Wall clock time and date at job start Fri Apr 10 2020 18:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40088 * 126.03346 * 2 1 4 4 C 1.30843 * 108.20502 * 180.02562 * 3 2 1 5 5 C 1.39873 * 108.20201 * 0.02562 * 4 3 2 6 6 C 1.34943 * 126.04005 * 180.02562 * 2 1 3 7 7 C 1.50700 * 126.12734 * 359.94515 * 6 2 1 8 8 C 1.50698 * 109.47487 * 265.03137 * 7 6 2 9 9 O 1.21284 * 119.99564 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00181 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00121 * 180.02562 * 10 8 7 12 12 C 1.52990 * 109.47455 * 179.97438 * 11 10 8 13 13 H 1.09006 * 109.46979 * 305.00209 * 12 11 10 14 14 C 1.54806 * 109.47257 * 185.00263 * 12 11 10 15 15 N 1.45121 * 109.53765 * 172.10614 * 14 12 11 16 16 C 1.36936 * 118.76187 * 269.29361 * 15 14 12 17 17 H 1.07996 * 119.99881 * 26.09179 * 16 15 14 18 18 C 1.38818 * 119.99932 * 206.10035 * 16 15 14 19 19 N 1.31614 * 120.00243 * 15.46427 * 18 16 15 20 20 Si 1.86802 * 119.99805 * 195.46743 * 18 16 15 21 21 H 1.48499 * 109.47271 * 59.99726 * 20 18 16 22 22 H 1.48500 * 109.46992 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46857 * 299.99728 * 20 18 16 24 24 C 1.47513 * 122.48393 * 89.29274 * 15 14 12 25 25 C 1.53573 * 111.02473 * 318.37572 * 24 15 14 26 26 C 1.51538 * 109.57934 * 320.01582 * 25 24 15 27 27 O 1.38015 * 109.46967 * 64.99354 * 12 11 10 28 28 H 1.08997 * 109.47640 * 90.02303 * 1 2 3 29 29 H 1.09006 * 109.46630 * 210.01866 * 1 2 3 30 30 H 1.08995 * 109.47128 * 330.01019 * 1 2 3 31 31 H 1.07993 * 125.89729 * 179.97438 * 4 3 2 32 32 H 1.07997 * 126.04199 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47013 * 25.03736 * 7 6 2 34 34 H 1.09000 * 109.47351 * 145.03195 * 7 6 2 35 35 H 0.96993 * 120.00202 * 359.97438 * 10 8 7 36 36 H 1.09009 * 109.47014 * 300.00378 * 11 10 8 37 37 H 1.09000 * 109.46989 * 59.99534 * 11 10 8 38 38 H 1.08993 * 109.46094 * 292.12938 * 14 12 11 39 39 H 1.09001 * 109.45727 * 52.09104 * 14 12 11 40 40 H 0.96999 * 120.00455 * 180.02562 * 19 18 16 41 41 H 1.08995 * 109.16976 * 197.97084 * 24 15 14 42 42 H 1.09004 * 109.12096 * 78.74212 * 24 15 14 43 43 H 1.09001 * 109.45078 * 199.98273 * 25 24 15 44 44 H 1.09004 * 109.45666 * 80.05278 * 25 24 15 45 45 H 1.08998 * 109.59020 * 331.61628 * 26 25 24 46 46 H 1.08999 * 109.58899 * 211.18432 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1329 0.0000 4 6 3.5347 0.7323 -0.0006 5 6 3.5438 -0.6664 -0.0015 6 6 2.2590 -1.0912 -0.0005 7 6 1.7975 -2.5258 0.0000 8 6 1.7618 -3.0416 1.4155 9 8 2.0795 -2.3155 2.3336 10 7 1.3770 -4.3096 1.6612 11 6 1.3419 -4.8108 3.0374 12 6 0.8735 -6.2673 3.0379 13 1 -0.0849 -6.3409 2.5239 14 6 0.7152 -6.7579 4.4976 15 7 0.0958 -8.0703 4.5040 16 6 -1.2691 -8.1544 4.5762 17 1 -1.8801 -7.3409 4.2141 18 6 -1.8672 -9.2853 5.1150 19 7 -1.1531 -10.1324 5.8254 20 14 -3.6858 -9.6048 4.8317 21 1 -3.9469 -9.7205 3.3745 22 1 -4.0773 -10.8685 5.5062 23 1 -4.4787 -8.4796 5.3889 24 6 0.8810 -9.3172 4.4357 25 6 2.0280 -9.1912 3.4223 26 6 1.5456 -8.4355 2.2006 27 8 1.8055 -7.0505 2.3877 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8899 0.5142 30 1 -0.3633 0.8900 0.5136 31 1 4.4053 1.3712 -0.0011 32 1 4.4212 -1.2962 -0.0018 33 1 0.7995 -2.5865 -0.4341 34 1 2.4874 -3.1296 -0.5894 35 1 1.1227 -4.8901 0.9271 36 1 2.3397 -4.7495 3.4721 37 1 0.6513 -4.2072 3.6264 38 1 1.6960 -6.8170 4.9693 39 1 0.0883 -6.0579 5.0500 40 1 -1.5710 -10.9228 6.2016 41 1 0.2270 -10.1360 4.1360 42 1 1.2955 -9.5326 5.4205 43 1 2.3613 -10.1858 3.1259 44 1 2.8580 -8.6517 3.8787 45 1 0.4746 -8.5925 2.0731 46 1 2.0769 -8.7910 1.3177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149633068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:02 Heat of formation + Delta-G solvation = 24.269252 kcal Electronic energy + Delta-G solvation = -27426.829976 eV Core-core repulsion = 23547.373438 eV Total energy + Delta-G solvation = -3879.456538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.43243 -39.67512 -38.77315 -35.32549 -34.68004 -33.61231 -32.57498 -31.99508 -31.52503 -28.96137 -27.54136 -26.87817 -25.61883 -25.15842 -22.83583 -21.30007 -21.01483 -20.79551 -19.76918 -19.54540 -17.39656 -17.06793 -16.93795 -16.25666 -15.85441 -15.52206 -15.39267 -15.11400 -14.85301 -14.44901 -14.19337 -13.91546 -13.74607 -13.40997 -13.23737 -12.99965 -12.83009 -12.68750 -12.61637 -12.41887 -12.13651 -11.99768 -11.44945 -11.25481 -11.02440 -10.91332 -10.77769 -10.71529 -10.30749 -10.04330 -9.91619 -9.81423 -9.76073 -9.38565 -9.02122 -8.87891 -8.62810 -8.48574 -6.81545 -5.89459 -3.34647 1.66953 2.35634 2.57182 2.70352 3.26186 3.30202 3.36451 3.36503 4.10075 4.20912 4.37943 4.39062 4.69403 4.78264 4.91588 5.01648 5.06377 5.13685 5.20751 5.30029 5.47731 5.53172 5.56029 5.60705 5.64838 5.81539 5.92160 5.97483 5.99308 6.11298 6.20284 6.29609 6.44839 6.52080 6.53736 6.65398 6.69464 6.76902 6.83453 7.29929 7.48958 7.57561 7.58004 7.70635 8.13962 8.19173 8.33545 9.11348 9.76056 10.22189 11.18043 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021027 B = 0.002550 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.330850 B =10978.183785 C =11781.108377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.368 5.368 3 N -0.298 5.298 4 C 0.046 3.954 5 C -0.258 4.258 6 C 0.106 3.894 7 C -0.082 4.082 8 C 0.511 3.489 9 O -0.532 6.532 10 N -0.718 5.718 11 C 0.133 3.867 12 C 0.067 3.933 13 H 0.051 0.949 14 C 0.128 3.872 15 N -0.591 5.591 16 C -0.268 4.268 17 H 0.066 0.934 18 C 0.008 3.992 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.177 3.823 25 C -0.177 4.177 26 C 0.088 3.912 27 O -0.396 6.396 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.183 0.817 32 H 0.146 0.854 33 H 0.104 0.896 34 H 0.121 0.879 35 H 0.403 0.597 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.255 0.745 41 H 0.075 0.925 42 H 0.027 0.973 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 12.053 -14.272 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.150 5.150 3 N -0.120 5.120 4 C -0.139 4.139 5 C -0.287 4.287 6 C -0.022 4.022 7 C -0.123 4.123 8 C 0.295 3.705 9 O -0.409 6.409 10 N -0.370 5.370 11 C 0.009 3.991 12 C 0.005 3.995 13 H 0.069 0.931 14 C -0.002 4.002 15 N -0.313 5.313 16 C -0.397 4.397 17 H 0.083 0.917 18 C -0.192 4.192 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.052 3.948 25 C -0.216 4.216 26 C 0.012 3.988 27 O -0.315 6.315 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.199 0.801 32 H 0.164 0.836 33 H 0.122 0.878 34 H 0.139 0.861 35 H 0.238 0.762 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.329 13.470 -13.519 19.814 hybrid contribution -0.830 -1.511 -0.227 1.739 sum 4.499 11.958 -13.746 18.767 Atomic orbital electron populations 1.21843 0.74590 1.04738 1.03094 1.48391 1.06402 1.03327 1.56920 1.77334 1.01909 1.07759 1.24956 1.23777 0.95186 0.95021 0.99942 1.21177 0.96122 0.95087 1.16312 1.20252 0.91410 0.88953 1.01626 1.20286 1.04630 0.90993 0.96427 1.20271 0.77647 0.82074 0.90517 1.90762 1.47497 1.56587 1.46025 1.45964 1.68098 1.12575 1.10325 1.21441 1.02533 0.92847 0.82278 1.22622 0.91284 0.87871 0.97719 0.93068 1.21405 0.97261 0.88885 0.92621 1.43831 1.03285 0.99205 1.84940 1.19164 0.81932 1.03713 1.34916 0.91653 1.25050 0.97836 0.99141 0.97126 1.70053 1.35507 1.14149 1.34829 0.86374 0.85082 0.77448 0.77864 1.21011 1.21551 1.20804 1.21004 0.90403 0.88822 0.94593 1.22772 1.00872 0.99522 0.98428 1.22015 1.00816 0.79621 0.96319 1.86072 1.47206 1.20754 1.77478 0.90695 0.89694 0.89142 0.80054 0.83650 0.87809 0.86065 0.76244 0.90875 0.90274 0.93797 0.92656 0.93449 0.90621 0.95451 0.92081 0.92370 0.92056 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.79 11.06 59.85 0.66 1.45 16 2 N -0.37 -4.33 4.01 -63.88 -0.26 -4.58 16 3 N -0.30 -3.93 12.58 30.62 0.39 -3.55 16 4 C 0.05 0.52 12.03 -17.36 -0.21 0.32 16 5 C -0.26 -2.94 10.72 -40.01 -0.43 -3.37 16 6 C 0.11 1.19 5.42 -82.26 -0.45 0.75 16 7 C -0.08 -0.70 5.81 -29.04 -0.17 -0.87 16 8 C 0.51 6.28 7.82 -10.99 -0.09 6.20 16 9 O -0.53 -8.97 16.03 5.55 0.09 -8.88 16 10 N -0.72 -8.44 5.49 -60.30 -0.33 -8.77 16 11 C 0.13 1.90 5.34 -4.05 -0.02 1.88 16 12 C 0.07 1.10 2.68 -25.78 -0.07 1.03 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 14 C 0.13 2.53 5.12 -3.83 -0.02 2.51 16 15 N -0.59 -13.88 2.23 -172.02 -0.38 -14.27 16 16 C -0.27 -6.91 9.46 -15.06 -0.14 -7.05 16 17 H 0.07 1.65 7.88 -52.49 -0.41 1.24 16 18 C 0.01 0.20 4.89 -17.43 -0.09 0.12 16 19 N -0.90 -25.16 11.00 55.49 0.61 -24.55 16 20 Si 0.90 20.80 29.58 -169.99 -5.03 15.77 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.18 4.02 4.70 -3.19 -0.02 4.01 16 25 C -0.18 -3.19 5.78 -27.17 -0.16 -3.34 16 26 C 0.09 1.47 6.37 36.42 0.23 1.70 16 27 O -0.40 -6.55 9.38 -26.54 -0.25 -6.80 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.59 7.55 -51.93 -0.39 0.20 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.10 0.61 7.49 -51.93 -0.39 0.22 16 34 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.40 3.89 8.46 -40.82 -0.35 3.54 16 36 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 39 H 0.06 1.10 7.98 -51.93 -0.41 0.69 16 40 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.08 1.91 6.37 -51.93 -0.33 1.57 16 42 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.05 8.01 -51.93 -0.42 0.64 16 45 H 0.06 1.14 7.40 -51.93 -0.38 0.76 16 46 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 375.68 15.07 5.66 5.66 Total: -1.00 -33.59 375.68 -7.74 -41.33 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.29 Total: 3.31 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -0.95 Total: 5.32 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.02 Total: -55.71 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.16 Total: -15.68 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.59 -7.74 -41.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149633068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.600 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds