.9487 6.0699 18 1 -0.9983 -7.7320 6.7127 19 6 -2.6307 -6.4081 6.2942 20 7 -2.9564 -5.2527 5.7547 21 14 -3.8622 -7.3206 7.3620 22 1 -4.6761 -8.2280 6.5138 23 1 -3.1369 -8.1167 8.3844 24 1 -4.7528 -6.3423 8.0367 25 6 0.8621 -6.5566 5.1006 26 6 1.3798 -7.2800 3.8535 27 1 1.0420 -8.3162 3.8674 28 8 2.8082 -7.2441 3.8398 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9334 2.1144 0.0004 33 1 4.4368 -1.2610 0.0119 34 1 2.5351 -3.1368 -0.5879 35 1 0.8395 -2.6180 -0.4330 36 1 1.1087 -2.4726 2.0277 37 1 2.8043 -2.9914 1.8729 38 1 1.4785 -4.7384 3.4390 39 1 -1.0728 -6.1728 1.6977 40 1 -1.0083 -7.6912 2.6250 41 1 -2.3114 -6.0561 3.8853 42 1 -0.9938 -4.8622 3.7595 43 1 -3.8358 -4.8748 5.9117 44 1 1.2733 -5.5477 5.1351 45 1 1.1620 -7.1063 5.9928 46 1 3.2196 -7.6670 4.6060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100094378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:56 Heat of formation + Delta-G solvation = -6.683224 kcal Electronic energy + Delta-G solvation = -27797.474619 eV Core-core repulsion = 23916.675881 eV Total energy + Delta-G solvation = -3880.798738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 4.01 seconds Orbital eigenvalues (eV) -42.20740 -39.87228 -38.01861 -35.49141 -34.39120 -34.06000 -33.60766 -31.78397 -30.33629 -29.04871 -28.38014 -27.14924 -25.51185 -24.40534 -22.35414 -21.91527 -21.54929 -20.58449 -19.83577 -18.75415 -17.43095 -17.17512 -16.81961 -16.45834 -15.87013 -15.64829 -15.21376 -14.99497 -14.57159 -14.36504 -14.05615 -13.88622 -13.64401 -13.41754 -13.18449 -13.05694 -13.00896 -12.81074 -12.50030 -12.27401 -12.12311 -11.97832 -11.70913 -11.24568 -11.20144 -10.95202 -10.71315 -10.43091 -10.24804 -10.05609 -10.00816 -9.88450 -9.72501 -9.54631 -9.47806 -8.64107 -8.56135 -8.43747 -6.83989 -5.92963 -3.37001 1.88489 2.63208 2.93113 3.05229 3.29448 3.36852 3.37462 3.52053 4.31554 4.46745 4.49970 4.55035 4.60302 4.84980 4.89980 4.94691 5.14254 5.19347 5.22510 5.28396 5.35050 5.40878 5.51572 5.53975 5.57291 5.66253 5.76477 5.92352 5.97147 6.02170 6.21758 6.29237 6.40304 6.49857 6.60028 6.63156 6.64794 6.91916 7.04377 7.21327 7.51857 7.66030 7.85884 7.88087 7.95368 8.29677 8.53550 9.05580 9.67814 10.22862 11.15255 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015008 B = 0.003046 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.277398 B = 9190.422144 C =10285.591451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.458 5.458 3 C 0.174 3.826 4 N -0.495 5.495 5 C -0.027 4.027 6 C -0.019 4.019 7 C -0.025 4.025 8 C -0.135 4.135 9 C 0.514 3.486 10 O -0.554 6.554 11 N -0.704 5.704 12 C 0.166 3.834 13 H 0.078 0.922 14 C -0.153 4.153 15 C 0.173 3.827 16 N -0.587 5.587 17 C -0.259 4.259 18 H 0.067 0.933 19 C 0.006 3.994 20 N -0.900 5.900 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.279 1.279 24 H -0.291 1.291 25 C 0.119 3.881 26 C 0.075 3.925 27 H 0.066 0.934 28 O -0.571 6.571 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.203 0.797 33 H 0.168 0.832 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.402 0.598 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.020 0.980 43 H 0.255 0.745 44 H 0.023 0.977 45 H 0.059 0.941 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.571 6.867 -8.944 13.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.141 5.141 3 C -0.108 4.108 4 N -0.213 5.213 5 C -0.175 4.175 6 C -0.134 4.134 7 C -0.064 4.064 8 C -0.175 4.175 9 C 0.301 3.699 10 O -0.433 6.433 11 N -0.355 5.355 12 C 0.061 3.939 13 H 0.096 0.904 14 C -0.193 4.193 15 C 0.047 3.953 16 N -0.311 5.311 17 C -0.389 4.389 18 H 0.085 0.915 19 C -0.193 4.193 20 N -0.543 5.543 21 Si 0.734 3.266 22 H -0.213 1.213 23 H -0.204 1.204 24 H -0.217 1.217 25 C -0.009 4.009 26 C 0.014 3.986 27 H 0.083 0.917 28 O -0.375 6.375 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.220 0.780 33 H 0.186 0.814 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.238 0.762 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.038 0.962 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.077 0.923 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.640 7.398 -10.209 14.742 hybrid contribution -1.361 -0.913 1.625 2.309 sum 6.279 6.485 -8.583 12.456 Atomic orbital electron populations 1.22100 0.76505 1.04789 1.04097 1.45343 1.07691 1.06763 1.54321 1.24901 0.85702 0.93409 1.06743 1.70263 1.19437 1.12091 1.19512 1.22080 0.95793 0.91049 1.08571 1.21331 0.91274 0.89836 1.10941 1.19727 1.03223 0.87311 0.96173 1.21628 1.03920 0.93450 0.98524 1.20464 0.77249 0.88427 0.83810 1.90665 1.50882 1.70162 1.31553 1.45958 1.67631 1.12928 1.08987 1.20815 0.94933 0.80970 0.97202 0.90372 1.22513 0.93374 1.02260 1.01154 1.20690 0.99159 0.93421 0.82029 1.43999 0.98487 1.72543 1.16089 1.19176 0.97927 1.13815 1.07941 0.91541 1.25043 0.99750 0.95427 0.99093 1.70026 1.20882 1.15895 1.47525 0.86262 0.81329 0.79016 0.79966 1.21318 1.20387 1.21697 1.21538 0.87060 0.97324 0.94955 1.22745 0.79697 0.99247 0.96869 0.91651 1.86481 1.19675 1.82637 1.48708 0.90101 0.89404 0.89345 0.78040 0.81423 0.88748 0.90476 0.89178 0.88555 0.76237 0.91887 0.91561 0.89289 0.96193 0.93517 0.95962 0.92278 0.77978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 11.00 59.85 0.66 1.11 16 2 N -0.46 -4.53 3.15 -121.37 -0.38 -4.92 16 3 C 0.17 1.80 12.56 -90.36 -1.14 0.66 16 4 N -0.50 -6.50 11.25 -14.67 -0.16 -6.67 16 5 C -0.03 -0.33 11.79 -17.81 -0.21 -0.54 16 6 C -0.02 -0.21 6.21 -81.60 -0.51 -0.72 16 7 C -0.03 -0.28 4.84 -27.88 -0.13 -0.42 16 8 C -0.13 -1.57 5.68 -27.89 -0.16 -1.73 16 9 C 0.51 7.89 7.79 -10.99 -0.09 7.80 16 10 O -0.55 -10.12 15.65 5.56 0.09 -10.03 16 11 N -0.70 -11.17 4.16 -53.76 -0.22 -11.40 16 12 C 0.17 2.86 2.47 -67.89 -0.17 2.69 16 13 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 14 C -0.15 -2.89 5.75 -26.83 -0.15 -3.05 16 15 C 0.17 3.85 5.03 -3.94 -0.02 3.83 16 16 N -0.59 -13.50 3.00 -172.58 -0.52 -14.02 16 17 C -0.26 -6.67 9.58 -15.06 -0.14 -6.81 16 18 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 19 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 20 N -0.90 -24.76 11.19 55.49 0.62 -24.14 16 21 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 25 C 0.12 2.22 5.85 -3.71 -0.02 2.19 16 26 C 0.08 1.23 3.36 -26.61 -0.09 1.14 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 O -0.57 -8.25 13.21 -35.23 -0.47 -8.72 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.59 7.12 -51.93 -0.37 0.22 16 32 H 0.20 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.09 1.07 8.10 -51.92 -0.42 0.65 16 35 H 0.08 0.88 7.05 -51.93 -0.37 0.51 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.40 6.16 6.87 -40.82 -0.28 5.88 16 39 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 42 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 43 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.02 0.42 6.64 -51.93 -0.34 0.08 16 45 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 46 H 0.37 3.85 9.08 45.56 0.41 4.26 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -33.01 372.80 -8.96 -41.97 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.24 Total: 10.34 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -2.25 Total: 6.25 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.67 Total: -61.15 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.38 Total: -18.75 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.01 -8.96 -41.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100094378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.286 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.01 seconds