Wall clock time and date at job start Fri Apr 10 2020 18:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34948 * 126.03439 * 2 1 4 4 C 1.35325 * 107.74622 * 179.97438 * 3 2 1 5 5 C 1.50694 * 126.04124 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47203 * 90.00178 * 5 4 3 7 7 O 1.21281 * 120.00051 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00023 * 180.02562 * 6 5 4 9 9 C 1.46508 * 119.99754 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46878 * 180.02562 * 9 8 6 11 11 H 1.09000 * 108.57443 * 57.93836 * 10 9 8 12 12 C 1.47479 * 108.44073 * 175.91682 * 10 9 8 13 13 N 1.50120 * 106.48920 * 177.92732 * 12 10 9 14 14 C 1.36940 * 120.63606 * 111.37035 * 13 12 10 15 15 H 1.07996 * 119.99829 * 155.83039 * 14 13 12 16 16 C 1.38808 * 119.99859 * 335.83018 * 14 13 12 17 17 N 1.31619 * 120.00289 * 340.44450 * 16 14 13 18 18 Si 1.86805 * 120.00013 * 160.44216 * 16 14 13 19 19 H 1.48503 * 109.47046 * 269.99946 * 18 16 14 20 20 H 1.48497 * 109.46796 * 29.99838 * 18 16 14 21 21 H 1.48492 * 109.47003 * 149.99903 * 18 16 14 22 22 C 1.43420 * 118.72677 * 291.10186 * 13 12 10 23 23 C 1.55324 * 116.24469 * 89.62528 * 22 13 12 24 24 C 1.55187 * 108.87168 * 319.46354 * 23 22 13 25 25 O 1.39646 * 110.56791 * 322.13814 * 24 23 22 26 26 C 1.39869 * 107.91838 * 0.26637 * 4 3 2 27 27 N 1.30841 * 108.19888 * 359.55085 * 26 4 3 28 28 H 1.09005 * 109.47066 * 90.00223 * 1 2 3 29 29 H 1.09000 * 109.47333 * 209.99680 * 1 2 3 30 30 H 1.09000 * 109.47292 * 330.00458 * 1 2 3 31 31 H 1.07996 * 126.12953 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.47249 * 330.00082 * 5 4 3 33 33 H 1.09002 * 109.47115 * 210.00624 * 5 4 3 34 34 H 0.96991 * 119.99992 * 359.97438 * 8 6 5 35 35 H 1.08997 * 109.47097 * 59.99732 * 9 8 6 36 36 H 1.09000 * 109.46898 * 299.99708 * 9 8 6 37 37 H 1.09001 * 110.11276 * 58.71790 * 12 10 9 38 38 H 1.09004 * 110.15187 * 297.16028 * 12 10 9 39 39 H 0.97000 * 120.00002 * 180.02562 * 17 16 14 40 40 H 1.09010 * 108.12835 * 211.38518 * 22 13 12 41 41 H 1.08997 * 108.12953 * 328.07519 * 22 13 12 42 42 H 1.08999 * 109.57226 * 79.27564 * 23 22 13 43 43 H 1.09002 * 109.57784 * 199.64258 * 23 22 13 44 44 H 1.09000 * 109.26051 * 82.42606 * 24 23 22 45 45 H 1.09001 * 109.25552 * 201.86337 * 24 23 22 46 46 H 1.07993 * 125.89855 * 179.73632 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5454 0.0002 6 6 5.1758 1.8392 1.4209 7 8 4.5356 1.3799 2.3429 8 7 6.2519 2.6125 1.6669 9 6 6.6487 2.8977 3.0481 10 6 7.8907 3.7910 3.0477 11 1 7.6612 4.7046 2.4992 12 6 8.2116 4.1444 4.4431 13 7 9.4614 4.9748 4.3958 14 6 9.4264 6.3070 4.7109 15 1 10.3214 6.8043 5.0543 16 6 8.2405 7.0181 4.5890 17 7 7.2698 6.5540 3.8309 18 14 8.0223 8.6337 5.5008 19 1 7.4373 8.3711 6.8403 20 1 9.3423 9.2954 5.6583 21 1 7.1138 9.5190 4.7288 22 6 10.6937 4.3448 4.0198 23 6 11.0272 4.3388 2.5028 24 6 9.7285 4.0482 1.7045 25 8 8.9419 3.1076 2.3729 26 6 3.5347 -0.7320 -0.0052 27 7 2.2892 -1.1327 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.9281 2.1193 0.0004 32 1 4.5443 2.4799 -0.5143 33 1 5.5822 1.0339 -0.5132 34 1 6.7641 2.9796 0.9295 35 1 6.8729 1.9631 3.5620 36 1 5.8343 3.4086 3.5619 37 1 8.3864 3.2412 5.0278 38 1 7.3972 4.7215 4.8812 39 1 6.4413 7.0511 3.7454 40 1 11.5060 4.8490 4.5436 41 1 10.6638 3.3102 4.3615 42 1 11.4242 5.3115 2.2124 43 1 11.7651 3.5642 2.2941 44 1 9.1630 4.9728 1.5889 45 1 9.9908 3.6624 0.7194 46 1 4.4054 -1.3708 -0.0103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149363497.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:56 Heat of formation + Delta-G solvation = 9.070314 kcal Electronic energy + Delta-G solvation = -27642.689340 eV Core-core repulsion = 23762.573727 eV Total energy + Delta-G solvation = -3880.115613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.13102 -40.88036 -39.97313 -36.76925 -35.84511 -34.50772 -33.81524 -33.05415 -32.48192 -30.34184 -29.21079 -27.34893 -27.03956 -26.14124 -24.16664 -22.35911 -22.00138 -21.82871 -21.28197 -20.75556 -18.91586 -18.06026 -17.74337 -17.58391 -16.84425 -16.58811 -16.33048 -16.18219 -16.00365 -15.55153 -15.45275 -15.26982 -14.80505 -14.38705 -14.28944 -14.12855 -14.03034 -13.71249 -13.53094 -13.38846 -13.27429 -13.14816 -12.93939 -12.64839 -12.57317 -12.46685 -12.25171 -11.91012 -11.73721 -11.52526 -11.35448 -11.15637 -10.85631 -10.54076 -10.32057 -10.23000 -9.93821 -9.28493 -8.69843 -7.87864 -5.28023 0.98638 1.48556 1.52916 1.58381 1.71010 1.80049 1.84292 2.51021 2.58326 3.16672 3.29213 3.54226 3.67528 4.02299 4.07356 4.21134 4.29805 4.32999 4.39367 4.41693 4.44858 4.47707 4.55292 4.62325 4.68266 4.76927 4.82057 4.83390 4.84848 4.92407 5.03066 5.11685 5.21081 5.21909 5.22439 5.37126 5.43643 5.49898 5.60059 5.70316 5.72690 6.17677 6.38076 6.56708 6.75348 6.76496 7.12591 7.44736 7.84850 8.37913 9.18109 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.002813 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.474538 B = 9951.162967 C =11050.688273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.384 5.384 3 C 0.064 3.936 4 C -0.236 4.236 5 C -0.048 4.048 6 C 0.506 3.494 7 O -0.590 6.590 8 N -0.710 5.710 9 C 0.135 3.865 10 C 0.082 3.918 11 H 0.086 0.914 12 C 0.144 3.856 13 N -0.602 5.602 14 C -0.263 4.263 15 H 0.062 0.938 16 C -0.036 4.036 17 N -0.915 5.915 18 Si 0.958 3.042 19 H -0.292 1.292 20 H -0.277 1.277 21 H -0.294 1.294 22 C 0.154 3.846 23 C -0.166 4.166 24 C 0.068 3.932 25 O -0.366 6.366 26 C 0.049 3.951 27 N -0.339 5.339 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.198 0.802 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.411 0.589 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.021 0.979 38 H 0.077 0.923 39 H 0.251 0.749 40 H 0.029 0.971 41 H 0.033 0.967 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.037 0.963 45 H 0.089 0.911 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 -8.467 -12.556 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.166 5.166 3 C -0.083 4.083 4 C -0.248 4.248 5 C -0.088 4.088 6 C 0.294 3.706 7 O -0.470 6.470 8 N -0.362 5.362 9 C 0.009 3.991 10 C 0.023 3.977 11 H 0.104 0.896 12 C 0.019 3.981 13 N -0.324 5.324 14 C -0.393 4.393 15 H 0.080 0.920 16 C -0.232 4.232 17 N -0.561 5.561 18 Si 0.788 3.212 19 H -0.219 1.219 20 H -0.202 1.202 21 H -0.220 1.220 22 C 0.026 3.974 23 C -0.206 4.206 24 C -0.009 4.009 25 O -0.285 6.285 26 C -0.137 4.137 27 N -0.161 5.161 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.215 0.785 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.247 0.753 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.039 0.961 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.056 0.944 45 H 0.107 0.893 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -8.864 -9.924 -11.891 17.845 hybrid contribution 0.615 2.084 0.610 2.257 sum -8.248 -7.840 -11.281 16.024 Atomic orbital electron populations 1.22155 0.72232 1.05553 1.04678 1.48743 1.07883 1.03432 1.56538 1.22781 0.90841 0.94393 1.00250 1.19710 0.94461 0.93662 1.16993 1.19919 0.96140 1.01356 0.91433 1.21478 0.79182 0.76988 0.92909 1.90667 1.54821 1.53213 1.48306 1.45858 1.30053 1.51701 1.08561 1.21272 0.95582 0.98254 0.83956 1.21827 0.85123 0.94136 0.96623 0.89594 1.20806 0.90452 0.92089 0.94774 1.44221 1.04466 1.06007 1.77672 1.19398 0.96588 0.86104 1.37220 0.92001 1.25448 0.97991 1.00386 0.99384 1.69996 1.06713 1.40682 1.38694 0.85419 0.77322 0.80328 0.78181 1.21943 1.20176 1.22049 1.20483 0.88005 0.95479 0.93442 1.23500 0.98058 1.00699 0.98386 1.22403 0.92042 0.91725 0.94779 1.87520 1.42290 1.31844 1.66811 1.24075 0.95439 0.95299 0.98843 1.77226 1.02462 1.09907 1.26485 0.89029 0.89500 0.87398 0.78478 0.85686 0.85648 0.75304 0.93066 0.92544 0.96055 0.90454 0.93958 0.95221 0.94845 0.92760 0.90372 0.94429 0.89327 0.78962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.16 11.47 127.77 1.47 2.63 16 2 N -0.38 -8.51 4.01 -369.56 -1.48 -9.99 16 3 C 0.06 1.36 11.40 83.54 0.95 2.31 16 4 C -0.24 -5.49 4.59 -20.14 -0.09 -5.59 16 5 C -0.05 -0.92 6.18 29.10 0.18 -0.74 16 6 C 0.51 14.90 7.82 87.65 0.69 15.59 16 7 O -0.59 -23.08 16.03 -3.03 -0.05 -23.13 16 8 N -0.71 -21.05 5.43 -463.05 -2.52 -23.57 16 9 C 0.13 4.97 5.23 86.38 0.45 5.42 16 10 C 0.08 3.26 1.96 28.87 0.06 3.32 16 11 H 0.09 3.85 5.27 -2.39 -0.01 3.84 16 12 C 0.14 6.57 4.74 83.95 0.40 6.96 16 13 N -0.60 -28.76 2.60 -705.07 -1.84 -30.60 16 14 C -0.26 -13.70 9.62 84.03 0.81 -12.89 16 15 H 0.06 3.24 7.88 -2.91 -0.02 3.22 16 16 C -0.04 -1.84 4.91 84.86 0.42 -1.42 16 17 N -0.92 -47.71 9.59 21.65 0.21 -47.51 16 18 Si 0.96 42.80 29.60 68.60 2.03 44.83 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 C 0.15 6.32 5.33 87.75 0.47 6.78 16 23 C -0.17 -5.72 6.75 32.14 0.22 -5.50 16 24 C 0.07 2.33 6.38 72.73 0.46 2.79 16 25 O -0.37 -13.42 9.53 -137.25 -1.31 -14.73 16 26 C 0.05 1.23 11.96 85.24 1.02 2.25 16 27 N -0.34 -9.27 12.58 -57.03 -0.72 -9.99 16 28 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.20 2.85 8.06 -2.91 -0.02 2.83 16 32 H 0.13 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.41 10.23 8.32 -92.72 -0.77 9.46 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 3.95 6.02 -2.39 -0.01 3.93 16 39 H 0.25 12.91 8.31 -92.71 -0.77 12.13 16 40 H 0.03 1.21 7.96 -2.38 -0.02 1.19 16 41 H 0.03 1.34 7.97 -2.39 -0.02 1.32 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.04 1.49 6.66 -2.39 -0.02 1.47 16 45 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.19 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -70.01 373.12 2.03 -67.98 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.21 Total: 24.78 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 7.49 Total: 21.91 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -6.34 Total: -121.65 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -1.36 Total: -37.85 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -70.01 2.03 -67.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149363497.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.047 kcal (2) G-P(sol) polarization free energy of solvation -70.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds