Wall clock time and date at job start Fri Apr 10 2020 18:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53187 * 109.31314 * 58.64645 * 4 2 1 6 6 N 1.46921 * 108.77794 * 54.63631 * 5 4 2 7 7 C 1.34775 * 120.63610 * 126.41490 * 6 5 4 8 8 O 1.21279 * 120.00474 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99525 * 359.97365 * 7 6 5 10 10 C 1.52998 * 109.47068 * 180.02562 * 9 7 6 11 11 N 1.46504 * 109.47070 * 180.02562 * 10 9 7 12 12 C 1.34604 * 126.43768 * 124.71164 * 11 10 9 13 13 N 1.31073 * 106.67395 * 179.87240 * 12 11 10 14 14 N 1.28831 * 107.99482 * 0.39384 * 13 12 11 15 15 N 1.28737 * 109.39920 * 359.74353 * 14 13 12 16 16 C 1.46931 * 118.73731 * 306.38846 * 6 5 4 17 17 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 18 18 H 1.08994 * 109.49602 * 181.37331 * 17 2 1 19 19 C 1.53005 * 109.49407 * 61.31095 * 17 2 1 20 20 N 1.46497 * 109.46686 * 174.99639 * 19 17 2 21 21 C 1.36941 * 119.99619 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00239 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99827 * 180.02562 * 21 20 19 24 24 N 1.31615 * 119.99944 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99869 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47042 * 90.00364 * 25 23 21 27 27 H 1.48498 * 109.46985 * 210.00197 * 25 23 21 28 28 H 1.48495 * 109.47224 * 329.99995 * 25 23 21 29 29 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 31 31 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 32 32 H 1.08992 * 109.49694 * 178.60260 * 4 2 1 33 33 H 1.09007 * 109.49236 * 298.69458 * 4 2 1 34 34 H 1.09007 * 109.58834 * 294.84955 * 5 4 2 35 35 H 1.09001 * 109.58662 * 174.42524 * 5 4 2 36 36 H 1.09002 * 109.47351 * 300.00520 * 9 7 6 37 37 H 1.09002 * 109.46897 * 60.00389 * 9 7 6 38 38 H 1.09002 * 109.47234 * 300.00316 * 10 9 7 39 39 H 1.08994 * 109.47036 * 60.00568 * 10 9 7 40 40 H 1.08000 * 126.65837 * 0.02562 * 12 11 10 41 41 H 1.08997 * 109.58885 * 293.82300 * 16 6 5 42 42 H 1.09000 * 109.70405 * 173.46383 * 16 6 5 43 43 H 1.08996 * 109.47305 * 294.99975 * 19 17 2 44 44 H 1.09008 * 109.47037 * 55.00272 * 19 17 2 45 45 H 0.96997 * 120.00098 * 0.02562 * 20 19 17 46 46 H 0.97000 * 119.99925 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 1.4989 -2.1541 1.2643 6 7 1.8619 -2.8090 0.0002 7 6 2.5147 -3.9881 0.0002 8 8 2.8083 -4.5188 -1.0500 9 6 2.8798 -4.6471 1.3054 10 6 3.6088 -5.9628 1.0259 11 7 3.9632 -6.6038 2.2948 12 6 3.6369 -7.8520 2.6785 13 7 4.1504 -8.0249 3.8720 14 7 4.7530 -6.9368 4.2075 15 7 4.6420 -6.0759 3.2567 16 6 1.4992 -2.1542 -1.2642 17 6 2.0399 -0.7210 -1.2500 18 1 3.1295 -0.7427 -1.2384 19 6 1.5571 0.0193 -2.4990 20 7 2.1427 -0.6001 -3.6905 21 6 1.8523 -0.1034 -4.9332 22 1 1.1920 0.7451 -5.0348 23 6 2.4067 -0.6906 -6.0622 24 7 3.2110 -1.7250 -5.9384 25 14 2.0101 -0.0135 -7.7575 26 1 3.0022 1.0310 -8.1179 27 1 2.0641 -1.1126 -8.7545 28 1 0.6486 0.5793 -7.7476 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 3.1292 -0.7431 1.2386 33 1 1.6954 -0.1934 2.1399 34 1 0.4139 -2.1344 1.3673 35 1 1.9373 -2.7018 2.0986 36 1 3.5308 -3.9855 1.8769 37 1 1.9736 -4.8477 1.8770 38 1 2.9581 -6.6245 0.4543 39 1 4.5150 -5.7618 0.4546 40 1 3.0653 -8.5721 2.1118 41 1 0.4143 -2.1345 -1.3674 42 1 1.9358 -2.7012 -2.0998 43 1 0.4702 -0.0368 -2.5573 44 1 1.8647 1.0636 -2.4441 45 1 2.7360 -1.3620 -3.5992 46 1 3.5987 -2.1351 -6.7273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133204560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:06 Heat of formation + Delta-G solvation = 67.394729 kcal Electronic energy + Delta-G solvation = -27503.238767 eV Core-core repulsion = 23657.945042 eV Total energy + Delta-G solvation = -3845.293726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -45.17551 -41.56545 -39.48181 -37.04425 -36.64651 -34.93486 -33.57044 -33.47527 -32.61455 -31.37156 -28.75323 -27.83784 -26.48438 -25.46483 -24.89777 -24.78284 -23.33487 -22.57723 -20.83672 -19.49537 -18.97570 -18.88224 -18.09069 -17.67414 -16.97866 -16.85220 -16.75823 -16.71421 -15.98323 -15.70935 -15.46193 -15.27999 -14.89683 -14.57360 -14.39671 -14.19934 -14.00307 -13.77117 -13.66265 -13.20105 -13.04219 -12.93813 -12.87524 -12.63826 -12.52413 -12.42354 -12.20153 -12.15090 -12.00479 -11.90987 -11.86662 -11.72318 -11.38766 -11.33755 -11.21537 -10.93299 -10.86875 -9.60247 -9.00341 -7.95111 -5.24917 0.27628 0.97157 1.23092 1.45402 1.47603 1.52635 1.56065 1.98857 2.54934 3.22696 3.36808 3.38002 3.51869 3.55903 3.72034 3.81636 3.83779 3.88853 4.08513 4.18106 4.23608 4.31402 4.34555 4.40987 4.47721 4.52858 4.57594 4.61484 4.71966 4.78861 4.79507 4.85347 4.92814 4.99857 5.10573 5.18794 5.23119 5.26101 5.31359 5.41107 5.47829 5.50624 5.61279 6.25993 6.38602 7.08704 7.31800 7.56829 8.08459 8.30299 9.28206 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.002776 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.722600 B =10083.827845 C =11565.416228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 H 0.075 0.925 4 C -0.125 4.125 5 C 0.098 3.902 6 N -0.604 5.604 7 C 0.513 3.487 8 O -0.583 6.583 9 C -0.140 4.140 10 C 0.130 3.870 11 N -0.302 5.302 12 C 0.183 3.817 13 N -0.343 5.343 14 N -0.111 5.111 15 N -0.109 5.109 16 C 0.130 3.870 17 C -0.090 4.090 18 H 0.050 0.950 19 C 0.159 3.841 20 N -0.747 5.747 21 C -0.245 4.245 22 H 0.077 0.923 23 C -0.078 4.078 24 N -0.970 5.970 25 Si 0.974 3.026 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.267 1.267 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.149 0.851 39 H 0.106 0.894 40 H 0.284 0.716 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.030 0.970 44 H 0.020 0.980 45 H 0.371 0.629 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.550 -5.473 21.370 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 H 0.093 0.907 4 C -0.163 4.163 5 C -0.023 4.023 6 N -0.336 5.336 7 C 0.301 3.699 8 O -0.463 6.463 9 C -0.181 4.181 10 C 0.009 3.991 11 N -0.104 5.104 12 C -0.115 4.115 13 N -0.192 5.192 14 N -0.105 5.105 15 N -0.097 5.097 16 C 0.007 3.993 17 C -0.110 4.110 18 H 0.068 0.932 19 C 0.032 3.968 20 N -0.390 5.390 21 C -0.377 4.377 22 H 0.095 0.905 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.803 3.197 26 H -0.214 1.214 27 H -0.223 1.223 28 H -0.192 1.192 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.167 0.833 39 H 0.124 0.876 40 H 0.300 0.700 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.038 0.962 45 H 0.203 0.797 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.782 -5.221 21.871 23.217 hybrid contribution 0.001 -0.049 -2.442 2.442 sum -5.781 -5.270 19.429 20.945 Atomic orbital electron populations 1.21956 0.94009 1.02230 1.02404 1.21068 0.96910 0.99244 0.92757 0.90651 1.21947 1.00843 0.95195 0.98307 1.22164 1.02002 0.93752 0.84374 1.48200 1.56540 1.20725 1.08144 1.20786 0.76962 0.81068 0.91064 1.90801 1.55440 1.64673 1.35394 1.21843 1.04303 0.96473 0.95433 1.22145 1.03535 0.95534 0.77866 1.48896 1.33978 1.11898 1.15627 1.28680 1.00588 0.88568 0.93678 1.74947 1.13019 1.18661 1.12547 1.78633 1.17135 0.95683 1.19038 1.78823 1.12736 1.23274 0.94820 1.21363 0.99626 0.92505 0.85808 1.21534 0.99343 0.94566 0.95534 0.93193 1.20870 0.95983 0.94749 0.85184 1.42661 1.56900 1.37473 1.01943 1.19644 1.22402 1.10581 0.85053 0.90467 1.25614 1.00605 0.98992 1.01777 1.69849 1.37195 1.25908 1.29127 0.85128 0.78148 0.76835 0.79581 1.21429 1.22312 1.19161 0.92270 0.90314 0.93522 0.92175 0.87408 0.89008 0.87159 0.86230 0.85065 0.83338 0.87559 0.70038 0.90830 0.92833 0.95177 0.96230 0.79713 0.94111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.11 71.98 0.58 -2.01 16 2 C -0.08 -1.62 2.71 -10.76 -0.03 -1.65 16 3 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.12 -1.73 5.62 30.67 0.17 -1.56 16 5 C 0.10 1.23 5.87 86.36 0.51 1.74 16 6 N -0.60 -13.27 2.97 -818.91 -2.43 -15.70 16 7 C 0.51 11.64 7.70 87.66 0.67 12.31 16 8 O -0.58 -19.40 15.40 -3.03 -0.05 -19.44 16 9 C -0.14 -1.69 4.19 29.85 0.12 -1.56 16 10 C 0.13 1.50 5.77 86.38 0.50 2.00 16 11 N -0.30 -4.23 3.44 -351.81 -1.21 -5.44 16 12 C 0.18 2.11 12.79 180.27 2.31 4.41 16 13 N -0.34 -7.11 12.36 -60.29 -0.74 -7.86 16 14 N -0.11 -2.73 13.43 37.01 0.50 -2.24 16 15 N -0.11 -2.30 13.07 37.02 0.48 -1.82 16 16 C 0.13 3.98 5.05 86.36 0.44 4.42 16 17 C -0.09 -2.73 2.15 -10.71 -0.02 -2.75 16 18 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 19 C 0.16 6.16 5.19 86.38 0.45 6.61 16 20 N -0.75 -38.59 5.38 -343.44 -1.85 -40.43 16 21 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 22 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 23 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 24 N -0.97 -61.22 13.06 21.65 0.28 -60.94 16 25 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 26 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 27 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 29 H 0.06 1.01 4.98 -2.39 -0.01 1.00 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.98 6.58 -2.38 -0.02 0.97 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.09 0.91 6.69 -2.38 -0.02 0.89 16 35 H 0.11 0.78 5.93 -2.39 -0.01 0.77 16 36 H 0.12 1.35 7.69 -2.39 -0.02 1.33 16 37 H 0.13 0.87 7.94 -2.39 -0.02 0.85 16 38 H 0.15 1.06 8.04 -2.39 -0.02 1.04 16 39 H 0.11 1.56 8.10 -2.39 -0.02 1.54 16 40 H 0.28 -0.11 8.06 -2.91 -0.02 -0.14 16 41 H 0.07 2.15 6.69 -2.39 -0.02 2.14 16 42 H 0.05 2.21 6.22 -2.39 -0.01 2.20 16 43 H 0.03 1.14 6.73 -2.39 -0.02 1.13 16 44 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.37 20.94 6.90 -92.71 -0.64 20.30 16 46 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -82.95 366.15 4.38 -78.57 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.37 Total: 21.69 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 7.01 Total: 4.83 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -4.97 Total: -134.42 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -82.95 4.38 -78.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133204560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.961 kcal (2) G-P(sol) polarization free energy of solvation -82.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds