Wall clock time and date at job start Fri Apr 10 2020 18:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42906 * 109.46770 * 2 1 4 4 C 1.42898 * 113.99637 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47124 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99910 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00280 * 179.97438 * 5 4 3 8 8 C 1.47018 * 125.64993 * 180.02562 * 7 5 4 9 9 C 1.54325 * 107.40412 * 178.90064 * 8 7 5 10 10 H 1.09000 * 110.72188 * 96.24097 * 9 8 7 11 11 C 1.50696 * 110.72143 * 219.52371 * 9 8 7 12 12 C 1.34664 * 125.99106 * 33.25805 * 11 9 8 13 13 N 1.36889 * 106.81892 * 179.84834 * 12 11 9 14 14 C 1.46494 * 126.39926 * 180.11604 * 13 12 11 15 15 C 1.35046 * 107.20231 * 0.41797 * 13 12 11 16 16 N 1.30503 * 108.69908 * 359.73621 * 15 13 12 17 17 C 1.55405 * 102.82616 * 337.97548 * 9 8 7 18 18 H 1.09000 * 110.89538 * 277.26533 * 17 9 8 19 19 N 1.46502 * 111.07038 * 153.48335 * 17 9 8 20 20 C 1.36935 * 119.99899 * 161.20915 * 19 17 9 21 21 H 1.08003 * 120.00376 * 0.02562 * 20 19 17 22 22 C 1.38815 * 120.00278 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99732 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00230 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47196 * 90.00156 * 24 22 20 26 26 H 1.48499 * 109.46924 * 210.00314 * 24 22 20 27 27 H 1.48498 * 109.47142 * 329.99876 * 24 22 20 28 28 C 1.47426 * 125.64489 * 0.04405 * 7 5 4 29 29 H 1.08999 * 109.46931 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46695 * 299.99689 * 1 2 3 31 31 H 1.08999 * 109.47411 * 59.99729 * 1 2 3 32 32 H 1.08997 * 109.46616 * 240.00496 * 2 1 3 33 33 H 1.08999 * 109.47165 * 119.99779 * 2 1 3 34 34 H 1.09001 * 109.47279 * 60.00234 * 4 3 2 35 35 H 1.09003 * 109.46940 * 300.00017 * 4 3 2 36 36 H 1.09002 * 109.88241 * 298.39592 * 8 7 5 37 37 H 1.09000 * 109.88049 * 59.40721 * 8 7 5 38 38 H 1.08004 * 126.59159 * 359.96786 * 12 11 9 39 39 H 1.08994 * 109.47363 * 270.32553 * 14 13 12 40 40 H 1.09004 * 109.46922 * 30.33109 * 14 13 12 41 41 H 1.09000 * 109.46936 * 150.32372 * 14 13 12 42 42 H 1.07999 * 125.65157 * 179.72592 * 15 13 12 43 43 H 0.96999 * 120.00092 * 341.21066 * 19 17 9 44 44 H 0.96994 * 120.00134 * 179.97438 * 23 22 20 45 45 H 1.08999 * 110.36956 * 322.93474 * 28 7 5 46 46 H 1.09003 * 110.36599 * 85.25378 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9162 -0.0012 6 8 2.9609 3.7729 -0.0006 7 7 5.1209 3.2664 -0.0013 8 6 5.6379 4.6427 -0.0013 9 6 7.1785 4.5570 0.0269 10 1 7.5878 4.6394 -0.9800 11 6 7.7552 5.6190 0.9272 12 6 7.1881 6.0970 2.0512 13 7 8.0435 7.0386 2.5568 14 6 7.8463 7.8269 3.7757 15 6 9.0999 7.1097 1.7186 16 7 8.9206 6.2578 0.7463 17 6 7.4346 3.1392 0.6093 18 1 7.3760 3.1496 1.6977 19 7 8.7253 2.6108 0.1609 20 6 9.3154 1.5780 0.8393 21 1 8.8291 1.1527 1.7048 22 6 10.5386 1.0776 0.4148 23 7 11.1315 1.5962 -0.6397 24 14 11.3432 -0.3317 1.3399 25 1 10.8948 -1.6236 0.7612 26 1 12.8195 -0.2223 1.2220 27 1 10.9550 -0.2694 2.7719 28 6 6.2618 2.3327 -0.0017 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8333 0.9768 -0.8908 35 1 3.8340 0.9765 0.8892 36 1 5.3119 5.1611 -0.9029 37 1 5.2800 5.1731 0.8811 38 1 6.2414 5.7942 2.4736 39 1 7.3155 8.7470 3.5314 40 1 7.2616 7.2491 4.4915 41 1 8.8153 8.0711 4.2111 42 1 9.9519 7.7634 1.8336 43 1 9.1619 2.9925 -0.6167 44 1 11.9864 1.2469 -0.9361 45 1 6.0391 1.4612 0.6139 46 1 6.5017 2.0274 -1.0203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130485835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:43 Heat of formation + Delta-G solvation = -14.570906 kcal Electronic energy + Delta-G solvation = -27455.426301 eV Core-core repulsion = 23574.285528 eV Total energy + Delta-G solvation = -3881.140773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.96876 -41.12977 -39.24342 -38.26815 -35.82808 -35.03646 -33.44719 -32.56703 -32.14435 -29.81963 -29.06397 -28.48427 -27.22167 -25.77660 -24.18914 -23.65686 -22.37121 -21.98806 -20.68181 -20.39940 -19.13177 -18.38059 -17.92903 -17.67333 -17.37486 -16.76226 -16.62727 -16.42250 -16.12458 -15.55867 -15.35596 -14.97468 -14.87545 -14.68695 -14.48876 -14.24931 -14.04087 -13.79663 -13.59593 -13.46697 -13.35581 -13.21936 -13.04142 -12.88254 -12.57920 -12.45082 -12.32298 -12.16535 -12.12212 -11.76153 -11.72601 -11.07258 -10.86723 -10.74998 -10.67229 -10.36735 -9.73723 -9.28516 -8.92653 -7.87928 -5.17866 1.17234 1.50453 1.50920 1.52284 1.59976 1.63645 2.05296 2.23206 2.58739 2.86720 3.36961 3.41780 3.60490 3.82231 3.92029 4.03066 4.09752 4.10468 4.15489 4.16678 4.26221 4.28303 4.36545 4.38517 4.42948 4.49598 4.51912 4.59699 4.70419 4.74673 4.78171 4.83264 4.93927 5.04344 5.05158 5.14568 5.28010 5.35311 5.38605 5.57133 5.84492 6.09988 6.30719 6.40643 6.44332 7.06538 7.28527 7.38678 8.10881 8.35666 9.35033 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.007476 B = 0.004380 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3744.476762 B = 6391.303588 C = 9426.371351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.397 6.397 4 C 0.052 3.948 5 C 0.526 3.474 6 O -0.572 6.572 7 N -0.607 5.607 8 C 0.130 3.870 9 C -0.015 4.015 10 H 0.075 0.925 11 C 0.001 3.999 12 C -0.054 4.054 13 N -0.461 5.461 14 C 0.068 3.932 15 C 0.176 3.824 16 N -0.531 5.531 17 C 0.185 3.815 18 H 0.059 0.941 19 N -0.716 5.716 20 C -0.238 4.238 21 H 0.080 0.920 22 C -0.069 4.069 23 N -0.966 5.966 24 Si 0.968 3.032 25 H -0.284 1.284 26 H -0.302 1.302 27 H -0.270 1.270 28 C 0.083 3.917 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.190 0.810 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.233 0.767 43 H 0.375 0.625 44 H 0.249 0.751 45 H 0.090 0.910 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.321 5.374 8.202 17.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.317 6.317 4 C -0.027 4.027 5 C 0.316 3.684 6 O -0.452 6.452 7 N -0.342 5.342 8 C 0.007 3.993 9 C -0.036 4.036 10 H 0.094 0.906 11 C -0.128 4.128 12 C -0.188 4.188 13 N -0.143 5.143 14 C -0.073 4.073 15 C -0.107 4.107 16 N -0.249 5.249 17 C 0.074 3.926 18 H 0.077 0.923 19 N -0.354 5.354 20 C -0.370 4.370 21 H 0.098 0.902 22 C -0.262 4.262 23 N -0.616 5.616 24 Si 0.798 3.202 25 H -0.211 1.211 26 H -0.229 1.229 27 H -0.195 1.195 28 C -0.042 4.042 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.207 0.793 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.249 0.751 43 H 0.207 0.793 44 H 0.058 0.942 45 H 0.108 0.892 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.418 5.797 7.854 17.412 hybrid contribution 0.799 -0.589 0.420 1.078 sum -13.618 5.209 8.274 16.765 Atomic orbital electron populations 1.21766 0.92772 1.03533 1.02554 1.22815 0.96510 0.81989 1.01662 1.87954 1.19192 1.28789 1.95760 1.22203 0.83469 0.92325 1.04689 1.20430 0.80484 0.91637 0.75865 1.90672 1.49577 1.53336 1.51583 1.48395 1.04851 1.08622 1.72309 1.21828 0.91548 0.83345 1.02590 1.20507 0.92751 0.92459 0.97885 0.90622 1.20182 0.93766 1.01042 0.97796 1.22578 0.99587 0.97912 0.98702 1.45613 1.16486 1.30398 1.21808 1.22354 1.05518 0.96003 0.83400 1.25530 0.94949 1.01758 0.88425 1.70102 1.18203 1.09998 1.26628 1.21415 0.85013 0.89677 0.96543 0.92297 1.42339 1.19339 1.39577 1.34174 1.19582 1.01208 1.08111 1.08079 0.90193 1.25499 0.98694 1.02660 0.99332 1.69840 1.17968 1.45661 1.28097 0.85223 0.76965 0.79535 0.78498 1.21120 1.22924 1.19524 1.23298 0.85401 0.93497 1.02031 0.88518 0.92491 0.92610 0.91866 0.91670 0.88353 0.87958 0.91417 0.90261 0.79303 0.88955 0.88686 0.87571 0.75071 0.79255 0.94207 0.89171 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 10.28 71.98 0.74 -1.60 16 2 C 0.05 0.84 6.66 71.98 0.48 1.32 16 3 O -0.40 -10.76 9.88 -129.94 -1.28 -12.04 16 4 C 0.05 1.28 5.42 71.24 0.39 1.67 16 5 C 0.53 16.67 7.93 87.66 0.69 17.37 16 6 O -0.57 -22.43 16.83 16.00 0.27 -22.16 16 7 N -0.61 -18.46 3.33 -811.82 -2.70 -21.16 16 8 C 0.13 3.97 6.40 86.73 0.56 4.52 16 9 C -0.02 -0.53 3.11 -10.26 -0.03 -0.56 16 10 H 0.08 2.95 8.00 -2.39 -0.02 2.93 16 11 C 0.00 0.04 6.11 41.39 0.25 0.30 16 12 C -0.05 -1.49 10.53 83.08 0.88 -0.61 16 13 N -0.46 -10.53 3.15 -552.54 -1.74 -12.27 16 14 C 0.07 0.76 11.18 127.77 1.43 2.19 16 15 C 0.18 4.87 12.56 180.26 2.26 7.13 16 16 N -0.53 -20.02 11.25 -188.32 -2.12 -22.13 16 17 C 0.18 7.00 3.13 46.47 0.15 7.15 16 18 H 0.06 2.29 8.03 -2.39 -0.02 2.27 16 19 N -0.72 -34.84 5.28 -315.98 -1.67 -36.51 16 20 C -0.24 -12.58 9.98 84.03 0.84 -11.74 16 21 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 23 N -0.97 -58.54 13.06 21.65 0.28 -58.26 16 24 Si 0.97 44.86 29.55 68.60 2.03 46.88 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 C 0.08 2.64 6.39 86.85 0.55 3.20 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 2.05 8.14 -2.39 -0.02 2.04 16 35 H 0.10 2.04 7.85 -2.39 -0.02 2.03 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.08 2.24 6.11 -2.39 -0.01 2.23 16 38 H 0.19 4.24 7.09 -2.91 -0.02 4.22 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.23 4.42 8.06 -2.91 -0.02 4.39 16 43 H 0.38 20.44 7.72 -92.71 -0.72 19.73 16 44 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 45 H 0.09 2.54 7.48 -2.39 -0.02 2.52 16 46 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -78.85 384.86 2.98 -75.86 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: 0.26 Total: 34.86 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 9.65 Total: 26.93 kcal Atomic # 7 Polarization: -142.39 SS G_CDS: -7.95 Total: -150.33 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -1.01 Total: -34.21 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -78.85 2.98 -75.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130485835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.292 kcal (2) G-P(sol) polarization free energy of solvation -78.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds