Wall clock time and date at job start Fri Apr 10 2020 18:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35049 * 126.39571 * 2 1 4 4 N 1.30506 * 108.69699 * 179.97438 * 3 2 1 5 5 C 1.34123 * 109.25765 * 359.75346 * 4 3 2 6 6 C 1.34674 * 108.02226 * 0.40161 * 5 4 3 7 7 C 1.50699 * 126.59419 * 179.87779 * 6 5 4 8 8 C 1.52998 * 109.47214 * 84.67719 * 7 6 5 9 9 C 1.50694 * 109.46877 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00654 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00091 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00361 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.45307 * 35.03406 * 12 11 9 14 14 C 1.53044 * 109.46189 * 275.06459 * 12 11 9 15 15 C 1.52755 * 109.38132 * 301.22024 * 14 12 11 16 16 N 1.46923 * 109.00900 * 305.58408 * 15 14 12 17 17 C 1.36943 * 120.62930 * 233.58508 * 16 15 14 18 18 H 1.08000 * 119.99888 * 152.17192 * 17 16 15 19 19 C 1.38811 * 119.99955 * 332.17173 * 17 16 15 20 20 N 1.31614 * 120.00254 * 342.76805 * 19 17 16 21 21 Si 1.86801 * 119.99678 * 162.77313 * 19 17 16 22 22 H 1.48501 * 109.46686 * 269.99566 * 21 19 17 23 23 H 1.48499 * 109.47518 * 29.99570 * 21 19 17 24 24 H 1.48502 * 109.46873 * 149.99729 * 21 19 17 25 25 C 1.46927 * 118.73893 * 53.31139 * 16 15 14 26 26 C 1.53046 * 109.46379 * 154.99790 * 12 11 9 27 27 H 1.08995 * 109.52949 * 178.62445 * 26 12 11 28 28 O 1.42898 * 109.49343 * 298.70602 * 26 12 11 29 29 H 1.08995 * 109.47103 * 270.00428 * 1 2 3 30 30 H 1.09001 * 109.46746 * 30.00181 * 1 2 3 31 31 H 1.08997 * 109.46729 * 150.00067 * 1 2 3 32 32 H 1.07995 * 125.64979 * 0.02562 * 3 2 1 33 33 H 1.07994 * 125.99108 * 180.24517 * 5 4 3 34 34 H 1.09007 * 109.46480 * 324.67942 * 7 6 5 35 35 H 1.08997 * 109.46999 * 204.68320 * 7 6 5 36 36 H 1.09004 * 109.46722 * 60.00591 * 8 7 6 37 37 H 1.08997 * 109.47628 * 300.00216 * 8 7 6 38 38 H 0.97006 * 119.99741 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.49256 * 61.29397 * 14 12 11 40 40 H 1.08998 * 109.49776 * 181.36062 * 14 12 11 41 41 H 1.09005 * 109.50719 * 185.70148 * 15 14 12 42 42 H 1.09006 * 109.43430 * 65.42411 * 15 14 12 43 43 H 0.96995 * 120.00322 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.58525 * 66.43417 * 25 16 15 45 45 H 1.08999 * 109.58786 * 186.85311 * 25 16 15 46 46 H 0.96702 * 113.99942 * 179.83960 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5096 0.6903 0.0006 5 6 3.5461 -0.6504 0.0064 6 6 2.2773 -1.1018 0.0006 7 6 1.8364 -2.5428 0.0013 8 6 1.8074 -3.0666 1.4386 9 6 1.3671 -4.5078 1.4392 10 8 1.1030 -5.0617 0.3931 11 7 1.2669 -5.1813 2.6023 12 6 0.8394 -6.5825 2.6029 13 1 1.2262 -7.0804 1.7138 14 6 -0.6896 -6.6491 2.6002 15 6 -1.2308 -5.9238 3.8308 16 7 -0.6041 -6.4888 5.0335 17 6 -1.3720 -6.9487 6.0699 18 1 -0.9983 -7.7320 6.7127 19 6 -2.6307 -6.4081 6.2942 20 7 -2.9564 -5.2527 5.7547 21 14 -3.8622 -7.3206 7.3620 22 1 -4.6761 -8.2280 6.5138 23 1 -3.1369 -8.1167 8.3844 24 1 -4.7528 -6.3423 8.0367 25 6 0.8621 -6.5566 5.1006 26 6 1.3798 -7.2800 3.8535 27 1 1.0420 -8.3162 3.8674 28 8 2.8082 -7.2441 3.8398 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9334 2.1144 0.0004 33 1 4.4368 -1.2610 0.0119 34 1 2.5351 -3.1368 -0.5879 35 1 0.8395 -2.6180 -0.4330 36 1 1.1087 -2.4726 2.0277 37 1 2.8043 -2.9914 1.8729 38 1 1.4785 -4.7384 3.4390 39 1 -1.0728 -6.1728 1.6977 40 1 -1.0083 -7.6912 2.6250 41 1 -2.3114 -6.0561 3.8853 42 1 -0.9938 -4.8622 3.7595 43 1 -3.8358 -4.8748 5.9117 44 1 1.2733 -5.5477 5.1351 45 1 1.1620 -7.1063 5.9928 46 1 3.2196 -7.6670 4.6060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100094378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:53 Heat of formation + Delta-G solvation = -29.178024 kcal Electronic energy + Delta-G solvation = -27798.450066 eV Core-core repulsion = 23916.675881 eV Total energy + Delta-G solvation = -3881.774186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.01027 -41.21159 -39.40660 -36.94154 -35.62464 -35.16250 -34.50087 -33.49793 -31.91246 -30.37150 -29.55720 -27.78355 -27.23549 -25.49943 -23.89838 -23.57311 -22.35404 -21.79941 -20.68156 -20.26308 -18.86576 -18.39874 -17.97492 -17.64975 -16.94031 -16.81075 -16.64451 -16.39482 -15.88732 -15.67706 -15.37688 -15.22647 -14.90497 -14.58001 -14.39909 -14.08730 -13.86793 -13.78888 -13.66473 -13.50933 -13.36083 -13.23550 -13.01460 -12.95006 -12.76127 -12.34229 -12.17969 -12.14865 -11.97607 -11.83949 -11.29231 -11.02942 -10.93542 -10.82978 -10.51555 -10.48112 -9.98174 -9.28947 -8.71221 -7.89878 -5.35378 1.07598 1.47419 1.50059 1.57169 1.70419 1.93235 2.18077 2.33193 2.49284 3.16131 3.26658 3.60459 3.66717 3.88866 3.91965 3.95364 3.99369 4.03708 4.07836 4.20242 4.26966 4.39034 4.41695 4.47829 4.54574 4.58691 4.68935 4.70677 4.72288 4.88675 4.93970 4.97297 5.05009 5.08470 5.14401 5.42383 5.47279 5.56460 5.63323 5.70418 5.80126 6.32275 6.35192 6.60278 6.88913 7.12181 7.13643 7.29382 7.80974 8.31574 9.16244 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015008 B = 0.003046 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.277398 B = 9190.422144 C =10285.591451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.459 5.459 3 C 0.179 3.821 4 N -0.535 5.535 5 C -0.045 4.045 6 C -0.026 4.026 7 C -0.015 4.015 8 C -0.123 4.123 9 C 0.513 3.487 10 O -0.584 6.584 11 N -0.704 5.704 12 C 0.168 3.832 13 H 0.074 0.926 14 C -0.139 4.139 15 C 0.186 3.814 16 N -0.602 5.602 17 C -0.264 4.264 18 H 0.071 0.929 19 C -0.045 4.045 20 N -0.930 5.930 21 Si 0.964 3.036 22 H -0.288 1.288 23 H -0.268 1.268 24 H -0.297 1.297 25 C 0.119 3.881 26 C 0.095 3.905 27 H 0.067 0.933 28 O -0.570 6.570 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.237 0.763 33 H 0.175 0.825 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.406 0.594 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.006 0.994 43 H 0.250 0.750 44 H 0.027 0.973 45 H 0.067 0.933 46 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.258 6.962 -8.704 13.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.141 5.141 3 C -0.103 4.103 4 N -0.253 5.253 5 C -0.193 4.193 6 C -0.141 4.141 7 C -0.054 4.054 8 C -0.163 4.163 9 C 0.301 3.699 10 O -0.465 6.465 11 N -0.354 5.354 12 C 0.063 3.937 13 H 0.092 0.908 14 C -0.180 4.180 15 C 0.060 3.940 16 N -0.327 5.327 17 C -0.394 4.394 18 H 0.088 0.912 19 C -0.241 4.241 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.215 1.215 23 H -0.192 1.192 24 H -0.224 1.224 25 C -0.007 4.007 26 C 0.034 3.966 27 H 0.085 0.915 28 O -0.377 6.377 29 H 0.103 0.897 30 H 0.134 0.866 31 H 0.105 0.895 32 H 0.253 0.747 33 H 0.192 0.808 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.131 0.869 38 H 0.242 0.758 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.024 0.976 43 H 0.059 0.941 44 H 0.045 0.955 45 H 0.086 0.914 46 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 8.361 7.474 -9.948 14.991 hybrid contribution -1.521 -0.921 1.546 2.356 sum 6.840 6.553 -8.402 12.662 Atomic orbital electron populations 1.22337 0.74645 1.06162 1.04780 1.45549 1.08844 1.06229 1.53518 1.25592 0.85121 0.94778 1.04843 1.70244 1.21220 1.12565 1.21305 1.22325 0.96591 0.91225 1.09115 1.21270 0.91333 0.90108 1.11393 1.19586 1.02844 0.87358 0.95636 1.21582 1.04763 0.90771 0.99192 1.21055 0.76282 0.89559 0.83021 1.90651 1.52170 1.71118 1.32522 1.45956 1.67545 1.12467 1.09459 1.20667 0.93468 0.82039 0.97561 0.90830 1.22311 0.94848 1.01621 0.99180 1.20388 0.97166 0.93029 0.83396 1.44169 1.00302 1.72532 1.15698 1.19502 0.98390 1.13495 1.08029 0.91158 1.25727 1.01421 0.96165 1.00807 1.70160 1.20842 1.17278 1.49243 0.85325 0.79147 0.77695 0.78602 1.21498 1.19249 1.22391 1.21670 0.84502 0.97990 0.96573 1.22343 0.80793 0.98662 0.94837 0.91473 1.86453 1.18137 1.83024 1.50124 0.89708 0.86620 0.89513 0.74668 0.80810 0.89178 0.90884 0.88447 0.86948 0.75803 0.92189 0.91529 0.92894 0.97629 0.94136 0.95541 0.91447 0.75519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 11.00 127.77 1.41 2.11 16 2 N -0.46 -8.33 3.15 -537.89 -1.70 -10.03 16 3 C 0.18 3.37 12.56 180.26 2.26 5.63 16 4 N -0.53 -13.57 11.25 -200.31 -2.25 -15.82 16 5 C -0.05 -1.08 11.79 83.53 0.98 -0.09 16 6 C -0.03 -0.55 6.21 40.95 0.25 -0.30 16 7 C -0.02 -0.33 4.84 29.85 0.14 -0.18 16 8 C -0.12 -2.71 5.68 29.85 0.17 -2.54 16 9 C 0.51 15.27 7.79 87.66 0.68 15.95 16 10 O -0.58 -21.05 15.65 -3.03 -0.05 -21.09 16 11 N -0.70 -21.55 4.16 -442.40 -1.84 -23.39 16 12 C 0.17 5.62 2.47 45.02 0.11 5.73 16 13 H 0.07 2.59 7.58 -2.38 -0.02 2.57 16 14 C -0.14 -5.25 5.75 30.53 0.18 -5.08 16 15 C 0.19 8.40 5.03 86.22 0.43 8.83 16 16 N -0.60 -27.45 3.00 -699.93 -2.10 -29.55 16 17 C -0.26 -13.47 9.58 84.03 0.81 -12.67 16 18 H 0.07 3.47 7.89 -2.91 -0.02 3.44 16 19 C -0.05 -2.38 4.91 84.86 0.42 -1.97 16 20 N -0.93 -52.07 11.19 21.65 0.24 -51.82 16 21 Si 0.96 42.75 29.59 68.60 2.03 44.78 16 22 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 25 C 0.12 4.25 5.85 86.36 0.50 4.75 16 26 C 0.09 2.91 3.36 30.67 0.10 3.02 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 O -0.57 -14.85 13.21 -148.98 -1.97 -16.82 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 1.03 7.12 -2.39 -0.02 1.02 16 32 H 0.24 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.17 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.09 2.00 8.10 -2.38 -0.02 1.98 16 35 H 0.07 1.62 7.05 -2.39 -0.02 1.60 16 36 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.41 11.86 6.87 -92.70 -0.64 11.22 16 39 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.05 2.78 6.04 -2.38 -0.01 2.77 16 42 H 0.01 0.27 7.74 -2.38 -0.02 0.25 16 43 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 44 H 0.03 0.95 6.64 -2.38 -0.02 0.93 16 45 H 0.07 2.29 7.93 -2.39 -0.02 2.27 16 46 H 0.39 6.78 9.08 -74.06 -0.67 6.11 16 Total: -1.00 -70.86 372.80 0.52 -70.34 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -0.30 Total: 30.20 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 8.46 Total: 23.20 kcal Atomic # 7 Polarization: -122.97 SS G_CDS: -7.65 Total: -130.61 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -2.02 Total: -37.91 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -70.86 0.52 -70.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100094378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.162 kcal (2) G-P(sol) polarization free energy of solvation -70.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds