Wall clock time and date at job start Fri Apr 10 2020 18:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.47062 * 2 1 4 4 N 1.28452 * 125.19083 * 268.53681 * 3 2 1 5 5 C 1.30864 * 110.92135 * 180.28021 * 4 3 2 6 6 C 1.39668 * 107.86671 * 359.71601 * 5 4 3 7 7 C 1.36594 * 125.18895 * 88.32175 * 3 2 1 8 8 C 1.47166 * 126.88710 * 0.02562 * 7 3 2 9 9 O 1.21626 * 119.99510 * 4.45666 * 8 7 3 10 10 N 1.34769 * 120.00113 * 184.46385 * 8 7 3 11 11 C 1.46502 * 119.99675 * 175.33494 * 10 8 7 12 12 C 1.53003 * 109.46799 * 179.72164 * 11 10 8 13 13 C 1.52994 * 109.51429 * 304.99782 * 12 11 10 14 14 C 1.53302 * 109.51191 * 184.89667 * 12 11 10 15 15 N 1.47154 * 108.38461 * 187.77634 * 14 12 11 16 16 C 1.36939 * 120.98008 * 230.51177 * 15 14 12 17 17 H 1.08000 * 119.99740 * 146.30384 * 16 15 14 18 18 C 1.38813 * 119.99935 * 326.31106 * 16 15 14 19 19 N 1.31615 * 120.00144 * 348.29970 * 18 16 15 20 20 Si 1.86795 * 119.99734 * 168.30107 * 18 16 15 21 21 H 1.48502 * 109.47380 * 90.00043 * 20 18 16 22 22 H 1.48506 * 109.47209 * 209.99561 * 20 18 16 23 23 H 1.48505 * 109.47526 * 329.99711 * 20 18 16 24 24 C 1.47149 * 118.03662 * 50.53162 * 15 14 12 25 25 C 1.53294 * 108.38702 * 309.46860 * 24 15 14 26 26 O 1.42954 * 109.26355 * 52.27609 * 25 24 15 27 27 H 1.08996 * 109.47225 * 59.99817 * 1 2 3 28 28 H 1.09004 * 109.46932 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47048 * 299.99532 * 1 2 3 30 30 H 1.09001 * 109.46823 * 239.99964 * 2 1 3 31 31 H 1.08996 * 109.47225 * 120.00183 * 2 1 3 32 32 H 1.07996 * 126.06338 * 179.67734 * 5 4 3 33 33 H 1.07999 * 127.32343 * 179.97438 * 6 5 4 34 34 H 0.96997 * 120.00279 * 355.05401 * 10 8 7 35 35 H 1.08996 * 109.46933 * 299.71598 * 11 10 8 36 36 H 1.08993 * 109.47582 * 59.72688 * 11 10 8 37 37 H 1.08999 * 109.47518 * 60.00445 * 13 12 11 38 38 H 1.09000 * 109.47298 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.47130 * 299.99908 * 13 12 11 40 40 H 1.09001 * 109.68220 * 307.49409 * 14 12 11 41 41 H 1.08996 * 109.68039 * 68.01566 * 14 12 11 42 42 H 0.96994 * 119.99941 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.67916 * 69.19037 * 24 15 14 44 44 H 1.09002 * 109.67946 * 189.73829 * 24 15 14 45 45 H 1.09004 * 109.50977 * 172.22761 * 25 24 15 46 46 H 1.09000 * 109.51155 * 292.32775 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2904 2.0702 -1.0494 5 6 2.7110 3.2667 -0.7268 6 6 2.7045 3.3619 0.6666 7 6 2.2499 2.1342 1.1158 8 6 2.0608 1.7207 2.5155 9 8 1.7359 0.5773 2.7731 10 7 2.2474 2.6090 3.5117 11 6 1.9606 2.2272 4.8967 12 6 2.2611 3.4070 5.8235 13 6 3.7017 3.8739 5.6058 14 6 2.0788 2.9716 7.2821 15 7 2.1886 4.1628 8.1391 16 6 3.0224 4.1752 9.2253 17 1 3.5198 5.0893 9.5138 18 6 3.2282 3.0127 9.9555 19 7 2.4582 1.9644 9.7548 20 14 4.5983 2.9363 11.2230 21 1 4.0775 3.3770 12.5420 22 1 5.0975 1.5417 11.3289 23 1 5.7091 3.8293 10.8058 24 6 1.3757 5.3400 7.7947 25 6 1.5922 5.6599 6.3112 26 8 1.3624 4.4810 5.5361 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.0106 4.0425 -1.4158 33 1 2.9931 4.2126 1.2661 34 1 2.5755 3.4997 3.3121 35 1 0.9098 1.9523 4.9876 36 1 2.5840 1.3779 5.1761 37 1 3.8301 4.1850 4.5691 38 1 3.9151 4.7140 6.2667 39 1 4.3863 3.0551 5.8270 40 1 1.0963 2.5171 7.4095 41 1 2.8533 2.2531 7.5502 42 1 2.6018 1.1522 10.2653 43 1 0.3224 5.1239 7.9737 44 1 1.6849 6.1902 8.4026 45 1 0.8970 6.4404 6.0019 46 1 2.6156 6.0024 6.1583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107893768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:08 Heat of formation + Delta-G solvation = 23.733148 kcal Electronic energy + Delta-G solvation = -28198.178456 eV Core-core repulsion = 24318.698671 eV Total energy + Delta-G solvation = -3879.479785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.64783 -39.69796 -38.67491 -35.28560 -34.55629 -34.27852 -32.12881 -31.30986 -30.68167 -29.90926 -27.99733 -26.62763 -25.74080 -24.21198 -23.28609 -22.92508 -21.69975 -20.92340 -19.99964 -18.80682 -18.08414 -17.01266 -16.42225 -16.08653 -15.74866 -15.47304 -15.19177 -14.82083 -14.56110 -14.47729 -14.23996 -14.00924 -13.92969 -13.54614 -13.22395 -13.01262 -12.81100 -12.76992 -12.52697 -12.26995 -11.97697 -11.64514 -11.48769 -11.22517 -11.03786 -10.95354 -10.86397 -10.72058 -10.36305 -10.31336 -10.15552 -10.00282 -9.56850 -9.38114 -9.19224 -9.06020 -8.90864 -8.59356 -6.67638 -5.89097 -3.40431 1.18077 2.24634 2.48936 3.18067 3.24555 3.31015 3.38151 3.39058 4.18874 4.35895 4.39459 4.56900 4.77534 4.85399 5.01268 5.07099 5.10342 5.29796 5.39545 5.41258 5.41949 5.48598 5.57500 5.62116 5.66698 5.86431 5.88554 5.89710 5.94825 6.01782 6.09809 6.25408 6.33051 6.38936 6.49164 6.59811 6.61831 6.70975 6.80029 7.00026 7.38929 7.47322 7.69184 7.82814 7.92438 8.14522 8.34049 9.07698 9.68373 10.29886 11.18808 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.002981 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.619849 B = 9390.260308 C = 9873.291852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.111 3.889 3 N -0.255 5.255 4 N -0.281 5.281 5 C -0.006 4.006 6 C -0.191 4.191 7 C -0.032 4.032 8 C 0.585 3.415 9 O -0.544 6.544 10 N -0.699 5.699 11 C 0.141 3.859 12 C 0.077 3.923 13 C -0.163 4.163 14 C 0.164 3.836 15 N -0.589 5.589 16 C -0.260 4.260 17 H 0.064 0.936 18 C 0.011 3.989 19 N -0.899 5.899 20 Si 0.903 3.097 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.384 6.384 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.185 0.815 33 H 0.160 0.840 34 H 0.405 0.595 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.032 0.968 41 H 0.087 0.913 42 H 0.256 0.744 43 H 0.026 0.974 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.274 1.792 -18.100 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.043 5.043 4 N -0.114 5.114 5 C -0.181 4.181 6 C -0.220 4.220 7 C -0.160 4.160 8 C 0.370 3.630 9 O -0.422 6.422 10 N -0.351 5.351 11 C 0.017 3.983 12 C 0.036 3.964 13 C -0.220 4.220 14 C 0.038 3.962 15 N -0.313 5.313 16 C -0.389 4.389 17 H 0.082 0.918 18 C -0.189 4.189 19 N -0.542 5.542 20 Si 0.733 3.267 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.203 1.203 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.303 6.303 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.202 0.798 33 H 0.177 0.823 34 H 0.241 0.759 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.043 0.957 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.936 -0.052 -18.823 18.846 hybrid contribution 1.149 0.983 1.512 2.138 sum 0.213 0.930 -17.311 17.337 Atomic orbital electron populations 1.22084 0.93460 1.03548 1.03058 1.22204 0.96231 0.76565 1.05834 1.45855 1.44500 1.12313 1.01652 1.73187 1.17844 1.06458 1.13912 1.23542 1.04742 0.94877 0.94957 1.22274 1.06904 0.97176 0.95654 1.21495 1.10868 0.93751 0.89914 1.16917 0.77814 0.85199 0.83042 1.90778 1.48548 1.18556 1.84339 1.45725 1.66297 1.16238 1.06819 1.21441 1.02245 0.96624 0.77954 1.22559 0.89139 0.86813 0.97863 1.22215 0.96489 1.03223 1.00100 1.21198 1.01148 0.90231 0.83651 1.43896 1.47590 1.10735 1.29030 1.19073 1.19238 0.96544 1.04087 0.91797 1.25249 0.98498 0.97652 0.97520 1.69970 1.37782 1.03744 1.42705 0.86300 0.81820 0.77055 0.81572 1.21219 1.21454 1.20347 1.21621 0.95007 0.91971 0.93132 1.23049 1.00074 0.86783 0.93299 1.87823 1.56611 1.23292 1.62599 0.92014 0.90049 0.91489 0.88484 0.86413 0.79771 0.82256 0.75861 0.90494 0.89592 0.93943 0.90671 0.91782 0.95034 0.89431 0.93364 0.95653 0.92014 0.90147 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 10.24 37.16 0.38 -1.17 16 2 C 0.11 1.16 6.52 -4.04 -0.03 1.14 16 3 N -0.25 -3.21 3.35 -57.14 -0.19 -3.40 16 4 N -0.28 -3.50 11.90 30.59 0.36 -3.13 16 5 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 6 C -0.19 -2.07 10.50 -38.98 -0.41 -2.48 16 7 C -0.03 -0.41 6.96 -82.06 -0.57 -0.98 16 8 C 0.59 8.57 7.79 -12.64 -0.10 8.47 16 9 O -0.54 -9.17 14.71 5.25 0.08 -9.09 16 10 N -0.70 -9.72 5.18 -61.47 -0.32 -10.04 16 11 C 0.14 2.28 4.85 -4.04 -0.02 2.26 16 12 C 0.08 1.37 0.78 -90.47 -0.07 1.30 16 13 C -0.16 -2.63 7.86 37.15 0.29 -2.34 16 14 C 0.16 3.69 4.04 -3.53 -0.01 3.68 16 15 N -0.59 -13.97 2.53 -171.82 -0.44 -14.41 16 16 C -0.26 -6.77 9.59 -15.06 -0.14 -6.91 16 17 H 0.06 1.64 7.86 -52.49 -0.41 1.22 16 18 C 0.01 0.29 5.02 -17.43 -0.09 0.20 16 19 N -0.90 -25.16 11.39 55.49 0.63 -24.53 16 20 Si 0.90 20.87 29.57 -169.99 -5.03 15.85 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.11 2.18 6.74 -3.54 -0.02 2.16 16 25 C 0.05 0.76 6.60 37.31 0.25 1.01 16 26 O -0.38 -6.79 10.17 -35.23 -0.36 -7.15 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.12 1.34 6.32 -51.93 -0.33 1.01 16 32 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.16 1.33 7.58 -52.49 -0.40 0.93 16 34 H 0.41 4.95 6.02 -40.82 -0.25 4.70 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.04 0.56 6.58 -51.93 -0.34 0.22 16 38 H 0.07 1.34 6.12 -51.93 -0.32 1.02 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 2.17 6.56 -51.93 -0.34 1.83 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.05 0.77 6.26 -51.93 -0.33 0.45 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -30.98 368.68 -7.36 -38.34 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.91 Total: 5.96 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -0.76 Total: 6.05 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.05 Total: -55.51 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.28 Total: -16.24 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.98 -7.36 -38.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107893768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.077 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds