Wall clock time and date at job start Fri Apr 10 2020 18:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.47062 * 2 1 4 4 N 1.28452 * 125.19083 * 268.53681 * 3 2 1 5 5 C 1.30864 * 110.92135 * 180.28021 * 4 3 2 6 6 C 1.39668 * 107.86671 * 359.71601 * 5 4 3 7 7 C 1.36594 * 125.18895 * 88.32175 * 3 2 1 8 8 C 1.47166 * 126.88710 * 0.02562 * 7 3 2 9 9 O 1.21626 * 119.99510 * 4.45666 * 8 7 3 10 10 N 1.34769 * 120.00113 * 184.46385 * 8 7 3 11 11 C 1.46502 * 119.99675 * 175.33494 * 10 8 7 12 12 C 1.53003 * 109.46799 * 179.72164 * 11 10 8 13 13 C 1.52994 * 109.51429 * 304.99782 * 12 11 10 14 14 C 1.53302 * 109.51191 * 184.89667 * 12 11 10 15 15 N 1.47154 * 108.38461 * 187.77634 * 14 12 11 16 16 C 1.36939 * 120.98008 * 230.51177 * 15 14 12 17 17 H 1.08000 * 119.99740 * 146.30384 * 16 15 14 18 18 C 1.38813 * 119.99935 * 326.31106 * 16 15 14 19 19 N 1.31615 * 120.00144 * 348.29970 * 18 16 15 20 20 Si 1.86795 * 119.99734 * 168.30107 * 18 16 15 21 21 H 1.48502 * 109.47380 * 90.00043 * 20 18 16 22 22 H 1.48506 * 109.47209 * 209.99561 * 20 18 16 23 23 H 1.48505 * 109.47526 * 329.99711 * 20 18 16 24 24 C 1.47149 * 118.03662 * 50.53162 * 15 14 12 25 25 C 1.53294 * 108.38702 * 309.46860 * 24 15 14 26 26 O 1.42954 * 109.26355 * 52.27609 * 25 24 15 27 27 H 1.08996 * 109.47225 * 59.99817 * 1 2 3 28 28 H 1.09004 * 109.46932 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47048 * 299.99532 * 1 2 3 30 30 H 1.09001 * 109.46823 * 239.99964 * 2 1 3 31 31 H 1.08996 * 109.47225 * 120.00183 * 2 1 3 32 32 H 1.07996 * 126.06338 * 179.67734 * 5 4 3 33 33 H 1.07999 * 127.32343 * 179.97438 * 6 5 4 34 34 H 0.96997 * 120.00279 * 355.05401 * 10 8 7 35 35 H 1.08996 * 109.46933 * 299.71598 * 11 10 8 36 36 H 1.08993 * 109.47582 * 59.72688 * 11 10 8 37 37 H 1.08999 * 109.47518 * 60.00445 * 13 12 11 38 38 H 1.09000 * 109.47298 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.47130 * 299.99908 * 13 12 11 40 40 H 1.09001 * 109.68220 * 307.49409 * 14 12 11 41 41 H 1.08996 * 109.68039 * 68.01566 * 14 12 11 42 42 H 0.96994 * 119.99941 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.67916 * 69.19037 * 24 15 14 44 44 H 1.09002 * 109.67946 * 189.73829 * 24 15 14 45 45 H 1.09004 * 109.50977 * 172.22761 * 25 24 15 46 46 H 1.09000 * 109.51155 * 292.32775 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2904 2.0702 -1.0494 5 6 2.7110 3.2667 -0.7268 6 6 2.7045 3.3619 0.6666 7 6 2.2499 2.1342 1.1158 8 6 2.0608 1.7207 2.5155 9 8 1.7359 0.5773 2.7731 10 7 2.2474 2.6090 3.5117 11 6 1.9606 2.2272 4.8967 12 6 2.2611 3.4070 5.8235 13 6 3.7017 3.8739 5.6058 14 6 2.0788 2.9716 7.2821 15 7 2.1886 4.1628 8.1391 16 6 3.0224 4.1752 9.2253 17 1 3.5198 5.0893 9.5138 18 6 3.2282 3.0127 9.9555 19 7 2.4582 1.9644 9.7548 20 14 4.5983 2.9363 11.2230 21 1 4.0775 3.3770 12.5420 22 1 5.0975 1.5417 11.3289 23 1 5.7091 3.8293 10.8058 24 6 1.3757 5.3400 7.7947 25 6 1.5922 5.6599 6.3112 26 8 1.3624 4.4810 5.5361 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.0106 4.0425 -1.4158 33 1 2.9931 4.2126 1.2661 34 1 2.5755 3.4997 3.3121 35 1 0.9098 1.9523 4.9876 36 1 2.5840 1.3779 5.1761 37 1 3.8301 4.1850 4.5691 38 1 3.9151 4.7140 6.2667 39 1 4.3863 3.0551 5.8270 40 1 1.0963 2.5171 7.4095 41 1 2.8533 2.2531 7.5502 42 1 2.6018 1.1522 10.2653 43 1 0.3224 5.1239 7.9737 44 1 1.6849 6.1902 8.4026 45 1 0.8970 6.4404 6.0019 46 1 2.6156 6.0024 6.1583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107893768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:07 Heat of formation + Delta-G solvation = 2.901949 kcal Electronic energy + Delta-G solvation = -28199.081765 eV Core-core repulsion = 24318.698671 eV Total energy + Delta-G solvation = -3880.383094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.52248 -41.04605 -40.02059 -36.62660 -36.06296 -35.34434 -33.42854 -33.21274 -31.72594 -30.72303 -29.56032 -28.08402 -27.37601 -25.12147 -24.94938 -24.00335 -22.94653 -22.14346 -21.07519 -20.25564 -19.17339 -18.81973 -17.49993 -17.40431 -16.90683 -16.82224 -16.58385 -16.11911 -15.80814 -15.65379 -15.59321 -15.41248 -15.17990 -14.74333 -14.70921 -14.50296 -14.01316 -13.91621 -13.53107 -13.43860 -13.16891 -13.01944 -12.90825 -12.76858 -12.53384 -12.43400 -12.30027 -12.16047 -11.95566 -11.87707 -11.83051 -11.25773 -11.05937 -10.70543 -10.51500 -10.40995 -10.08416 -9.98540 -8.60835 -7.89345 -5.44359 0.21151 1.35055 1.46529 1.48050 1.56983 1.66712 2.11302 2.16799 2.48078 2.79812 3.26576 3.50542 3.53807 3.57942 3.93341 3.99782 4.02799 4.09740 4.11257 4.20606 4.30250 4.44480 4.48645 4.56709 4.57874 4.64715 4.68415 4.74213 4.79626 4.84422 4.89188 4.98327 5.05303 5.08303 5.14195 5.21898 5.26767 5.37486 5.53793 5.56067 5.63201 5.75797 6.34251 6.36660 6.39494 6.99502 7.09457 7.10407 7.75781 8.33818 9.15774 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.002981 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.619849 B = 9390.260308 C = 9873.291852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.107 3.893 3 N -0.264 5.264 4 N -0.297 5.297 5 C -0.005 4.005 6 C -0.178 4.178 7 C -0.059 4.059 8 C 0.586 3.414 9 O -0.573 6.573 10 N -0.688 5.688 11 C 0.152 3.848 12 C 0.093 3.907 13 C -0.155 4.155 14 C 0.173 3.827 15 N -0.606 5.606 16 C -0.263 4.263 17 H 0.070 0.930 18 C -0.043 4.043 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.265 1.265 24 C 0.102 3.898 25 C 0.053 3.947 26 O -0.385 6.385 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.041 0.959 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.220 0.780 33 H 0.188 0.812 34 H 0.416 0.584 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.057 0.943 40 H -0.005 1.005 41 H 0.058 0.942 42 H 0.251 0.749 43 H 0.010 0.990 44 H 0.071 0.929 45 H 0.117 0.883 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.851 3.964 -20.162 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.013 4.013 3 N -0.053 5.053 4 N -0.130 5.130 5 C -0.180 4.180 6 C -0.207 4.207 7 C -0.187 4.187 8 C 0.373 3.627 9 O -0.454 6.454 10 N -0.340 5.340 11 C 0.027 3.973 12 C 0.052 3.948 13 C -0.212 4.212 14 C 0.046 3.954 15 N -0.330 5.330 16 C -0.394 4.394 17 H 0.087 0.913 18 C -0.239 4.239 19 N -0.579 5.579 20 Si 0.794 3.206 21 H -0.213 1.213 22 H -0.221 1.221 23 H -0.190 1.190 24 C -0.023 4.023 25 C -0.024 4.024 26 O -0.304 6.304 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.060 0.940 30 H 0.135 0.865 31 H 0.122 0.878 32 H 0.236 0.764 33 H 0.205 0.795 34 H 0.255 0.745 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.013 0.987 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.028 0.972 44 H 0.089 0.911 45 H 0.135 0.865 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.193 2.170 -20.909 21.022 hybrid contribution 0.740 0.370 2.129 2.284 sum 0.933 2.540 -18.780 18.974 Atomic orbital electron populations 1.22025 0.92937 1.04533 1.01838 1.22299 0.96658 0.76218 1.06087 1.46043 1.44878 1.12825 1.01556 1.73188 1.18325 1.07430 1.14054 1.24188 1.03463 0.94836 0.95482 1.22686 1.05017 0.96822 0.96151 1.21411 1.13063 0.95129 0.89076 1.17157 0.77003 0.84707 0.83857 1.90765 1.49814 1.19879 1.84901 1.45471 1.66300 1.16706 1.05560 1.21107 1.01177 0.95783 0.79216 1.22190 0.90564 0.87316 0.94705 1.22129 0.94600 1.02415 1.02074 1.20954 0.98010 0.89569 0.86870 1.44150 1.48031 1.11817 1.29012 1.19414 1.19081 0.96563 1.04293 0.91289 1.25985 1.00743 0.97537 0.99663 1.70138 1.39631 1.04139 1.43975 0.85307 0.79511 0.76670 0.79127 1.21261 1.22106 1.18997 1.21827 0.93546 0.90824 0.96143 1.23108 1.02057 0.86928 0.90345 1.87837 1.56764 1.23488 1.62345 0.91710 0.88049 0.93963 0.86477 0.87845 0.76368 0.79515 0.74528 0.92036 0.90400 0.90253 0.91901 0.92424 0.98728 0.92373 0.94022 0.97188 0.91093 0.86525 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 10.24 71.98 0.74 -2.16 16 2 C 0.11 2.18 6.52 86.38 0.56 2.74 16 3 N -0.26 -6.35 3.35 -334.68 -1.12 -7.47 16 4 N -0.30 -6.76 11.90 -57.15 -0.68 -7.44 16 5 C 0.00 -0.08 12.03 85.18 1.02 0.94 16 6 C -0.18 -3.29 10.50 22.66 0.24 -3.05 16 7 C -0.06 -1.44 6.96 40.79 0.28 -1.16 16 8 C 0.59 16.86 7.79 86.59 0.67 17.53 16 9 O -0.57 -19.77 14.71 -4.11 -0.06 -19.83 16 10 N -0.69 -18.26 5.18 -466.64 -2.42 -20.67 16 11 C 0.15 4.95 4.85 86.38 0.42 5.37 16 12 C 0.09 3.26 0.78 -10.69 -0.01 3.25 16 13 C -0.15 -4.71 7.86 71.98 0.57 -4.14 16 14 C 0.17 8.04 4.04 86.36 0.35 8.39 16 15 N -0.61 -29.08 2.53 -697.53 -1.77 -30.85 16 16 C -0.26 -13.81 9.59 84.03 0.81 -13.00 16 17 H 0.07 3.49 7.86 -2.91 -0.02 3.46 16 18 C -0.04 -2.33 5.02 84.86 0.43 -1.90 16 19 N -0.93 -54.28 11.39 21.65 0.25 -54.03 16 20 Si 0.97 43.44 29.57 68.60 2.03 45.47 16 21 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 C 0.10 4.01 6.74 86.35 0.58 4.59 16 25 C 0.05 1.61 6.60 72.08 0.48 2.09 16 26 O -0.38 -12.90 10.17 -148.98 -1.52 -14.42 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.10 2.41 6.32 -2.39 -0.02 2.40 16 32 H 0.22 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.19 2.25 7.58 -2.91 -0.02 2.23 16 34 H 0.42 8.95 6.02 -92.71 -0.56 8.39 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.08 2.67 8.14 -2.39 -0.02 2.66 16 37 H 0.08 1.82 6.58 -2.39 -0.02 1.80 16 38 H 0.06 2.10 6.12 -2.39 -0.01 2.08 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 40 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.06 3.02 6.56 -2.39 -0.02 3.01 16 42 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.07 2.62 7.96 -2.39 -0.02 2.60 16 45 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 46 H 0.06 1.78 6.26 -2.39 -0.01 1.76 16 Total: -1.00 -69.27 368.68 2.28 -66.99 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.43 Total: 22.75 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 7.14 Total: 19.50 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -5.74 Total: -120.46 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -1.58 Total: -34.25 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -69.27 2.28 -66.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107893768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.887 kcal (2) G-P(sol) polarization free energy of solvation -69.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds