Wall clock time and date at job start Fri Apr 10 2020 18:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35041 * 126.39873 * 2 1 4 4 N 1.30504 * 108.69922 * 179.97438 * 3 2 1 5 5 C 1.34133 * 109.25142 * 359.75825 * 4 3 2 6 6 C 1.34662 * 108.02359 * 0.39468 * 5 4 3 7 7 C 1.50705 * 126.58988 * 179.87354 * 6 5 4 8 8 C 1.53007 * 109.46817 * 84.68882 * 7 6 5 9 9 C 1.50696 * 109.46715 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00354 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99756 * 179.72571 * 9 8 7 12 12 C 1.46496 * 119.99883 * 180.27567 * 11 9 8 13 13 H 1.08996 * 109.46113 * 325.02347 * 12 11 9 14 14 C 1.53039 * 109.46077 * 85.00274 * 12 11 9 15 15 C 1.53181 * 109.31699 * 58.65406 * 14 12 11 16 16 N 1.46923 * 108.77946 * 54.63452 * 15 14 12 17 17 C 1.36937 * 120.63343 * 126.37365 * 16 15 14 18 18 H 1.08005 * 119.99853 * 207.68942 * 17 16 15 19 19 C 1.38804 * 120.00102 * 27.68131 * 17 16 15 20 20 N 1.31619 * 120.00065 * 17.37489 * 19 17 16 21 21 Si 1.86800 * 120.00229 * 197.37523 * 19 17 16 22 22 H 1.48495 * 109.46978 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46933 * 120.00222 * 21 19 17 24 24 H 1.48496 * 109.47162 * 239.99770 * 21 19 17 25 25 C 1.46928 * 118.73635 * 306.39596 * 16 15 14 26 26 C 1.53051 * 109.45729 * 205.06795 * 12 11 9 27 27 H 1.09002 * 109.49472 * 181.39578 * 26 12 11 28 28 O 1.42898 * 109.49727 * 61.29538 * 26 12 11 29 29 H 1.08995 * 109.47354 * 270.00249 * 1 2 3 30 30 H 1.09007 * 109.47108 * 30.00137 * 1 2 3 31 31 H 1.08997 * 109.47140 * 149.99810 * 1 2 3 32 32 H 1.07999 * 125.64851 * 359.97438 * 3 2 1 33 33 H 1.08003 * 125.98078 * 180.24458 * 5 4 3 34 34 H 1.08993 * 109.47165 * 324.68919 * 7 6 5 35 35 H 1.09005 * 109.47126 * 204.68608 * 7 6 5 36 36 H 1.09003 * 109.46717 * 59.99986 * 8 7 6 37 37 H 1.08997 * 109.47209 * 300.00032 * 8 7 6 38 38 H 0.97000 * 120.00088 * 0.27558 * 11 9 8 39 39 H 1.09004 * 109.49563 * 178.60504 * 14 12 11 40 40 H 1.09006 * 109.49421 * 298.69848 * 14 12 11 41 41 H 1.09000 * 109.59221 * 174.42890 * 15 14 12 42 42 H 1.09000 * 109.58398 * 294.84829 * 15 14 12 43 43 H 0.97000 * 120.00514 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.58715 * 173.39495 * 25 16 15 45 45 H 1.08997 * 109.58767 * 293.67349 * 25 16 15 46 46 H 0.96692 * 113.99564 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6902 0.0006 5 6 3.5459 -0.6506 0.0063 6 6 2.2772 -1.1018 0.0005 7 6 1.8362 -2.5429 0.0012 8 6 1.8072 -3.0667 1.4385 9 6 1.3657 -4.5076 1.4391 10 8 1.0999 -5.0609 0.3931 11 7 1.2709 -5.1828 2.6017 12 6 0.8475 -6.5852 2.6018 13 1 0.1087 -6.7416 1.8159 14 6 2.0600 -7.4839 2.3480 15 6 3.1104 -7.2367 3.4351 16 7 2.4836 -7.4264 4.7503 17 6 3.0301 -8.2852 5.6663 18 1 2.3992 -8.7652 6.3999 19 6 4.3946 -8.5390 5.6519 20 7 5.2085 -7.7264 5.0119 21 14 5.0761 -10.0341 6.5407 22 1 3.9622 -10.7818 7.1772 23 1 5.7704 -10.9148 5.5673 24 1 6.0374 -9.5943 7.5836 25 6 1.2591 -6.6775 5.0639 26 6 0.2293 -6.9310 3.9585 27 1 -0.0635 -7.9810 3.9679 28 8 -0.9208 -6.1125 4.1811 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8899 -0.5138 32 1 1.9335 2.1144 -0.0004 33 1 4.4368 -1.2612 0.0118 34 1 2.5348 -3.1369 -0.5880 35 1 0.8392 -2.6180 -0.4331 36 1 1.1085 -2.4727 2.0276 37 1 2.8041 -2.9916 1.8728 38 1 1.4831 -4.7402 3.4383 39 1 1.7500 -8.5286 2.3725 40 1 2.4857 -7.2531 1.3714 41 1 3.9322 -7.9429 3.3167 42 1 3.4875 -6.2172 3.3537 43 1 6.1621 -7.9035 5.0021 44 1 0.8592 -7.0148 6.0202 45 1 1.4857 -5.6127 5.1178 46 1 -1.3643 -6.2785 5.0241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100094379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:05 Heat of formation + Delta-G solvation = -5.975645 kcal Electronic energy + Delta-G solvation = -27745.562131 eV Core-core repulsion = 23864.794076 eV Total energy + Delta-G solvation = -3880.768055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.21596 -39.86553 -38.01094 -35.48650 -34.40662 -34.05772 -33.61595 -31.76223 -30.30904 -29.03176 -28.37593 -27.19302 -25.49331 -24.40262 -22.34190 -21.89702 -21.55636 -20.58477 -19.84668 -18.74723 -17.44152 -17.17101 -16.83091 -16.45587 -15.88750 -15.66707 -15.20396 -14.96749 -14.62750 -14.33812 -14.02674 -13.81934 -13.67174 -13.45387 -13.22808 -13.10906 -13.01816 -12.73799 -12.52367 -12.25492 -12.13591 -11.97598 -11.69442 -11.23272 -11.19822 -10.92970 -10.70262 -10.39237 -10.23215 -10.04950 -9.98989 -9.87740 -9.74039 -9.54638 -9.46105 -8.63221 -8.54216 -8.43895 -6.81347 -5.89989 -3.34206 1.87246 2.60074 2.93074 3.05995 3.30973 3.39383 3.40902 3.52277 4.32650 4.43120 4.47689 4.54652 4.58092 4.78370 4.87536 4.93147 5.07730 5.17406 5.25090 5.27610 5.36149 5.43502 5.48230 5.54963 5.60753 5.66749 5.76435 5.93350 5.97478 6.03229 6.23336 6.28106 6.41027 6.51464 6.61105 6.64091 6.66492 6.92648 7.03255 7.24427 7.55858 7.68864 7.85981 7.86517 7.95629 8.32343 8.53607 9.08168 9.70450 10.25480 11.18092 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016543 B = 0.002917 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.160573 B = 9597.491040 C =10551.728274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.460 5.460 3 C 0.173 3.827 4 N -0.494 5.494 5 C -0.024 4.024 6 C -0.020 4.020 7 C -0.025 4.025 8 C -0.135 4.135 9 C 0.514 3.486 10 O -0.554 6.554 11 N -0.704 5.704 12 C 0.166 3.834 13 H 0.077 0.923 14 C -0.153 4.153 15 C 0.172 3.828 16 N -0.587 5.587 17 C -0.260 4.260 18 H 0.067 0.933 19 C 0.006 3.994 20 N -0.898 5.898 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.119 3.881 26 C 0.075 3.925 27 H 0.066 0.934 28 O -0.572 6.572 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.203 0.797 33 H 0.170 0.830 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.402 0.598 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.022 0.978 43 H 0.255 0.745 44 H 0.058 0.942 45 H 0.022 0.978 46 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.523 12.663 -7.236 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.144 5.144 3 C -0.108 4.108 4 N -0.211 5.211 5 C -0.172 4.172 6 C -0.134 4.134 7 C -0.064 4.064 8 C -0.175 4.175 9 C 0.300 3.700 10 O -0.433 6.433 11 N -0.355 5.355 12 C 0.061 3.939 13 H 0.096 0.904 14 C -0.193 4.193 15 C 0.046 3.954 16 N -0.311 5.311 17 C -0.389 4.389 18 H 0.084 0.916 19 C -0.193 4.193 20 N -0.541 5.541 21 Si 0.733 3.267 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.216 1.216 25 C -0.009 4.009 26 C 0.015 3.985 27 H 0.084 0.916 28 O -0.376 6.376 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.219 0.781 33 H 0.188 0.812 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.238 0.762 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.040 0.960 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.040 0.960 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -10.838 12.999 -8.563 18.967 hybrid contribution -0.359 -1.194 1.540 1.981 sum -11.197 11.805 -7.023 17.721 Atomic orbital electron populations 1.22059 0.76767 1.04714 1.03777 1.45322 1.07543 1.06798 1.54698 1.24901 0.85741 0.93357 1.06851 1.70281 1.19377 1.12144 1.19334 1.22140 0.95929 0.91004 1.08108 1.21328 0.91283 0.89787 1.11037 1.19729 1.03120 0.87331 0.96211 1.21633 1.04098 0.93329 0.98465 1.20464 0.77268 0.88380 0.83843 1.90665 1.50680 1.70475 1.31447 1.45960 1.67844 1.12644 1.09060 1.20815 0.96166 0.80832 0.96075 0.90446 1.22587 0.97155 0.98679 1.00917 1.20793 0.93216 0.99876 0.81472 1.44019 1.25977 1.48400 1.12726 1.19186 0.90288 1.17761 1.11688 0.91560 1.25048 0.96053 0.98660 0.99558 1.70035 1.02807 1.35385 1.45919 0.86219 0.78817 0.82685 0.78983 1.20242 1.21431 1.21646 1.21526 0.88707 0.95203 0.95445 1.22755 0.85744 0.93819 0.96224 0.91636 1.86469 1.43574 1.64782 1.42780 0.90386 0.89462 0.89453 0.78066 0.81247 0.88592 0.90635 0.89509 0.88233 0.76237 0.91559 0.91814 0.89215 0.96017 0.93496 0.92339 0.96013 0.78012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 11.00 59.85 0.66 1.05 16 2 N -0.46 -4.33 3.15 -121.36 -0.38 -4.72 16 3 C 0.17 1.75 12.56 -90.37 -1.14 0.61 16 4 N -0.49 -6.58 11.25 -14.66 -0.16 -6.74 16 5 C -0.02 -0.30 11.79 -17.81 -0.21 -0.51 16 6 C -0.02 -0.22 6.21 -81.60 -0.51 -0.73 16 7 C -0.02 -0.28 4.84 -27.88 -0.13 -0.41 16 8 C -0.13 -1.57 5.68 -27.88 -0.16 -1.73 16 9 C 0.51 7.89 7.79 -10.99 -0.09 7.80 16 10 O -0.55 -10.11 15.64 5.56 0.09 -10.03 16 11 N -0.70 -11.18 4.15 -53.77 -0.22 -11.40 16 12 C 0.17 2.87 2.47 -67.89 -0.17 2.70 16 13 H 0.08 1.40 7.57 -51.93 -0.39 1.01 16 14 C -0.15 -2.93 5.77 -26.62 -0.15 -3.08 16 15 C 0.17 3.89 5.05 -3.72 -0.02 3.87 16 16 N -0.59 -13.61 2.99 -172.33 -0.52 -14.13 16 17 C -0.26 -6.74 9.58 -15.06 -0.14 -6.88 16 18 H 0.07 1.69 7.89 -52.48 -0.41 1.27 16 19 C 0.01 0.16 4.91 -17.43 -0.09 0.08 16 20 N -0.90 -25.04 11.19 55.49 0.62 -24.42 16 21 Si 0.90 20.93 29.59 -169.99 -5.03 15.90 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 25 C 0.12 2.22 5.84 -3.71 -0.02 2.20 16 26 C 0.08 1.23 3.36 -26.61 -0.09 1.14 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 O -0.57 -8.15 13.21 -35.23 -0.47 -8.62 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.28 8.14 -51.92 -0.42 -0.14 16 31 H 0.09 0.48 7.12 -51.93 -0.37 0.11 16 32 H 0.20 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.17 1.94 8.06 -52.48 -0.42 1.52 16 34 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 35 H 0.08 0.82 7.05 -51.93 -0.37 0.45 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.40 6.16 6.87 -40.82 -0.28 5.88 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.09 2.32 6.03 -51.93 -0.31 2.01 16 42 H 0.02 0.51 7.74 -51.93 -0.40 0.11 16 43 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 45 H 0.02 0.41 6.65 -51.93 -0.35 0.07 16 46 H 0.37 3.77 9.08 45.56 0.41 4.19 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -33.41 372.83 -8.95 -42.37 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.24 Total: 10.06 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -2.25 Total: 6.10 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -0.67 Total: -61.41 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.38 Total: -18.65 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.41 -8.95 -42.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100094379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.391 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds