Wall clock time and date at job start Fri Apr 10 2020 18:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53187 * 109.31314 * 58.64645 * 4 2 1 6 6 N 1.46921 * 108.77794 * 54.63631 * 5 4 2 7 7 C 1.34775 * 120.63610 * 126.41490 * 6 5 4 8 8 O 1.21279 * 120.00474 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99525 * 359.97365 * 7 6 5 10 10 C 1.52998 * 109.47068 * 180.02562 * 9 7 6 11 11 N 1.46504 * 109.47070 * 180.02562 * 10 9 7 12 12 C 1.34604 * 126.43768 * 124.71164 * 11 10 9 13 13 N 1.31073 * 106.67395 * 179.87240 * 12 11 10 14 14 N 1.28831 * 107.99482 * 0.39384 * 13 12 11 15 15 N 1.28737 * 109.39920 * 359.74353 * 14 13 12 16 16 C 1.46931 * 118.73731 * 306.38846 * 6 5 4 17 17 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 18 18 H 1.08994 * 109.49602 * 181.37331 * 17 2 1 19 19 C 1.53005 * 109.49407 * 61.31095 * 17 2 1 20 20 N 1.46497 * 109.46686 * 174.99639 * 19 17 2 21 21 C 1.36941 * 119.99619 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00239 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99827 * 180.02562 * 21 20 19 24 24 N 1.31615 * 119.99944 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99869 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47042 * 90.00364 * 25 23 21 27 27 H 1.48498 * 109.46985 * 210.00197 * 25 23 21 28 28 H 1.48495 * 109.47224 * 329.99995 * 25 23 21 29 29 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 31 31 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 32 32 H 1.08992 * 109.49694 * 178.60260 * 4 2 1 33 33 H 1.09007 * 109.49236 * 298.69458 * 4 2 1 34 34 H 1.09007 * 109.58834 * 294.84955 * 5 4 2 35 35 H 1.09001 * 109.58662 * 174.42524 * 5 4 2 36 36 H 1.09002 * 109.47351 * 300.00520 * 9 7 6 37 37 H 1.09002 * 109.46897 * 60.00389 * 9 7 6 38 38 H 1.09002 * 109.47234 * 300.00316 * 10 9 7 39 39 H 1.08994 * 109.47036 * 60.00568 * 10 9 7 40 40 H 1.08000 * 126.65837 * 0.02562 * 12 11 10 41 41 H 1.08997 * 109.58885 * 293.82300 * 16 6 5 42 42 H 1.09000 * 109.70405 * 173.46383 * 16 6 5 43 43 H 1.08996 * 109.47305 * 294.99975 * 19 17 2 44 44 H 1.09008 * 109.47037 * 55.00272 * 19 17 2 45 45 H 0.96997 * 120.00098 * 0.02562 * 20 19 17 46 46 H 0.97000 * 119.99925 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 1.4989 -2.1541 1.2643 6 7 1.8619 -2.8090 0.0002 7 6 2.5147 -3.9881 0.0002 8 8 2.8083 -4.5188 -1.0500 9 6 2.8798 -4.6471 1.3054 10 6 3.6088 -5.9628 1.0259 11 7 3.9632 -6.6038 2.2948 12 6 3.6369 -7.8520 2.6785 13 7 4.1504 -8.0249 3.8720 14 7 4.7530 -6.9368 4.2075 15 7 4.6420 -6.0759 3.2567 16 6 1.4992 -2.1542 -1.2642 17 6 2.0399 -0.7210 -1.2500 18 1 3.1295 -0.7427 -1.2384 19 6 1.5571 0.0193 -2.4990 20 7 2.1427 -0.6001 -3.6905 21 6 1.8523 -0.1034 -4.9332 22 1 1.1920 0.7451 -5.0348 23 6 2.4067 -0.6906 -6.0622 24 7 3.2110 -1.7250 -5.9384 25 14 2.0101 -0.0135 -7.7575 26 1 3.0022 1.0310 -8.1179 27 1 2.0641 -1.1126 -8.7545 28 1 0.6486 0.5793 -7.7476 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 3.1292 -0.7431 1.2386 33 1 1.6954 -0.1934 2.1399 34 1 0.4139 -2.1344 1.3673 35 1 1.9373 -2.7018 2.0986 36 1 3.5308 -3.9855 1.8769 37 1 1.9736 -4.8477 1.8770 38 1 2.9581 -6.6245 0.4543 39 1 4.5150 -5.7618 0.4546 40 1 3.0653 -8.5721 2.1118 41 1 0.4143 -2.1345 -1.3674 42 1 1.9358 -2.7012 -2.0998 43 1 0.4702 -0.0368 -2.5573 44 1 1.8647 1.0636 -2.4441 45 1 2.7360 -1.3620 -3.5992 46 1 3.5987 -2.1351 -6.7273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133204560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:07 Heat of formation + Delta-G solvation = 92.308614 kcal Electronic energy + Delta-G solvation = -27502.158420 eV Core-core repulsion = 23657.945042 eV Total energy + Delta-G solvation = -3844.213379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.47518 -40.60569 -38.46102 -36.33104 -35.06748 -33.66292 -32.83462 -32.13159 -31.65869 -29.88598 -27.84767 -26.70484 -25.22192 -24.60404 -24.11356 -23.23903 -22.60678 -21.28366 -19.80558 -18.55463 -18.08568 -17.39595 -17.16472 -16.78006 -16.10689 -16.03157 -15.97428 -15.06061 -14.99558 -14.65428 -14.27984 -13.94825 -13.65865 -13.47682 -13.32238 -13.06702 -12.91179 -12.77587 -12.55630 -12.43637 -12.05928 -11.90704 -11.74288 -11.48347 -11.32562 -11.19386 -11.14714 -10.95844 -10.84115 -10.71929 -10.65372 -10.35930 -10.26579 -10.05202 -9.85935 -9.63455 -8.88357 -8.62026 -6.92387 -5.75427 -3.05120 0.92662 1.58700 1.94967 2.43118 2.86326 3.43195 3.48055 3.50082 3.80990 3.89802 4.09864 4.22164 4.43339 4.53317 4.60173 4.72664 4.73817 4.83294 4.94077 5.07956 5.11460 5.14448 5.17547 5.23426 5.40594 5.45466 5.54392 5.59624 5.61302 5.72345 5.78987 5.80351 5.86599 5.95101 6.06549 6.24585 6.27047 6.28125 6.46463 6.52530 6.71576 6.83170 7.28844 7.69575 7.99940 8.29039 8.42440 9.53590 10.11005 10.45076 11.46874 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.002776 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.722600 B =10083.827845 C =11565.416228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.130 4.130 5 C 0.103 3.897 6 N -0.605 5.605 7 C 0.517 3.483 8 O -0.530 6.530 9 C -0.155 4.155 10 C 0.129 3.871 11 N -0.307 5.307 12 C 0.162 3.838 13 N -0.310 5.310 14 N -0.078 5.078 15 N -0.092 5.092 16 C 0.119 3.881 17 C -0.102 4.102 18 H 0.074 0.926 19 C 0.160 3.840 20 N -0.733 5.733 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.930 5.930 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.235 0.765 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.023 0.977 44 H 0.021 0.979 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.680 -5.834 19.454 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.105 4.105 3 H 0.093 0.907 4 C -0.168 4.168 5 C -0.020 4.020 6 N -0.338 5.338 7 C 0.303 3.697 8 O -0.407 6.407 9 C -0.196 4.196 10 C 0.007 3.993 11 N -0.109 5.109 12 C -0.137 4.137 13 N -0.159 5.159 14 N -0.073 5.073 15 N -0.079 5.079 16 C -0.002 4.002 17 C -0.122 4.122 18 H 0.092 0.908 19 C 0.032 3.968 20 N -0.378 5.378 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.578 5.578 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.143 0.857 39 H 0.137 0.863 40 H 0.251 0.749 41 H 0.088 0.912 42 H 0.123 0.877 43 H 0.041 0.959 44 H 0.039 0.961 45 H 0.218 0.782 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.878 -5.635 19.888 21.032 hybrid contribution -0.537 0.029 -1.850 1.927 sum -4.415 -5.606 18.038 19.398 Atomic orbital electron populations 1.21990 0.95197 1.01921 1.01908 1.21083 0.96026 0.99513 0.93830 0.90713 1.21946 1.01282 0.94887 0.98659 1.21828 1.00596 0.94036 0.85546 1.48133 1.56825 1.20671 1.08133 1.20031 0.78112 0.81387 0.90142 1.90818 1.53498 1.63310 1.33057 1.21926 1.02901 0.96626 0.98160 1.22071 1.03625 0.95072 0.78496 1.48856 1.34526 1.11539 1.15954 1.27798 1.02401 0.88663 0.94821 1.75010 1.11781 1.18618 1.10453 1.78653 1.15824 0.94834 1.17960 1.78886 1.11891 1.22825 0.94254 1.21796 1.00047 0.93053 0.85296 1.21689 1.00910 0.94306 0.95246 0.90778 1.20683 0.95982 0.94780 0.85331 1.42414 1.56880 1.37662 1.00825 1.19194 1.23367 1.10990 0.83767 0.91245 1.24752 1.00017 0.98282 0.97829 1.69668 1.35439 1.24142 1.28558 0.86211 0.77771 0.77788 0.84527 1.21756 1.21775 1.20798 0.92514 0.93098 0.91717 0.91359 0.90713 0.90823 0.90216 0.86973 0.88026 0.85673 0.86324 0.74850 0.91203 0.87748 0.95929 0.96135 0.78153 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.11 37.16 0.30 -1.24 16 2 C -0.09 -0.94 2.71 -90.57 -0.25 -1.19 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.13 -1.11 5.62 -26.61 -0.15 -1.26 16 5 C 0.10 0.83 5.87 -3.72 -0.02 0.81 16 6 N -0.60 -6.96 2.97 -172.77 -0.51 -7.47 16 7 C 0.52 6.05 7.70 -10.99 -0.08 5.96 16 8 O -0.53 -8.51 15.40 5.56 0.09 -8.43 16 9 C -0.16 -1.13 4.19 -27.88 -0.12 -1.25 16 10 C 0.13 0.87 5.77 -4.04 -0.02 0.84 16 11 N -0.31 -2.48 3.44 -62.55 -0.22 -2.69 16 12 C 0.16 1.15 12.79 -90.38 -1.16 0.00 16 13 N -0.31 -3.43 12.36 29.59 0.37 -3.06 16 14 N -0.08 -1.00 13.43 60.35 0.81 -0.19 16 15 N -0.09 -1.03 13.07 60.35 0.79 -0.24 16 16 C 0.12 1.78 5.05 -3.71 -0.02 1.76 16 17 C -0.10 -1.52 2.15 -90.49 -0.19 -1.71 16 18 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 19 C 0.16 3.04 5.19 -4.04 -0.02 3.02 16 20 N -0.73 -18.21 5.38 -59.91 -0.32 -18.54 16 21 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 25 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H 0.06 0.56 4.98 -51.93 -0.26 0.31 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.74 6.58 -51.92 -0.34 0.40 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.07 0.54 6.69 -51.92 -0.35 0.19 16 35 H 0.08 0.47 5.93 -51.93 -0.31 0.17 16 36 H 0.11 0.79 7.69 -51.93 -0.40 0.39 16 37 H 0.10 0.56 7.94 -51.93 -0.41 0.14 16 38 H 0.13 0.61 8.04 -51.93 -0.42 0.19 16 39 H 0.12 0.90 8.10 -51.93 -0.42 0.48 16 40 H 0.24 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.07 1.01 6.69 -51.93 -0.35 0.67 16 42 H 0.10 2.00 6.22 -51.93 -0.32 1.68 16 43 H 0.02 0.43 6.73 -51.93 -0.35 0.08 16 44 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 45 H 0.38 10.22 6.90 -40.82 -0.28 9.94 16 46 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 366.15 15.07 5.52 5.52 Total: -1.00 -35.59 366.15 -6.47 -42.06 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.71 Total: 4.83 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -1.98 Total: -1.58 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 1.64 Total: -59.76 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.59 -6.47 -42.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133204560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.364 kcal (2) G-P(sol) polarization free energy of solvation -35.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds