Wall clock time and date at job start Fri Apr 10 2020 18:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46903 * 2 1 4 4 C 1.35403 * 126.44435 * 265.02641 * 3 2 1 5 5 C 1.35555 * 107.16483 * 179.97438 * 4 3 2 6 6 N 1.33106 * 108.34902 * 359.97438 * 5 4 3 7 7 C 1.31621 * 109.09393 * 359.76430 * 6 5 4 8 8 C 1.47404 * 125.86279 * 180.22780 * 7 6 5 9 9 O 1.21603 * 119.99907 * 180.17617 * 8 7 6 10 10 N 1.34774 * 120.00142 * 0.17875 * 8 7 6 11 11 C 1.46505 * 120.00159 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46930 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.51663 * 60.00030 * 12 11 10 14 14 C 1.53303 * 109.50658 * 180.09653 * 12 11 10 15 15 N 1.47155 * 108.38045 * 172.22574 * 14 12 11 16 16 C 1.36932 * 120.98237 * 129.44771 * 15 14 12 17 17 H 1.08006 * 119.99822 * 206.23445 * 16 15 14 18 18 C 1.38808 * 120.00405 * 26.22784 * 16 15 14 19 19 N 1.31625 * 119.99767 * 16.92713 * 18 16 15 20 20 Si 1.86796 * 120.00638 * 196.92752 * 18 16 15 21 21 H 1.48498 * 109.46854 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47461 * 119.99658 * 20 18 16 23 23 H 1.48498 * 109.47547 * 240.00146 * 20 18 16 24 24 C 1.47149 * 118.03452 * 309.46463 * 15 14 12 25 25 C 1.53299 * 108.38726 * 50.53711 * 24 15 14 26 26 O 1.42952 * 109.26339 * 307.72138 * 25 24 15 27 27 H 1.09001 * 109.47500 * 59.99260 * 1 2 3 28 28 H 1.08996 * 109.46919 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46630 * 299.99751 * 1 2 3 30 30 H 1.08998 * 109.47637 * 119.99982 * 2 1 3 31 31 H 1.09004 * 109.47056 * 240.00574 * 2 1 3 32 32 H 1.08006 * 126.41619 * 359.92847 * 4 3 2 33 33 H 1.07992 * 125.82910 * 179.97438 * 5 4 3 34 34 H 0.97000 * 120.00196 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.46318 * 299.99162 * 11 10 8 36 36 H 1.08994 * 109.47144 * 59.99009 * 11 10 8 37 37 H 1.08997 * 109.47344 * 59.99277 * 13 12 11 38 38 H 1.08995 * 109.47252 * 179.97438 * 13 12 11 39 39 H 1.09004 * 109.46603 * 299.99964 * 13 12 11 40 40 H 1.08996 * 109.68441 * 291.94495 * 14 12 11 41 41 H 1.08993 * 109.68203 * 52.47023 * 14 12 11 42 42 H 0.97000 * 120.00260 * 180.02562 * 19 18 16 43 43 H 1.09008 * 109.68030 * 170.26191 * 24 15 14 44 44 H 1.09004 * 109.68423 * 290.81261 * 24 15 14 45 45 H 1.08999 * 109.51231 * 67.62229 * 25 24 15 46 46 H 1.09000 * 109.51161 * 187.72069 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3754 2.1082 -1.0851 5 6 2.7648 3.3277 -0.6393 6 7 2.6479 3.3460 0.6865 7 6 2.1927 2.1805 1.0948 8 6 1.9217 1.8010 2.4931 9 8 1.5035 0.6887 2.7511 10 7 2.1372 2.6869 3.4857 11 6 1.8684 2.3095 4.8756 12 6 2.1947 3.4873 5.7960 13 6 1.3258 4.6882 5.4170 14 6 1.9159 3.0926 7.2509 15 7 2.4111 4.1668 8.1262 16 6 1.6139 4.7065 9.1000 17 1 1.7849 5.7176 9.4389 18 6 0.5859 3.9542 9.6514 19 7 0.5731 2.6467 9.5003 20 14 -0.7793 4.7971 10.6079 21 1 -0.5349 6.2617 10.6326 22 1 -2.0839 4.5245 9.9530 23 1 -0.8047 4.2756 11.9981 24 6 3.7883 4.6442 7.9239 25 6 3.9758 4.9633 6.4362 26 8 3.5747 3.8336 5.6574 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 2.3547 1.7779 -2.1132 33 1 3.1107 4.1449 -1.2547 34 1 2.4711 3.5741 3.2800 35 1 0.8165 2.0445 4.9830 36 1 2.4879 1.4546 5.1463 37 1 0.2738 4.4240 5.5246 38 1 1.5585 5.5267 6.0734 39 1 1.5258 4.9694 4.3830 40 1 0.8434 2.9647 7.3975 41 1 2.4319 2.1612 7.4839 42 1 -0.1454 2.1209 9.8853 43 1 3.9557 5.5438 8.5163 44 1 4.4934 3.8693 8.2248 45 1 3.3640 5.8248 6.1688 46 1 5.0246 5.1870 6.2413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107905292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:14 Heat of formation + Delta-G solvation = 10.354650 kcal Electronic energy + Delta-G solvation = -28223.938694 eV Core-core repulsion = 24343.878774 eV Total energy + Delta-G solvation = -3880.059920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.41037 -39.57747 -38.58580 -35.50871 -34.73527 -34.27168 -31.86688 -31.24356 -30.53839 -29.73586 -27.91503 -26.52518 -25.71674 -24.21438 -23.22122 -22.81676 -21.59138 -20.99153 -19.97305 -18.69115 -17.91657 -17.00303 -16.44236 -15.99205 -15.87708 -15.41301 -15.06147 -14.77049 -14.54933 -14.36377 -14.00178 -13.98872 -13.89580 -13.65929 -13.46356 -13.01105 -12.91871 -12.74995 -12.46642 -12.31164 -11.90338 -11.59575 -11.53776 -11.16782 -11.01162 -10.82175 -10.64848 -10.35811 -10.28861 -10.21966 -10.17334 -9.97800 -9.91674 -9.51209 -9.04878 -8.95584 -8.61346 -8.53141 -6.73219 -5.84137 -3.27155 1.29959 2.31206 2.52111 3.31917 3.35244 3.42370 3.43620 3.43964 4.24683 4.34219 4.40789 4.44358 4.64009 4.73444 4.99504 5.09827 5.15889 5.23133 5.34839 5.38544 5.48447 5.49462 5.54219 5.73316 5.83404 5.95724 5.97675 6.00031 6.04896 6.10721 6.17833 6.32352 6.43513 6.48451 6.57664 6.68027 6.75226 6.78904 6.85883 7.08567 7.46168 7.48811 7.71995 7.81734 7.91386 8.23575 8.33578 9.11401 9.74556 10.31804 11.23862 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.003094 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.364911 B = 9048.978901 C = 9790.601900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.414 5.414 4 C -0.035 4.035 5 C -0.029 4.029 6 N -0.446 5.446 7 C 0.147 3.853 8 C 0.600 3.400 9 O -0.545 6.545 10 N -0.689 5.689 11 C 0.140 3.860 12 C 0.078 3.922 13 C -0.164 4.164 14 C 0.161 3.839 15 N -0.591 5.591 16 C -0.252 4.252 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.290 1.290 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.383 6.383 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.181 0.819 33 H 0.176 0.824 34 H 0.414 0.586 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.097 0.903 41 H 0.030 0.970 42 H 0.255 0.745 43 H 0.061 0.939 44 H 0.026 0.974 45 H 0.049 0.951 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.562 -1.824 -20.986 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.095 5.095 4 C -0.173 4.173 5 C -0.183 4.183 6 N -0.167 5.167 7 C -0.113 4.113 8 C 0.384 3.616 9 O -0.423 6.423 10 N -0.339 5.339 11 C 0.017 3.983 12 C 0.037 3.963 13 C -0.221 4.221 14 C 0.034 3.966 15 N -0.314 5.314 16 C -0.381 4.381 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.217 1.217 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.302 6.302 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.198 0.802 33 H 0.193 0.807 34 H 0.252 0.748 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.115 0.885 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.067 0.933 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.379 -2.356 -20.196 20.472 hybrid contribution -0.842 0.273 -0.089 0.889 sum 1.537 -2.083 -20.284 20.449 Atomic orbital electron populations 1.22068 0.93513 1.03432 1.03059 1.22129 0.96390 0.78779 1.05305 1.45296 1.45190 1.12839 1.06156 1.22883 1.07301 0.94108 0.93027 1.22418 1.07309 0.97467 0.91067 1.70239 1.15131 1.18784 1.12558 1.22764 1.09716 0.88394 0.90427 1.16468 0.78473 0.84704 0.81967 1.90792 1.47255 1.20691 1.83568 1.45679 1.64885 1.17175 1.06194 1.21473 1.01698 0.97352 0.77792 1.22550 0.82170 0.93418 0.98154 1.22220 1.00154 0.99582 1.00144 1.21286 1.01786 0.90205 0.83340 1.44002 1.08180 1.42679 1.36576 1.19203 1.09747 0.95527 1.13656 0.91365 1.25034 1.00958 0.94993 0.98606 1.70027 1.32844 1.03703 1.48017 0.86224 0.82207 0.78990 0.79372 1.20246 1.21483 1.21683 1.21607 0.88235 0.98198 0.93676 1.23037 0.98687 0.88475 0.92969 1.87822 1.25515 1.49401 1.67511 0.92397 0.90326 0.91136 0.87092 0.89114 0.80225 0.80652 0.74846 0.89695 0.90465 0.91914 0.90750 0.93626 0.88519 0.95237 0.93518 0.92030 0.95645 0.93308 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 10.22 37.16 0.38 -1.01 16 2 C 0.10 0.86 6.17 -4.04 -0.02 0.83 16 3 N -0.41 -4.66 2.76 -114.58 -0.32 -4.98 16 4 C -0.03 -0.32 11.53 -16.93 -0.20 -0.51 16 5 C -0.03 -0.31 11.85 -17.96 -0.21 -0.53 16 6 N -0.45 -6.27 10.90 -11.26 -0.12 -6.39 16 7 C 0.15 2.10 7.78 -154.52 -1.20 0.89 16 8 C 0.60 9.60 7.81 -12.53 -0.10 9.50 16 9 O -0.55 -9.46 14.47 5.28 0.08 -9.38 16 10 N -0.69 -10.98 5.15 -61.39 -0.32 -11.30 16 11 C 0.14 2.44 4.82 -4.04 -0.02 2.42 16 12 C 0.08 1.48 0.76 -90.46 -0.07 1.41 16 13 C -0.16 -2.90 7.92 37.16 0.29 -2.61 16 14 C 0.16 3.74 4.12 -3.53 -0.01 3.72 16 15 N -0.59 -14.42 2.57 -171.82 -0.44 -14.86 16 16 C -0.25 -6.70 9.65 -15.06 -0.15 -6.85 16 17 H 0.07 1.78 7.88 -52.48 -0.41 1.37 16 18 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 19 N -0.90 -25.56 11.14 55.49 0.62 -24.94 16 20 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.11 2.26 6.74 -3.53 -0.02 2.24 16 25 C 0.05 0.82 6.60 37.31 0.25 1.07 16 26 O -0.38 -7.29 9.98 -35.23 -0.35 -7.64 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.80 7.81 -51.93 -0.41 0.39 16 30 H 0.11 1.19 6.65 -51.93 -0.35 0.84 16 31 H 0.09 0.53 8.13 -51.93 -0.42 0.10 16 32 H 0.18 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.41 6.48 6.88 -40.82 -0.28 6.20 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.07 1.43 6.12 -51.93 -0.32 1.11 16 39 H 0.04 0.71 6.87 -51.93 -0.36 0.36 16 40 H 0.10 2.47 6.13 -51.93 -0.32 2.16 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.06 1.21 7.96 -51.92 -0.41 0.79 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.84 6.26 -51.93 -0.32 0.52 16 46 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -31.63 369.01 -8.45 -40.08 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.96 Total: 7.04 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -1.17 Total: 10.57 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.58 Total: -62.46 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.28 Total: -17.02 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.63 -8.45 -40.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107905292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.435 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds