Wall clock time and date at job start Fri Apr 10 2020 18:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.44559 * 2 1 4 4 C 1.53040 * 109.45888 * 240.03598 * 2 1 3 5 5 C 1.53188 * 109.31221 * 301.34418 * 4 2 1 6 6 N 1.46921 * 108.77702 * 305.36511 * 5 4 2 7 7 C 1.34778 * 120.62991 * 233.58921 * 6 5 4 8 8 O 1.21282 * 119.99956 * 180.02562 * 7 6 5 9 9 C 1.50693 * 120.00222 * 0.02562 * 7 6 5 10 10 C 1.53007 * 109.47265 * 180.02562 * 9 7 6 11 11 N 1.46503 * 109.46931 * 180.02562 * 10 9 7 12 12 C 1.34598 * 126.43831 * 125.00328 * 11 10 9 13 13 N 1.31067 * 106.67915 * 179.97438 * 12 11 10 14 14 N 1.28838 * 107.99353 * 359.97438 * 13 12 11 15 15 N 1.28744 * 109.39226 * 359.73260 * 14 13 12 16 16 C 1.46923 * 118.73736 * 53.60751 * 6 5 4 17 17 C 1.53041 * 109.45902 * 119.96895 * 2 1 3 18 18 H 1.09001 * 109.51934 * 178.62684 * 17 2 1 19 19 C 1.53000 * 109.49533 * 298.70150 * 17 2 1 20 20 N 1.46499 * 109.46840 * 184.83838 * 19 17 2 21 21 C 1.36936 * 120.00002 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00140 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00367 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99972 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00444 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47203 * 89.99650 * 25 23 21 27 27 H 1.48501 * 109.47104 * 209.99764 * 25 23 21 28 28 H 1.48504 * 109.46767 * 329.99904 * 25 23 21 29 29 H 1.08996 * 109.47019 * 300.03089 * 1 2 3 30 30 H 1.08997 * 109.47177 * 60.03452 * 1 2 3 31 31 H 1.09001 * 109.47065 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.49735 * 181.39075 * 4 2 1 33 33 H 1.09004 * 109.49932 * 61.29619 * 4 2 1 34 34 H 1.09008 * 109.58479 * 185.57747 * 5 4 2 35 35 H 1.08996 * 109.70643 * 65.22835 * 5 4 2 36 36 H 1.09004 * 109.47016 * 299.99606 * 9 7 6 37 37 H 1.09000 * 109.47345 * 60.00017 * 9 7 6 38 38 H 1.09004 * 109.46622 * 299.99651 * 10 9 7 39 39 H 1.09000 * 109.47085 * 59.99662 * 10 9 7 40 40 H 1.08000 * 126.65839 * 359.95495 * 12 11 10 41 41 H 1.09006 * 109.58550 * 186.60523 * 16 6 5 42 42 H 1.08996 * 109.58373 * 66.18439 * 16 6 5 43 43 H 1.09002 * 109.47398 * 304.84165 * 19 17 2 44 44 H 1.09001 * 109.47194 * 64.84345 * 19 17 2 45 45 H 0.97000 * 120.00420 * 0.02562 * 20 19 17 46 46 H 0.96996 * 120.00586 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 1.4995 -2.1541 -1.2643 6 7 1.8625 -2.8088 -0.0001 7 6 2.5156 -3.9878 -0.0002 8 8 2.8093 -4.5184 1.0501 9 6 2.8811 -4.6467 -1.3053 10 6 3.6094 -5.9629 -1.0257 11 7 3.9652 -6.6031 -2.2945 12 6 5.1957 -6.9936 -2.6756 13 7 5.0711 -7.5163 -3.8710 14 7 3.8289 -7.4507 -4.2066 15 7 3.1569 -6.9049 -3.2537 16 6 1.4996 -2.1541 1.2641 17 6 2.0398 -0.7208 1.2501 18 1 3.1296 -0.7428 1.2388 19 6 1.5569 0.0194 2.4990 20 7 2.1393 -0.6023 3.6908 21 6 1.8473 -0.1068 4.9335 22 1 1.1874 0.7421 5.0351 23 6 2.3995 -0.6955 6.0629 24 7 3.2034 -1.7303 5.9392 25 14 2.0007 -0.0200 7.7582 26 1 0.7972 -0.7055 8.2936 27 1 3.1505 -0.2558 8.6680 28 1 1.7375 1.4382 7.6606 29 1 -0.3633 0.5143 0.8897 30 1 -0.3633 0.5133 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 3.1295 -0.7427 -1.2384 33 1 1.6957 -0.1934 -2.1399 34 1 1.9382 -2.7017 -2.0986 35 1 0.4147 -2.1369 -1.3687 36 1 1.9751 -4.8476 -1.8771 37 1 3.5321 -3.9850 -1.8766 38 1 4.5154 -5.7624 -0.4538 39 1 2.9581 -6.6244 -0.4546 40 1 6.1084 -6.8951 -2.1067 41 1 1.9383 -2.7018 2.0983 42 1 0.4147 -2.1348 1.3672 43 1 1.8666 1.0631 2.4454 44 1 0.4697 -0.0345 2.5556 45 1 2.7317 -1.3650 3.5997 46 1 3.5890 -2.1420 6.7283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133204559.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:02 Heat of formation + Delta-G solvation = 67.549212 kcal Electronic energy + Delta-G solvation = -27502.927546 eV Core-core repulsion = 23657.640519 eV Total energy + Delta-G solvation = -3845.287027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.17840 -41.56676 -39.48035 -37.04563 -36.64423 -34.93389 -33.57206 -33.47313 -32.61639 -31.36961 -28.75626 -27.83737 -26.48283 -25.46545 -24.89463 -24.78815 -23.33529 -22.57317 -20.83044 -19.50426 -18.97711 -18.88831 -18.07048 -17.66970 -17.00426 -16.86968 -16.75381 -16.68345 -15.98402 -15.71043 -15.46073 -15.28632 -14.86683 -14.55490 -14.50025 -14.15878 -13.98212 -13.77186 -13.65313 -13.21783 -13.04514 -12.93931 -12.85808 -12.65661 -12.52151 -12.44418 -12.20474 -12.12507 -12.02513 -11.90726 -11.84896 -11.72576 -11.38774 -11.33713 -11.21368 -10.92942 -10.86902 -9.60425 -8.99812 -7.94878 -5.24462 0.27128 0.96635 1.22586 1.45655 1.47741 1.52810 1.56092 1.98419 2.55140 3.21857 3.36669 3.38243 3.51867 3.56205 3.72083 3.80862 3.84112 3.88974 4.08479 4.17591 4.23789 4.30950 4.34583 4.42580 4.46788 4.52658 4.57612 4.61689 4.72173 4.79061 4.79219 4.85344 4.93148 4.99792 5.10816 5.18691 5.22538 5.26281 5.31232 5.40993 5.48051 5.50805 5.60980 6.26414 6.38498 7.08580 7.32307 7.56410 8.08994 8.30792 9.28404 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.002780 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.373495 B =10071.231454 C =11569.215058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 H 0.077 0.923 4 C -0.123 4.123 5 C 0.097 3.903 6 N -0.604 5.604 7 C 0.513 3.487 8 O -0.583 6.583 9 C -0.140 4.140 10 C 0.130 3.870 11 N -0.302 5.302 12 C 0.182 3.818 13 N -0.343 5.343 14 N -0.110 5.110 15 N -0.107 5.107 16 C 0.129 3.871 17 C -0.088 4.088 18 H 0.054 0.946 19 C 0.158 3.842 20 N -0.747 5.747 21 C -0.245 4.245 22 H 0.077 0.923 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.973 3.027 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.268 1.268 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.144 0.856 39 H 0.111 0.889 40 H 0.282 0.718 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.021 0.979 44 H 0.028 0.972 45 H 0.372 0.628 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.693 -2.267 -21.405 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.100 4.100 3 H 0.095 0.905 4 C -0.161 4.161 5 C -0.024 4.024 6 N -0.336 5.336 7 C 0.301 3.699 8 O -0.463 6.463 9 C -0.180 4.180 10 C 0.009 3.991 11 N -0.104 5.104 12 C -0.116 4.116 13 N -0.191 5.191 14 N -0.105 5.105 15 N -0.095 5.095 16 C 0.006 3.994 17 C -0.108 4.108 18 H 0.072 0.928 19 C 0.032 3.968 20 N -0.389 5.389 21 C -0.377 4.377 22 H 0.095 0.905 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.802 3.198 26 H -0.215 1.215 27 H -0.223 1.223 28 H -0.192 1.192 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.106 0.894 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.162 0.838 39 H 0.129 0.871 40 H 0.297 0.703 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.039 0.961 44 H 0.046 0.954 45 H 0.203 0.797 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.363 -2.805 -21.910 22.131 hybrid contribution 0.566 0.277 2.458 2.537 sum -0.797 -2.528 -19.452 19.632 Atomic orbital electron populations 1.21963 0.94257 1.02112 1.02375 1.21069 0.96735 0.99346 0.92832 0.90472 1.21937 1.00992 0.94926 0.98239 1.22159 1.01939 0.93895 0.84383 1.48195 1.56497 1.20772 1.08138 1.20783 0.77087 0.80936 0.91065 1.90803 1.55628 1.64489 1.35387 1.21840 1.04616 0.96143 0.95435 1.22144 1.05291 0.93780 0.77866 1.48887 1.06466 1.39210 1.15799 1.28654 0.93005 0.96191 0.93769 1.74952 1.11299 1.20498 1.12377 1.78633 0.98027 1.14871 1.18937 1.78802 1.20817 1.14975 0.94867 1.21368 0.99499 0.92676 0.85820 1.21521 0.99507 0.94327 0.95449 0.92797 1.20872 0.95931 0.94804 0.85232 1.42651 1.57024 1.37385 1.01881 1.19637 1.22364 1.10611 0.85074 0.90534 1.25599 1.00592 0.99029 1.01714 1.69840 1.37224 1.25852 1.29095 0.85140 0.76655 0.78210 0.79757 1.21457 1.22267 1.19243 0.93549 0.90344 0.92488 0.91760 0.87464 0.87115 0.89407 0.85801 0.85501 0.83782 0.87108 0.70250 0.92779 0.91192 0.96114 0.95391 0.79656 0.94096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.11 71.98 0.58 -2.07 16 2 C -0.08 -1.58 2.71 -10.77 -0.03 -1.61 16 3 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.12 -1.60 5.63 30.67 0.17 -1.43 16 5 C 0.10 1.23 5.87 86.36 0.51 1.74 16 6 N -0.60 -13.28 2.97 -818.95 -2.43 -15.72 16 7 C 0.51 11.64 7.70 87.65 0.67 12.32 16 8 O -0.58 -19.39 15.39 -3.04 -0.05 -19.44 16 9 C -0.14 -1.68 4.19 29.85 0.13 -1.56 16 10 C 0.13 1.50 5.77 86.38 0.50 2.00 16 11 N -0.30 -4.22 3.44 -351.80 -1.21 -5.43 16 12 C 0.18 2.19 12.79 180.27 2.31 4.50 16 13 N -0.34 -7.17 12.36 -60.30 -0.75 -7.92 16 14 N -0.11 -2.71 13.43 37.01 0.50 -2.21 16 15 N -0.11 -2.21 13.08 37.02 0.48 -1.73 16 16 C 0.13 3.97 5.05 86.36 0.44 4.41 16 17 C -0.09 -2.62 2.15 -10.72 -0.02 -2.65 16 18 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 19 C 0.16 6.08 5.19 86.38 0.45 6.53 16 20 N -0.75 -38.25 5.38 -343.45 -1.85 -40.09 16 21 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 22 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 23 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 24 N -0.97 -60.75 13.06 21.65 0.28 -60.47 16 25 Si 0.97 46.59 29.55 68.60 2.03 48.62 16 26 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 27 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 28 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 29 H 0.05 0.99 6.57 -2.39 -0.02 0.98 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.01 4.98 -2.39 -0.01 1.00 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.11 0.77 5.93 -2.38 -0.01 0.75 16 35 H 0.09 0.96 6.70 -2.39 -0.02 0.94 16 36 H 0.12 1.26 7.94 -2.38 -0.02 1.24 16 37 H 0.13 0.98 7.69 -2.39 -0.02 0.96 16 38 H 0.14 1.19 8.04 -2.38 -0.02 1.17 16 39 H 0.11 1.50 8.10 -2.39 -0.02 1.48 16 40 H 0.28 0.19 8.06 -2.91 -0.02 0.16 16 41 H 0.05 2.23 6.21 -2.38 -0.01 2.22 16 42 H 0.07 2.10 6.69 -2.39 -0.02 2.09 16 43 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.03 1.06 6.72 -2.39 -0.02 1.05 16 45 H 0.37 20.73 6.89 -92.71 -0.64 20.09 16 46 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -81.92 366.15 4.38 -77.54 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.37 Total: 21.68 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 7.01 Total: 5.17 kcal Atomic # 7 Polarization: -128.59 SS G_CDS: -4.97 Total: -133.56 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -81.92 4.38 -77.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133204559.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.088 kcal (2) G-P(sol) polarization free energy of solvation -81.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds