Wall clock time and date at job start Fri Apr 10 2020 18:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40088 * 126.03346 * 2 1 4 4 C 1.30843 * 108.20502 * 180.02562 * 3 2 1 5 5 C 1.39873 * 108.20201 * 0.02562 * 4 3 2 6 6 C 1.34943 * 126.04005 * 180.02562 * 2 1 3 7 7 C 1.50700 * 126.12734 * 359.94515 * 6 2 1 8 8 C 1.50698 * 109.47487 * 265.03137 * 7 6 2 9 9 O 1.21284 * 119.99564 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00181 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00121 * 180.02562 * 10 8 7 12 12 C 1.52990 * 109.47455 * 179.97438 * 11 10 8 13 13 H 1.09006 * 109.46979 * 305.00209 * 12 11 10 14 14 C 1.54806 * 109.47257 * 185.00263 * 12 11 10 15 15 N 1.45121 * 109.53765 * 172.10614 * 14 12 11 16 16 C 1.36936 * 118.76187 * 269.29361 * 15 14 12 17 17 H 1.07996 * 119.99881 * 26.09179 * 16 15 14 18 18 C 1.38818 * 119.99932 * 206.10035 * 16 15 14 19 19 N 1.31614 * 120.00243 * 15.46427 * 18 16 15 20 20 Si 1.86802 * 119.99805 * 195.46743 * 18 16 15 21 21 H 1.48499 * 109.47271 * 59.99726 * 20 18 16 22 22 H 1.48500 * 109.46992 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46857 * 299.99728 * 20 18 16 24 24 C 1.47513 * 122.48393 * 89.29274 * 15 14 12 25 25 C 1.53573 * 111.02473 * 318.37572 * 24 15 14 26 26 C 1.51538 * 109.57934 * 320.01582 * 25 24 15 27 27 O 1.38015 * 109.46967 * 64.99354 * 12 11 10 28 28 H 1.08997 * 109.47640 * 90.02303 * 1 2 3 29 29 H 1.09006 * 109.46630 * 210.01866 * 1 2 3 30 30 H 1.08995 * 109.47128 * 330.01019 * 1 2 3 31 31 H 1.07993 * 125.89729 * 179.97438 * 4 3 2 32 32 H 1.07997 * 126.04199 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47013 * 25.03736 * 7 6 2 34 34 H 1.09000 * 109.47351 * 145.03195 * 7 6 2 35 35 H 0.96993 * 120.00202 * 359.97438 * 10 8 7 36 36 H 1.09009 * 109.47014 * 300.00378 * 11 10 8 37 37 H 1.09000 * 109.46989 * 59.99534 * 11 10 8 38 38 H 1.08993 * 109.46094 * 292.12938 * 14 12 11 39 39 H 1.09001 * 109.45727 * 52.09104 * 14 12 11 40 40 H 0.96999 * 120.00455 * 180.02562 * 19 18 16 41 41 H 1.08995 * 109.16976 * 197.97084 * 24 15 14 42 42 H 1.09004 * 109.12096 * 78.74212 * 24 15 14 43 43 H 1.09001 * 109.45078 * 199.98273 * 25 24 15 44 44 H 1.09004 * 109.45666 * 80.05278 * 25 24 15 45 45 H 1.08998 * 109.59020 * 331.61628 * 26 25 24 46 46 H 1.08999 * 109.58899 * 211.18432 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1329 0.0000 4 6 3.5347 0.7323 -0.0006 5 6 3.5438 -0.6664 -0.0015 6 6 2.2590 -1.0912 -0.0005 7 6 1.7975 -2.5258 0.0000 8 6 1.7618 -3.0416 1.4155 9 8 2.0795 -2.3155 2.3336 10 7 1.3770 -4.3096 1.6612 11 6 1.3419 -4.8108 3.0374 12 6 0.8735 -6.2673 3.0379 13 1 -0.0849 -6.3409 2.5239 14 6 0.7152 -6.7579 4.4976 15 7 0.0958 -8.0703 4.5040 16 6 -1.2691 -8.1544 4.5762 17 1 -1.8801 -7.3409 4.2141 18 6 -1.8672 -9.2853 5.1150 19 7 -1.1531 -10.1324 5.8254 20 14 -3.6858 -9.6048 4.8317 21 1 -3.9469 -9.7205 3.3745 22 1 -4.0773 -10.8685 5.5062 23 1 -4.4787 -8.4796 5.3889 24 6 0.8810 -9.3172 4.4357 25 6 2.0280 -9.1912 3.4223 26 6 1.5456 -8.4355 2.2006 27 8 1.8055 -7.0505 2.3877 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8899 0.5142 30 1 -0.3633 0.8900 0.5136 31 1 4.4053 1.3712 -0.0011 32 1 4.4212 -1.2962 -0.0018 33 1 0.7995 -2.5865 -0.4341 34 1 2.4874 -3.1296 -0.5894 35 1 1.1227 -4.8901 0.9271 36 1 2.3397 -4.7495 3.4721 37 1 0.6513 -4.2072 3.6264 38 1 1.6960 -6.8170 4.9693 39 1 0.0883 -6.0579 5.0500 40 1 -1.5710 -10.9228 6.2016 41 1 0.2270 -10.1360 4.1360 42 1 1.2955 -9.5326 5.4205 43 1 2.3613 -10.1858 3.1259 44 1 2.8580 -8.6517 3.8787 45 1 0.4746 -8.5925 2.0731 46 1 2.0769 -8.7910 1.3177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149633068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:00 Heat of formation + Delta-G solvation = 0.942433 kcal Electronic energy + Delta-G solvation = -27427.841503 eV Core-core repulsion = 23547.373438 eV Total energy + Delta-G solvation = -3880.468065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.23591 -40.84839 -40.06897 -36.99556 -35.91577 -34.38352 -33.70907 -33.45194 -33.00568 -30.31151 -28.62055 -27.57498 -27.18271 -26.78754 -24.35397 -22.28754 -22.11495 -21.91593 -21.30653 -20.53912 -18.86832 -18.31171 -17.85250 -17.60383 -17.14058 -16.79141 -16.42274 -16.33615 -16.18262 -15.61547 -15.50472 -15.18498 -14.78317 -14.72151 -14.41748 -14.33420 -13.91619 -13.66441 -13.56203 -13.47156 -13.26213 -13.12298 -13.03208 -12.78493 -12.72993 -12.50136 -12.39833 -12.09709 -11.75793 -11.60363 -11.47979 -11.29965 -11.08600 -10.52949 -10.27882 -10.19884 -10.08304 -9.43746 -8.72682 -7.89397 -5.36944 0.85183 1.46884 1.47854 1.54844 1.62332 1.67003 1.87380 2.31577 2.50305 2.77886 3.25989 3.47448 3.56885 3.71419 3.92904 4.09861 4.10288 4.16591 4.23732 4.37408 4.37913 4.39615 4.50981 4.54927 4.59804 4.65449 4.68643 4.75897 4.80135 4.82324 4.87057 4.92266 5.15764 5.20179 5.22208 5.26352 5.42776 5.47367 5.61125 5.75489 5.76135 6.10965 6.35244 6.58266 6.75911 6.76249 7.14040 7.26329 7.86355 8.27675 9.16210 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021027 B = 0.002550 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.330850 B =10978.183785 C =11781.108377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.377 5.377 3 N -0.336 5.336 4 C 0.037 3.963 5 C -0.277 4.277 6 C 0.096 3.904 7 C -0.071 4.071 8 C 0.514 3.486 9 O -0.582 6.582 10 N -0.707 5.707 11 C 0.144 3.856 12 C 0.088 3.912 13 H 0.049 0.951 14 C 0.122 3.878 15 N -0.606 5.606 16 C -0.270 4.270 17 H 0.069 0.931 18 C -0.046 4.046 19 N -0.936 5.936 20 Si 0.965 3.035 21 H -0.274 1.274 22 H -0.297 1.297 23 H -0.278 1.278 24 C 0.185 3.815 25 C -0.165 4.165 26 C 0.092 3.908 27 O -0.390 6.390 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.206 0.794 32 H 0.158 0.842 33 H 0.137 0.863 34 H 0.153 0.847 35 H 0.417 0.583 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.040 0.960 39 H 0.049 0.951 40 H 0.250 0.750 41 H 0.046 0.954 42 H -0.009 1.009 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.041 0.959 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.909 12.372 -16.894 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.160 5.160 3 N -0.158 5.158 4 C -0.147 4.147 5 C -0.306 4.306 6 C -0.033 4.033 7 C -0.112 4.112 8 C 0.300 3.700 9 O -0.462 6.462 10 N -0.360 5.360 11 C 0.019 3.981 12 C 0.026 3.974 13 H 0.067 0.933 14 C -0.006 4.006 15 N -0.328 5.328 16 C -0.400 4.400 17 H 0.087 0.913 18 C -0.242 4.242 19 N -0.581 5.581 20 Si 0.793 3.207 21 H -0.200 1.200 22 H -0.223 1.223 23 H -0.203 1.203 24 C 0.060 3.940 25 C -0.204 4.204 26 C 0.016 3.984 27 O -0.309 6.309 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.223 0.777 32 H 0.176 0.824 33 H 0.155 0.845 34 H 0.170 0.830 35 H 0.254 0.746 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.009 0.991 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.294 13.810 -16.192 21.929 hybrid contribution -0.781 -1.576 0.641 1.872 sum 4.513 12.233 -15.551 20.294 Atomic orbital electron populations 1.22115 0.72997 1.05152 1.04810 1.48717 1.07523 1.03139 1.56594 1.77264 1.02866 1.09200 1.26488 1.24279 0.95539 0.95746 0.99126 1.21526 0.96979 0.95373 1.16747 1.20711 0.91547 0.90043 1.00974 1.20368 1.07409 0.89462 0.93981 1.20855 0.76126 0.81390 0.91587 1.90755 1.49691 1.57782 1.47942 1.45788 1.67789 1.12846 1.09533 1.21132 1.01739 0.91328 0.83921 1.22258 0.91474 0.88875 0.94744 0.93315 1.21580 0.96574 0.87322 0.95163 1.44039 1.02915 1.00534 1.85324 1.19485 0.83259 1.03557 1.33693 0.91289 1.25786 1.01658 0.99319 0.97433 1.70224 1.36967 1.14555 1.36379 0.85380 0.80536 0.76791 0.77960 1.19985 1.22333 1.20335 1.20780 0.91122 0.87930 0.94183 1.22632 0.98614 1.01369 0.97787 1.22073 1.00087 0.79358 0.96844 1.86103 1.47049 1.20794 1.76988 0.88289 0.88665 0.89412 0.77726 0.82412 0.84489 0.82956 0.74581 0.91859 0.90613 0.94153 0.93261 0.94127 0.93503 0.99109 0.89739 0.92226 0.94069 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.26 11.06 127.77 1.41 2.68 16 2 N -0.38 -8.32 4.01 -356.03 -1.43 -9.75 16 3 N -0.34 -8.67 12.58 -57.02 -0.72 -9.39 16 4 C 0.04 0.82 12.03 85.24 1.03 1.85 16 5 C -0.28 -5.92 10.72 21.99 0.24 -5.68 16 6 C 0.10 1.97 5.42 41.41 0.22 2.19 16 7 C -0.07 -0.96 5.81 29.10 0.17 -0.79 16 8 C 0.51 11.34 7.82 87.66 0.69 12.03 16 9 O -0.58 -18.94 16.03 -3.04 -0.05 -18.99 16 10 N -0.71 -14.59 5.49 -463.07 -2.54 -17.13 16 11 C 0.14 3.87 5.34 86.38 0.46 4.33 16 12 C 0.09 2.75 2.68 31.21 0.08 2.83 16 13 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 14 C 0.12 4.80 5.12 87.25 0.45 5.25 16 15 N -0.61 -28.73 2.23 -698.15 -1.55 -30.29 16 16 C -0.27 -14.01 9.46 84.04 0.80 -13.22 16 17 H 0.07 3.46 7.88 -2.91 -0.02 3.44 16 18 C -0.05 -2.49 4.89 84.86 0.41 -2.07 16 19 N -0.94 -53.78 11.00 21.65 0.24 -53.54 16 20 Si 0.97 43.04 29.58 68.60 2.03 45.07 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 C 0.18 8.58 4.70 86.38 0.41 8.99 16 25 C -0.17 -5.71 5.78 30.31 0.18 -5.54 16 26 C 0.09 2.81 6.37 71.50 0.46 3.27 16 27 O -0.39 -11.84 9.38 -117.86 -1.11 -12.95 16 28 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 1.11 7.55 -2.38 -0.02 1.09 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.21 3.05 8.06 -2.91 -0.02 3.03 16 32 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.14 0.96 7.49 -2.39 -0.02 0.95 16 34 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.42 6.41 8.46 -92.71 -0.78 5.63 16 36 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.04 1.60 8.11 -2.39 -0.02 1.58 16 39 H 0.05 1.97 7.98 -2.39 -0.02 1.96 16 40 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.05 2.42 6.37 -2.39 -0.02 2.41 16 42 H -0.01 -0.49 8.04 -2.38 -0.02 -0.51 16 43 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.06 2.06 8.01 -2.39 -0.02 2.04 16 45 H 0.04 1.45 7.40 -2.39 -0.02 1.43 16 46 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -75.17 375.68 2.06 -73.11 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.20 Total: 17.74 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 6.99 Total: 16.12 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -6.00 Total: -120.10 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.15 Total: -31.94 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -75.17 2.06 -73.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149633068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.055 kcal (2) G-P(sol) polarization free energy of solvation -75.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds