Wall clock time and date at job start Fri Apr 10 2020 18:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46903 * 2 1 4 4 C 1.35403 * 126.44435 * 265.02641 * 3 2 1 5 5 C 1.35555 * 107.16483 * 179.97438 * 4 3 2 6 6 N 1.33106 * 108.34902 * 359.97438 * 5 4 3 7 7 C 1.31621 * 109.09393 * 359.76430 * 6 5 4 8 8 C 1.47404 * 125.86279 * 180.22780 * 7 6 5 9 9 O 1.21603 * 119.99907 * 180.17617 * 8 7 6 10 10 N 1.34774 * 120.00142 * 0.17875 * 8 7 6 11 11 C 1.46505 * 120.00159 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46930 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.51663 * 60.00030 * 12 11 10 14 14 C 1.53303 * 109.50658 * 180.09653 * 12 11 10 15 15 N 1.47155 * 108.38045 * 172.22574 * 14 12 11 16 16 C 1.36932 * 120.98237 * 129.44771 * 15 14 12 17 17 H 1.08006 * 119.99822 * 206.23445 * 16 15 14 18 18 C 1.38808 * 120.00405 * 26.22784 * 16 15 14 19 19 N 1.31625 * 119.99767 * 16.92713 * 18 16 15 20 20 Si 1.86796 * 120.00638 * 196.92752 * 18 16 15 21 21 H 1.48498 * 109.46854 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47461 * 119.99658 * 20 18 16 23 23 H 1.48498 * 109.47547 * 240.00146 * 20 18 16 24 24 C 1.47149 * 118.03452 * 309.46463 * 15 14 12 25 25 C 1.53299 * 108.38726 * 50.53711 * 24 15 14 26 26 O 1.42952 * 109.26339 * 307.72138 * 25 24 15 27 27 H 1.09001 * 109.47500 * 59.99260 * 1 2 3 28 28 H 1.08996 * 109.46919 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46630 * 299.99751 * 1 2 3 30 30 H 1.08998 * 109.47637 * 119.99982 * 2 1 3 31 31 H 1.09004 * 109.47056 * 240.00574 * 2 1 3 32 32 H 1.08006 * 126.41619 * 359.92847 * 4 3 2 33 33 H 1.07992 * 125.82910 * 179.97438 * 5 4 3 34 34 H 0.97000 * 120.00196 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.46318 * 299.99162 * 11 10 8 36 36 H 1.08994 * 109.47144 * 59.99009 * 11 10 8 37 37 H 1.08997 * 109.47344 * 59.99277 * 13 12 11 38 38 H 1.08995 * 109.47252 * 179.97438 * 13 12 11 39 39 H 1.09004 * 109.46603 * 299.99964 * 13 12 11 40 40 H 1.08996 * 109.68441 * 291.94495 * 14 12 11 41 41 H 1.08993 * 109.68203 * 52.47023 * 14 12 11 42 42 H 0.97000 * 120.00260 * 180.02562 * 19 18 16 43 43 H 1.09008 * 109.68030 * 170.26191 * 24 15 14 44 44 H 1.09004 * 109.68423 * 290.81261 * 24 15 14 45 45 H 1.08999 * 109.51231 * 67.62229 * 25 24 15 46 46 H 1.09000 * 109.51161 * 187.72069 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3754 2.1082 -1.0851 5 6 2.7648 3.3277 -0.6393 6 7 2.6479 3.3460 0.6865 7 6 2.1927 2.1805 1.0948 8 6 1.9217 1.8010 2.4931 9 8 1.5035 0.6887 2.7511 10 7 2.1372 2.6869 3.4857 11 6 1.8684 2.3095 4.8756 12 6 2.1947 3.4873 5.7960 13 6 1.3258 4.6882 5.4170 14 6 1.9159 3.0926 7.2509 15 7 2.4111 4.1668 8.1262 16 6 1.6139 4.7065 9.1000 17 1 1.7849 5.7176 9.4389 18 6 0.5859 3.9542 9.6514 19 7 0.5731 2.6467 9.5003 20 14 -0.7793 4.7971 10.6079 21 1 -0.5349 6.2617 10.6326 22 1 -2.0839 4.5245 9.9530 23 1 -0.8047 4.2756 11.9981 24 6 3.7883 4.6442 7.9239 25 6 3.9758 4.9633 6.4362 26 8 3.5747 3.8336 5.6574 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 2.3547 1.7779 -2.1132 33 1 3.1107 4.1449 -1.2547 34 1 2.4711 3.5741 3.2800 35 1 0.8165 2.0445 4.9830 36 1 2.4879 1.4546 5.1463 37 1 0.2738 4.4240 5.5246 38 1 1.5585 5.5267 6.0734 39 1 1.5258 4.9694 4.3830 40 1 0.8434 2.9647 7.3975 41 1 2.4319 2.1612 7.4839 42 1 -0.1454 2.1209 9.8853 43 1 3.9557 5.5438 8.5163 44 1 4.4934 3.8693 8.2248 45 1 3.3640 5.8248 6.1688 46 1 5.0246 5.1870 6.2413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107905292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:12 Heat of formation + Delta-G solvation = -10.568741 kcal Electronic energy + Delta-G solvation = -28224.846000 eV Core-core repulsion = 24343.878774 eV Total energy + Delta-G solvation = -3880.967227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -43.27190 -41.02659 -39.99520 -36.69323 -36.20191 -35.66410 -33.32290 -33.17835 -31.37325 -30.63913 -29.57781 -28.08113 -27.37481 -25.11225 -24.95163 -23.92616 -22.81284 -22.18471 -21.13779 -20.25763 -19.04061 -18.78086 -17.57784 -17.33965 -17.03767 -16.89871 -16.53105 -16.07417 -15.77115 -15.56295 -15.55403 -15.34770 -15.14580 -14.73009 -14.66504 -14.56936 -14.36938 -13.99736 -13.60424 -13.43649 -13.18101 -12.99973 -12.93410 -12.80601 -12.54498 -12.43148 -12.32292 -12.11118 -11.96414 -11.84742 -11.43284 -11.18294 -11.08328 -10.83795 -10.76503 -10.49918 -10.26720 -9.49011 -8.71365 -7.89005 -5.35529 0.33215 1.41489 1.46212 1.48359 1.58215 1.64382 2.23896 2.37686 2.49079 2.78387 3.24507 3.32065 3.49705 3.75083 3.84495 3.92838 3.99834 4.05434 4.10158 4.34920 4.41375 4.41903 4.46469 4.49145 4.54551 4.59984 4.70324 4.72652 4.77067 4.80693 4.96212 5.04628 5.10534 5.13966 5.20663 5.25332 5.28311 5.34268 5.53178 5.62589 5.68227 5.94019 6.29796 6.31861 6.37167 6.83754 7.05234 7.07809 7.76550 8.30928 9.16950 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.003094 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.364911 B = 9048.978901 C = 9790.601900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 N -0.412 5.412 4 C -0.006 4.006 5 C -0.048 4.048 6 N -0.466 5.466 7 C 0.103 3.897 8 C 0.599 3.401 9 O -0.568 6.568 10 N -0.686 5.686 11 C 0.151 3.849 12 C 0.093 3.907 13 C -0.153 4.153 14 C 0.170 3.830 15 N -0.607 5.607 16 C -0.258 4.258 17 H 0.073 0.927 18 C -0.049 4.049 19 N -0.935 5.935 20 Si 0.966 3.034 21 H -0.264 1.264 22 H -0.290 1.290 23 H -0.294 1.294 24 C 0.103 3.897 25 C 0.052 3.948 26 O -0.387 6.387 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.033 0.967 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.230 0.770 33 H 0.204 0.796 34 H 0.417 0.583 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.069 0.931 41 H -0.004 1.004 42 H 0.250 0.750 43 H 0.073 0.927 44 H 0.014 0.986 45 H 0.059 0.941 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.000 -0.648 -24.166 24.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.029 4.029 3 N -0.093 5.093 4 C -0.145 4.145 5 C -0.202 4.202 6 N -0.189 5.189 7 C -0.154 4.154 8 C 0.384 3.616 9 O -0.448 6.448 10 N -0.337 5.337 11 C 0.027 3.973 12 C 0.052 3.948 13 C -0.211 4.211 14 C 0.043 3.957 15 N -0.331 5.331 16 C -0.388 4.388 17 H 0.091 0.909 18 C -0.245 4.245 19 N -0.581 5.581 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.217 1.217 23 H -0.222 1.222 24 C -0.022 4.022 25 C -0.026 4.026 26 O -0.306 6.306 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.151 0.849 32 H 0.246 0.754 33 H 0.221 0.779 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.014 0.986 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.032 0.968 45 H 0.077 0.923 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.839 -1.161 -23.376 23.576 hybrid contribution -0.887 -0.104 0.801 1.200 sum 1.952 -1.265 -22.574 22.694 Atomic orbital electron populations 1.22023 0.93306 1.04233 1.01920 1.22304 0.96530 0.77883 1.06190 1.45528 1.44418 1.13404 1.05951 1.23705 1.03627 0.92946 0.94190 1.23057 1.07716 0.99264 0.90122 1.70161 1.15166 1.18922 1.14632 1.22258 1.13339 0.89727 0.90104 1.16755 0.77677 0.84197 0.82948 1.90769 1.48248 1.21553 1.84217 1.45507 1.65357 1.17411 1.05408 1.21170 1.01097 0.96219 0.78836 1.22217 0.82741 0.94398 0.95459 1.22107 0.99460 0.98234 1.01258 1.21034 0.99514 0.88996 0.86137 1.44254 1.09714 1.42612 1.36558 1.19531 1.09949 0.95712 1.13574 0.90917 1.25778 1.03132 0.95476 1.00098 1.70186 1.33407 1.05052 1.49480 0.85225 0.79228 0.78590 0.77523 1.18856 1.21692 1.22167 1.21805 0.85989 0.98096 0.96309 1.23116 1.01001 0.88113 0.90331 1.87833 1.25200 1.50139 1.67465 0.90882 0.88632 0.94742 0.89499 0.84904 0.75385 0.77906 0.74521 0.90147 0.91881 0.92394 0.91815 0.91181 0.91269 0.98597 0.94044 0.90885 0.96803 0.92296 0.86559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.22 71.98 0.74 -1.72 16 2 C 0.09 1.46 6.17 86.38 0.53 2.00 16 3 N -0.41 -8.41 2.76 -516.42 -1.42 -9.83 16 4 C -0.01 -0.08 11.53 83.52 0.96 0.88 16 5 C -0.05 -0.88 11.85 83.88 0.99 0.11 16 6 N -0.47 -12.48 10.90 -189.54 -2.07 -14.55 16 7 C 0.10 2.88 7.78 136.28 1.06 3.94 16 8 C 0.60 19.64 7.81 86.66 0.68 20.32 16 9 O -0.57 -20.62 14.47 -4.04 -0.06 -20.68 16 10 N -0.69 -22.31 5.15 -466.40 -2.40 -24.71 16 11 C 0.15 5.49 4.82 86.38 0.42 5.91 16 12 C 0.09 3.59 0.76 -10.69 -0.01 3.59 16 13 C -0.15 -5.39 7.92 71.98 0.57 -4.82 16 14 C 0.17 8.28 4.12 86.36 0.36 8.63 16 15 N -0.61 -30.24 2.57 -697.52 -1.79 -32.03 16 16 C -0.26 -13.87 9.65 84.03 0.81 -13.06 16 17 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 18 C -0.05 -2.72 4.95 84.86 0.42 -2.31 16 19 N -0.94 -55.08 11.14 21.65 0.24 -54.84 16 20 Si 0.97 44.40 29.59 68.60 2.03 46.43 16 21 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 24 C 0.10 4.25 6.74 86.36 0.58 4.83 16 25 C 0.05 1.75 6.60 72.08 0.48 2.22 16 26 O -0.39 -14.52 9.98 -148.98 -1.49 -16.01 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.03 0.79 7.81 -2.38 -0.02 0.77 16 30 H 0.09 1.85 6.65 -2.39 -0.02 1.83 16 31 H 0.13 1.00 8.13 -2.39 -0.02 0.98 16 32 H 0.23 0.81 8.06 -2.91 -0.02 0.79 16 33 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.42 12.96 6.88 -92.71 -0.64 12.32 16 35 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.06 2.39 6.12 -2.39 -0.01 2.37 16 39 H 0.07 2.12 6.87 -2.38 -0.02 2.10 16 40 H 0.07 3.74 6.13 -2.39 -0.01 3.73 16 41 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 43 H 0.07 2.80 7.96 -2.38 -0.02 2.78 16 44 H 0.01 0.60 8.14 -2.38 -0.02 0.59 16 45 H 0.06 1.91 6.26 -2.39 -0.01 1.89 16 46 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -71.91 369.01 1.98 -69.92 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.35 Total: 25.76 kcal Atomic # 6 Polarization: 21.94 SS G_CDS: 8.58 Total: 30.53 kcal Atomic # 7 Polarization: -128.51 SS G_CDS: -7.44 Total: -135.95 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -1.54 Total: -36.68 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -71.91 1.98 -69.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107905292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.355 kcal (2) G-P(sol) polarization free energy of solvation -71.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds