Wall clock time and date at job start Fri Apr 10 2020 18:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42906 * 109.46770 * 2 1 4 4 C 1.42898 * 113.99637 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47124 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99910 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00280 * 179.97438 * 5 4 3 8 8 C 1.47018 * 125.64993 * 180.02562 * 7 5 4 9 9 C 1.54325 * 107.40412 * 178.90064 * 8 7 5 10 10 H 1.09000 * 110.72188 * 96.24097 * 9 8 7 11 11 C 1.50696 * 110.72143 * 219.52371 * 9 8 7 12 12 C 1.34664 * 125.99106 * 33.25805 * 11 9 8 13 13 N 1.36889 * 106.81892 * 179.84834 * 12 11 9 14 14 C 1.46494 * 126.39926 * 180.11604 * 13 12 11 15 15 C 1.35046 * 107.20231 * 0.41797 * 13 12 11 16 16 N 1.30503 * 108.69908 * 359.73621 * 15 13 12 17 17 C 1.55405 * 102.82616 * 337.97548 * 9 8 7 18 18 H 1.09000 * 110.89538 * 277.26533 * 17 9 8 19 19 N 1.46502 * 111.07038 * 153.48335 * 17 9 8 20 20 C 1.36935 * 119.99899 * 161.20915 * 19 17 9 21 21 H 1.08003 * 120.00376 * 0.02562 * 20 19 17 22 22 C 1.38815 * 120.00278 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99732 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00230 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47196 * 90.00156 * 24 22 20 26 26 H 1.48499 * 109.46924 * 210.00314 * 24 22 20 27 27 H 1.48498 * 109.47142 * 329.99876 * 24 22 20 28 28 C 1.47426 * 125.64489 * 0.04405 * 7 5 4 29 29 H 1.08999 * 109.46931 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46695 * 299.99689 * 1 2 3 31 31 H 1.08999 * 109.47411 * 59.99729 * 1 2 3 32 32 H 1.08997 * 109.46616 * 240.00496 * 2 1 3 33 33 H 1.08999 * 109.47165 * 119.99779 * 2 1 3 34 34 H 1.09001 * 109.47279 * 60.00234 * 4 3 2 35 35 H 1.09003 * 109.46940 * 300.00017 * 4 3 2 36 36 H 1.09002 * 109.88241 * 298.39592 * 8 7 5 37 37 H 1.09000 * 109.88049 * 59.40721 * 8 7 5 38 38 H 1.08004 * 126.59159 * 359.96786 * 12 11 9 39 39 H 1.08994 * 109.47363 * 270.32553 * 14 13 12 40 40 H 1.09004 * 109.46922 * 30.33109 * 14 13 12 41 41 H 1.09000 * 109.46936 * 150.32372 * 14 13 12 42 42 H 1.07999 * 125.65157 * 179.72592 * 15 13 12 43 43 H 0.96999 * 120.00092 * 341.21066 * 19 17 9 44 44 H 0.96994 * 120.00134 * 179.97438 * 23 22 20 45 45 H 1.08999 * 110.36956 * 322.93474 * 28 7 5 46 46 H 1.09003 * 110.36599 * 85.25378 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9162 -0.0012 6 8 2.9609 3.7729 -0.0006 7 7 5.1209 3.2664 -0.0013 8 6 5.6379 4.6427 -0.0013 9 6 7.1785 4.5570 0.0269 10 1 7.5878 4.6394 -0.9800 11 6 7.7552 5.6190 0.9272 12 6 7.1881 6.0970 2.0512 13 7 8.0435 7.0386 2.5568 14 6 7.8463 7.8269 3.7757 15 6 9.0999 7.1097 1.7186 16 7 8.9206 6.2578 0.7463 17 6 7.4346 3.1392 0.6093 18 1 7.3760 3.1496 1.6977 19 7 8.7253 2.6108 0.1609 20 6 9.3154 1.5780 0.8393 21 1 8.8291 1.1527 1.7048 22 6 10.5386 1.0776 0.4148 23 7 11.1315 1.5962 -0.6397 24 14 11.3432 -0.3317 1.3399 25 1 10.8948 -1.6236 0.7612 26 1 12.8195 -0.2223 1.2220 27 1 10.9550 -0.2694 2.7719 28 6 6.2618 2.3327 -0.0017 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8333 0.9768 -0.8908 35 1 3.8340 0.9765 0.8892 36 1 5.3119 5.1611 -0.9029 37 1 5.2800 5.1731 0.8811 38 1 6.2414 5.7942 2.4736 39 1 7.3155 8.7470 3.5314 40 1 7.2616 7.2491 4.4915 41 1 8.8153 8.0711 4.2111 42 1 9.9519 7.7634 1.8336 43 1 9.1619 2.9925 -0.6167 44 1 11.9864 1.2469 -0.9361 45 1 6.0391 1.4612 0.6139 46 1 6.5017 2.0274 -1.0203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130485835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:45 Heat of formation + Delta-G solvation = 8.267598 kcal Electronic energy + Delta-G solvation = -27454.435950 eV Core-core repulsion = 23574.285528 eV Total energy + Delta-G solvation = -3880.150422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.85773 -39.82924 -38.08262 -37.01439 -34.08496 -33.93244 -32.04678 -31.50149 -30.65862 -28.65790 -27.60973 -27.41017 -26.23843 -23.94943 -22.97374 -22.78207 -21.11059 -20.69391 -19.40189 -19.09904 -17.47932 -17.05375 -16.81262 -16.56184 -16.31888 -15.52899 -15.45427 -15.26777 -14.59416 -14.18274 -14.14725 -13.73540 -13.60855 -13.24989 -13.17566 -13.11529 -12.86238 -12.73275 -12.63199 -12.59421 -12.29072 -12.14755 -11.52414 -11.42258 -11.36659 -11.23746 -10.86100 -10.79316 -10.44448 -10.09484 -9.79404 -9.77157 -9.59907 -9.57356 -9.27489 -8.99562 -8.39093 -8.05106 -7.01385 -5.78968 -3.09483 2.25517 2.78291 2.80551 2.94663 3.40407 3.44223 3.45976 3.47898 3.89131 4.50107 4.63317 4.67356 4.75145 4.87912 4.98587 5.00199 5.03651 5.12805 5.18211 5.19249 5.21586 5.22548 5.27819 5.37848 5.49256 5.57085 5.63543 5.72371 5.74231 5.84328 5.89912 5.94606 6.03365 6.24305 6.30536 6.38768 6.44744 6.48369 6.85872 6.98755 7.01667 7.39162 7.65657 7.73620 8.34850 8.38028 8.41909 9.49943 10.04749 10.40275 11.42619 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.007476 B = 0.004380 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3744.476762 B = 6391.303588 C = 9426.371351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.367 6.367 4 C 0.049 3.951 5 C 0.529 3.471 6 O -0.535 6.535 7 N -0.612 5.612 8 C 0.124 3.876 9 C -0.027 4.027 10 H 0.098 0.902 11 C 0.039 3.961 12 C -0.063 4.063 13 N -0.468 5.468 14 C 0.076 3.924 15 C 0.177 3.823 16 N -0.471 5.471 17 C 0.188 3.812 18 H 0.063 0.937 19 N -0.704 5.704 20 C -0.247 4.247 21 H 0.070 0.930 22 C -0.006 4.006 23 N -0.924 5.924 24 Si 0.905 3.095 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.068 3.932 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.170 0.830 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.201 0.799 43 H 0.390 0.610 44 H 0.256 0.744 45 H 0.071 0.929 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.062 5.843 6.063 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.286 6.286 4 C -0.030 4.030 5 C 0.316 3.684 6 O -0.411 6.411 7 N -0.348 5.348 8 C 0.001 3.999 9 C -0.048 4.048 10 H 0.117 0.883 11 C -0.091 4.091 12 C -0.195 4.195 13 N -0.152 5.152 14 C -0.067 4.067 15 C -0.105 4.105 16 N -0.188 5.188 17 C 0.074 3.926 18 H 0.081 0.919 19 N -0.344 5.344 20 C -0.378 4.378 21 H 0.088 0.912 22 C -0.203 4.203 23 N -0.571 5.571 24 Si 0.736 3.264 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.058 4.058 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.187 0.813 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.218 0.782 43 H 0.225 0.775 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.101 6.257 5.659 15.582 hybrid contribution 0.482 -0.854 1.028 1.420 sum -12.619 5.403 6.687 15.269 Atomic orbital electron populations 1.21724 0.93562 1.02095 1.03326 1.22537 0.95781 0.83548 1.00334 1.87984 1.18876 1.26215 1.95484 1.22155 0.83300 0.94722 1.02846 1.19815 0.81128 0.90400 0.77046 1.90692 1.48763 1.51924 1.49747 1.48419 1.04942 1.08781 1.72651 1.21884 0.92838 0.83164 1.02044 1.20728 0.91812 0.93197 0.99068 0.88332 1.20100 0.93030 0.99785 0.96202 1.22338 0.99106 0.98332 0.99716 1.45341 1.17751 1.31067 1.21006 1.21964 1.03669 0.95804 0.85259 1.24957 0.93915 1.02485 0.89136 1.70196 1.16797 1.07841 1.23939 1.21309 0.86251 0.88215 0.96780 0.91887 1.42239 1.17605 1.39821 1.34723 1.19178 1.01539 1.08567 1.08538 0.91223 1.24738 0.97624 0.99787 0.98112 1.69669 1.17715 1.43702 1.26007 0.86240 0.78781 0.82272 0.79133 1.21663 1.21764 1.20835 1.23648 0.86343 0.93519 1.02326 0.91075 0.91793 0.91759 0.93133 0.93166 0.90139 0.90186 0.91400 0.91418 0.81316 0.90881 0.89931 0.89653 0.78217 0.77469 0.93397 0.91052 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.92 16 2 C 0.05 0.56 6.66 37.16 0.25 0.81 16 3 O -0.37 -5.26 9.88 -55.14 -0.54 -5.80 16 4 C 0.05 0.66 5.42 36.00 0.20 0.86 16 5 C 0.53 8.70 7.93 -10.99 -0.09 8.61 16 6 O -0.53 -10.62 16.83 -14.36 -0.24 -10.87 16 7 N -0.61 -9.63 3.33 -170.53 -0.57 -10.19 16 8 C 0.12 1.91 6.40 -3.07 -0.02 1.89 16 9 C -0.03 -0.47 3.11 -89.80 -0.28 -0.74 16 10 H 0.10 1.81 8.00 -51.93 -0.42 1.39 16 11 C 0.04 0.66 6.11 -82.86 -0.51 0.16 16 12 C -0.06 -0.91 10.53 -16.56 -0.17 -1.08 16 13 N -0.47 -5.81 3.15 -126.00 -0.40 -6.21 16 14 C 0.08 0.55 11.18 59.84 0.67 1.22 16 15 C 0.18 2.54 12.56 -90.37 -1.14 1.40 16 16 N -0.47 -8.72 11.25 -10.88 -0.12 -8.84 16 17 C 0.19 3.56 3.13 -65.65 -0.21 3.36 16 18 H 0.06 1.25 8.03 -51.93 -0.42 0.83 16 19 N -0.70 -16.85 5.28 -51.23 -0.27 -17.12 16 20 C -0.25 -6.54 9.98 -15.06 -0.15 -6.69 16 21 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 22 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 23 N -0.92 -27.28 13.06 55.49 0.72 -26.56 16 24 Si 0.90 21.75 29.55 -169.99 -5.02 16.73 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.07 1.11 6.39 -2.54 -0.02 1.09 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.92 7.85 -51.93 -0.41 0.52 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.99 6.11 -51.93 -0.32 0.68 16 38 H 0.17 2.08 7.09 -52.48 -0.37 1.71 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.20 2.08 8.06 -52.49 -0.42 1.65 16 43 H 0.39 10.22 7.72 -40.82 -0.32 9.90 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.07 1.09 7.48 -51.93 -0.39 0.70 16 46 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -35.44 384.86 -9.07 -44.51 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -7.25 Total: 8.86 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -1.18 Total: 9.69 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -0.63 Total: -68.92 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.79 Total: -16.67 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.44 -9.07 -44.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130485835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.779 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds