Wall clock time and date at job start Fri Apr 10 2020 18:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47119 * 2 1 4 4 C 1.50695 * 109.47146 * 120.00524 * 2 1 3 5 5 O 1.21290 * 119.99900 * 120.00161 * 4 2 1 6 6 N 1.34767 * 120.00116 * 299.99606 * 4 2 1 7 7 C 1.46499 * 120.00065 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.47354 * 179.97438 * 7 6 4 9 9 C 1.52994 * 109.55410 * 304.87420 * 8 7 6 10 10 C 1.53292 * 109.51354 * 184.74649 * 8 7 6 11 11 N 1.47165 * 108.41376 * 187.79598 * 10 8 7 12 12 C 1.36935 * 120.99578 * 230.54471 * 11 10 8 13 13 H 1.07992 * 120.00186 * 153.32389 * 12 11 10 14 14 C 1.38816 * 119.99602 * 333.33361 * 12 11 10 15 15 N 1.31616 * 120.00208 * 343.52858 * 14 12 11 16 16 Si 1.86797 * 119.99898 * 163.53345 * 14 12 11 17 17 H 1.48500 * 109.47409 * 59.99733 * 16 14 12 18 18 H 1.48501 * 109.46973 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47195 * 299.99374 * 16 14 12 20 20 C 1.47151 * 118.02621 * 50.46989 * 11 10 8 21 21 C 1.53294 * 108.41779 * 309.52979 * 20 11 10 22 22 O 1.42966 * 109.22198 * 52.28429 * 21 20 11 23 23 N 1.46499 * 109.46841 * 240.00541 * 2 1 3 24 24 C 1.34956 * 126.03915 * 324.71704 * 23 2 1 25 25 C 1.35317 * 107.74670 * 179.83817 * 24 23 2 26 26 C 1.39871 * 107.91857 * 0.42486 * 25 24 23 27 27 N 1.30834 * 108.20712 * 359.73352 * 26 25 24 28 28 H 1.09000 * 109.47483 * 59.99606 * 1 2 3 29 29 H 1.09000 * 109.47596 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47144 * 299.99614 * 1 2 3 31 31 H 0.97002 * 120.00410 * 0.02562 * 6 4 2 32 32 H 1.09003 * 109.47415 * 60.00089 * 7 6 4 33 33 H 1.08998 * 109.47371 * 299.99944 * 7 6 4 34 34 H 1.08997 * 109.47587 * 180.12462 * 9 8 7 35 35 H 1.09005 * 109.47135 * 300.12598 * 9 8 7 36 36 H 1.09003 * 109.47554 * 60.12280 * 9 8 7 37 37 H 1.09007 * 109.68283 * 307.49741 * 10 8 7 38 38 H 1.09002 * 109.68326 * 68.05081 * 10 8 7 39 39 H 0.96998 * 120.00577 * 180.02562 * 15 14 12 40 40 H 1.09006 * 109.68282 * 189.78626 * 20 11 10 41 41 H 1.09005 * 109.68198 * 69.27128 * 20 11 10 42 42 H 1.08997 * 109.51621 * 172.20381 * 21 20 11 43 43 H 1.08999 * 109.51217 * 292.30900 * 21 20 11 44 44 H 1.08001 * 126.12019 * 359.97438 * 24 23 2 45 45 H 1.08003 * 126.03959 * 180.15747 * 25 24 23 46 46 H 1.08005 * 125.89508 * 179.76195 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2502 2.4544 7 6 2.1956 -0.9405 3.6505 8 6 1.6861 -0.2191 4.8999 9 6 2.0926 1.2547 4.8417 10 6 2.2924 -0.8684 6.1492 11 7 1.6469 -0.2850 7.3361 12 6 2.3924 0.2092 8.3729 13 1 1.9899 0.9871 9.0047 14 6 3.6656 -0.2897 8.6118 15 7 4.0361 -1.4327 8.0745 16 14 4.8530 0.6611 9.6959 17 1 4.2686 0.8172 11.0522 18 1 6.1364 -0.0797 9.7928 19 1 5.0980 2.0013 9.1052 20 6 0.1764 -0.2469 7.3749 21 6 -0.3268 0.3721 6.0660 22 8 0.2613 -0.3195 4.9616 23 7 2.0182 -0.6905 -1.1962 24 6 1.4430 -1.7591 -1.7866 25 6 2.1961 -2.0922 -2.8604 26 6 3.2736 -1.2026 -2.9229 27 7 3.1681 -0.3619 -1.9260 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.1489 0.5383 2.5436 32 1 3.2856 -0.9402 3.6504 33 1 1.8327 -1.9683 3.6507 34 1 1.7310 1.7669 5.7333 35 1 3.1790 1.3305 4.7947 36 1 1.6575 1.7170 3.9556 37 1 2.1151 -1.9438 6.1268 38 1 3.3643 -0.6733 6.1809 39 1 4.9257 -1.7815 8.2417 40 1 -0.1530 0.3598 8.2185 41 1 -0.2145 -1.2594 7.4763 42 1 -1.4120 0.2835 6.0148 43 1 -0.0453 1.4245 6.0291 44 1 0.5417 -2.2575 -1.4616 45 1 2.0020 -2.9044 -3.5453 46 1 4.0572 -1.2084 -3.6661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107759729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:18 Heat of formation + Delta-G solvation = 9.655231 kcal Electronic energy + Delta-G solvation = -28133.516608 eV Core-core repulsion = 24253.426358 eV Total energy + Delta-G solvation = -3880.090249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.26738 -41.11431 -40.20150 -36.60493 -36.00271 -35.62542 -33.26690 -33.11886 -31.03030 -30.39992 -29.57241 -28.12724 -27.45457 -25.55938 -24.98146 -23.17326 -22.31699 -21.97096 -20.99126 -20.28606 -19.06914 -18.72206 -18.15824 -17.39075 -16.97593 -16.76354 -16.31134 -16.13349 -15.78882 -15.57393 -15.33290 -15.22892 -14.99670 -14.70936 -14.45063 -14.39790 -14.11014 -13.69567 -13.51611 -13.41024 -13.27028 -13.18576 -12.93558 -12.77027 -12.61345 -12.54040 -12.45459 -12.20030 -11.96402 -11.86757 -11.64091 -11.29044 -11.10196 -10.76960 -10.50798 -10.35907 -10.24446 -9.51014 -8.72363 -7.91010 -5.38119 0.87936 1.38886 1.44950 1.46219 1.47257 1.54001 1.99270 2.12205 2.47026 2.76665 3.23473 3.41043 3.49050 3.60987 3.80626 3.90694 3.98533 4.00766 4.08535 4.15342 4.41623 4.46510 4.52909 4.58228 4.61715 4.64342 4.71287 4.73520 4.77407 4.88928 4.95018 5.03076 5.09313 5.11965 5.16916 5.20627 5.25456 5.35601 5.52330 5.60303 5.75425 6.05546 6.28207 6.35657 6.41270 6.77416 7.05571 7.06505 7.75488 8.29080 9.14360 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.002908 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.656761 B = 9626.255915 C =10376.426353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.146 3.854 3 H 0.143 0.857 4 C 0.497 3.503 5 O -0.577 6.577 6 N -0.695 5.695 7 C 0.151 3.849 8 C 0.096 3.904 9 C -0.155 4.155 10 C 0.167 3.833 11 N -0.607 5.607 12 C -0.259 4.259 13 H 0.074 0.926 14 C -0.050 4.050 15 N -0.937 5.937 16 Si 0.966 3.034 17 H -0.275 1.275 18 H -0.299 1.299 19 H -0.275 1.275 20 C 0.100 3.900 21 C 0.053 3.947 22 O -0.382 6.382 23 N -0.365 5.365 24 C 0.060 3.940 25 C -0.284 4.284 26 C 0.039 3.961 27 N -0.338 5.338 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.418 0.582 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.082 0.918 37 H -0.009 1.009 38 H 0.064 0.936 39 H 0.250 0.750 40 H 0.072 0.928 41 H 0.012 0.988 42 H 0.120 0.880 43 H 0.062 0.938 44 H 0.194 0.806 45 H 0.170 0.830 46 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.376 6.142 -18.804 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.160 0.840 4 C 0.282 3.718 5 O -0.456 6.456 6 N -0.348 5.348 7 C 0.026 3.974 8 C 0.055 3.945 9 C -0.212 4.212 10 C 0.041 3.959 11 N -0.331 5.331 12 C -0.389 4.389 13 H 0.092 0.908 14 C -0.246 4.246 15 N -0.583 5.583 16 Si 0.794 3.206 17 H -0.200 1.200 18 H -0.225 1.225 19 H -0.201 1.201 20 C -0.025 4.025 21 C -0.024 4.024 22 O -0.301 6.301 23 N -0.148 5.148 24 C -0.086 4.086 25 C -0.313 4.313 26 C -0.147 4.147 27 N -0.159 5.159 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.129 0.871 31 H 0.257 0.743 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.009 0.991 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.030 0.970 42 H 0.138 0.862 43 H 0.081 0.919 44 H 0.211 0.789 45 H 0.188 0.812 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.392 6.355 -18.241 21.934 hybrid contribution 0.827 -0.602 1.002 1.432 sum -9.565 5.753 -17.239 20.537 Atomic orbital electron populations 1.22211 0.87286 1.05049 1.06542 1.21301 0.98369 0.97396 0.78934 0.83993 1.21377 0.80117 0.84643 0.85681 1.90757 1.39378 1.28325 1.87163 1.45722 1.52906 1.32195 1.04002 1.21000 0.98178 0.95835 0.82379 1.22131 0.82247 0.96172 0.93958 1.22128 1.01569 0.94768 1.02736 1.21042 0.97481 0.92867 0.84548 1.44237 1.00789 1.71266 1.16804 1.19472 0.97586 1.13717 1.08106 0.90786 1.25804 1.01363 0.96438 1.00960 1.70169 1.19599 1.19094 1.49420 0.85364 0.78012 0.78168 0.79066 1.20035 1.22517 1.20053 1.21844 0.84277 0.98141 0.98243 1.23116 0.98328 0.95729 0.85235 1.87826 1.18830 1.75361 1.48117 1.48413 1.19533 1.25060 1.21753 1.22974 1.00729 0.90232 0.94657 1.21850 0.98998 1.06719 1.03739 1.24415 0.99802 0.93641 0.96877 1.77277 1.03391 1.26475 1.08760 0.88418 0.90849 0.87120 0.74324 0.91608 0.92450 0.91824 0.92906 0.89921 0.99091 0.91783 0.94138 0.90984 0.97041 0.86201 0.91936 0.78930 0.81246 0.77677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.74 71.98 0.63 -0.97 16 2 C 0.15 2.80 3.73 44.24 0.16 2.96 16 3 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 4 C 0.50 13.58 7.22 87.66 0.63 14.21 16 5 O -0.58 -22.10 16.41 -3.06 -0.05 -22.15 16 6 N -0.69 -17.27 5.09 -463.06 -2.36 -19.63 16 7 C 0.15 5.04 4.85 86.38 0.42 5.46 16 8 C 0.10 3.36 0.78 -10.70 -0.01 3.35 16 9 C -0.15 -4.72 7.86 71.98 0.57 -4.15 16 10 C 0.17 7.90 4.11 86.35 0.35 8.26 16 11 N -0.61 -29.12 2.57 -697.50 -1.79 -30.91 16 12 C -0.26 -13.61 9.65 84.03 0.81 -12.80 16 13 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 14 C -0.05 -2.74 4.95 84.86 0.42 -2.32 16 15 N -0.94 -55.13 11.14 21.65 0.24 -54.89 16 16 Si 0.97 43.95 29.58 68.60 2.03 45.98 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 C 0.10 3.87 6.73 86.35 0.58 4.45 16 21 C 0.05 1.56 6.60 72.08 0.48 2.03 16 22 O -0.38 -12.31 10.17 -148.98 -1.52 -13.83 16 23 N -0.37 -8.82 3.02 -331.07 -1.00 -9.82 16 24 C 0.06 1.23 10.57 83.54 0.88 2.12 16 25 C -0.28 -5.64 10.80 21.99 0.24 -5.41 16 26 C 0.04 0.86 12.02 85.24 1.02 1.89 16 27 N -0.34 -9.42 12.58 -57.02 -0.72 -10.14 16 28 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.81 7.16 -2.39 -0.02 0.79 16 30 H 0.11 0.75 7.56 -2.38 -0.02 0.73 16 31 H 0.42 7.62 6.42 -92.71 -0.60 7.03 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 2.12 6.12 -2.39 -0.01 2.11 16 35 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.08 1.83 6.59 -2.39 -0.02 1.81 16 37 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 38 H 0.06 3.42 6.16 -2.39 -0.01 3.41 16 39 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 40 H 0.07 2.59 7.96 -2.38 -0.02 2.57 16 41 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.06 1.71 6.26 -2.39 -0.01 1.70 16 44 H 0.19 2.78 7.27 -2.91 -0.02 2.76 16 45 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 46 H 0.21 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -77.15 369.43 2.43 -74.72 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.39 Total: 21.60 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 7.19 Total: 19.07 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -5.62 Total: -125.39 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -1.57 Total: -35.97 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -77.15 2.43 -74.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107759729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.374 kcal (2) G-P(sol) polarization free energy of solvation -77.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds