Wall clock time and date at job start Fri Apr 10 2020 18:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34952 * 126.03782 * 2 1 4 4 C 1.35312 * 107.74961 * 179.97438 * 3 2 1 5 5 C 1.39865 * 107.92142 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.90092 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47311 * 125.00282 * 6 5 4 8 8 O 1.21286 * 119.99705 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00043 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99912 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47155 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46820 * 305.00710 * 11 10 9 13 13 C 1.54802 * 109.47383 * 185.00476 * 11 10 9 14 14 N 1.45114 * 109.54013 * 172.10864 * 13 11 10 15 15 C 1.36943 * 118.75812 * 269.29276 * 14 13 11 16 16 H 1.08002 * 120.00141 * 139.41061 * 15 14 13 17 17 C 1.38814 * 119.99762 * 319.40613 * 15 14 13 18 18 N 1.31623 * 119.99347 * 156.47491 * 17 15 14 19 19 Si 1.86790 * 120.00277 * 336.47555 * 17 15 14 20 20 H 1.48502 * 109.47279 * 95.52588 * 19 17 15 21 21 H 1.48503 * 109.47209 * 215.52591 * 19 17 15 22 22 H 1.48493 * 109.47310 * 335.52499 * 19 17 15 23 23 C 1.47504 * 122.48631 * 89.29404 * 14 13 11 24 24 C 1.53580 * 111.02591 * 318.37277 * 23 14 13 25 25 C 1.51536 * 109.57966 * 320.02217 * 24 23 14 26 26 O 1.38020 * 109.46754 * 64.99712 * 11 10 9 27 27 N 1.30839 * 108.20246 * 359.73978 * 5 4 3 28 28 H 1.08996 * 109.46964 * 90.00392 * 1 2 3 29 29 H 1.08995 * 109.47668 * 330.00323 * 1 2 3 30 30 H 1.09000 * 109.46963 * 209.99983 * 1 2 3 31 31 H 1.07999 * 126.12334 * 359.95631 * 3 2 1 32 32 H 1.07999 * 126.03845 * 179.97438 * 4 3 2 33 33 H 1.09008 * 109.47036 * 244.99649 * 6 5 4 34 34 H 1.08991 * 109.47292 * 4.99794 * 6 5 4 35 35 H 0.96996 * 119.99986 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.47360 * 299.99931 * 10 9 7 37 37 H 1.08995 * 109.46994 * 60.00524 * 10 9 7 38 38 H 1.09003 * 109.45658 * 292.13407 * 13 11 10 39 39 H 1.09006 * 109.45752 * 52.08437 * 13 11 10 40 40 H 0.96999 * 119.99847 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.16998 * 197.97438 * 23 14 13 42 42 H 1.08997 * 109.12816 * 78.73821 * 23 14 13 43 43 H 1.09000 * 109.45298 * 199.98763 * 24 23 14 44 44 H 1.09003 * 109.45029 * 80.05383 * 24 23 14 45 45 H 1.09001 * 109.58603 * 331.61472 * 25 24 23 46 46 H 1.09002 * 109.58658 * 211.18394 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 0.0006 5 6 3.5347 -0.7320 0.0003 6 6 4.7498 -1.6234 0.0003 7 6 4.6726 -2.5779 1.1639 8 8 3.7245 -2.5378 1.9192 9 7 5.6572 -3.4760 1.3652 10 6 5.5824 -4.4035 2.4968 11 6 6.8160 -5.3087 2.4966 12 1 6.9008 -5.8070 1.5309 13 6 6.6772 -6.3703 3.6147 14 7 7.7499 -7.3407 3.4985 15 6 7.5465 -8.4594 2.7354 16 1 8.3363 -8.8298 2.0987 17 6 6.3251 -9.1176 2.7805 18 7 5.9451 -9.8693 1.7691 19 14 5.2211 -8.9363 4.2762 20 1 4.2215 -7.8668 4.0271 21 1 4.5193 -10.2199 4.5320 22 1 6.0446 -8.5784 5.4589 23 6 9.0512 -7.1675 4.1712 24 6 9.5338 -5.7129 4.0715 25 6 9.2235 -5.1684 2.6919 26 8 7.9451 -4.5476 2.7222 27 7 2.2892 -1.1327 0.0053 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 0.8899 0.5137 30 1 -0.3633 -0.8900 0.5138 31 1 1.9281 2.1193 -0.0007 32 1 4.4210 1.2965 0.0003 33 1 4.7858 -2.1885 -0.9312 34 1 5.6483 -1.0130 0.0899 35 1 6.4156 -3.5078 0.7613 36 1 5.5471 -3.8384 3.4281 37 1 4.6837 -5.0137 2.4077 38 1 6.7328 -5.8822 4.5878 39 1 5.7170 -6.8769 3.5172 40 1 5.0918 -10.3295 1.8007 41 1 9.7864 -7.8214 3.7022 42 1 8.9491 -7.4394 5.2218 43 1 10.6095 -5.6748 4.2434 44 1 9.0248 -5.1093 4.8230 45 1 9.2163 -5.9849 1.9698 46 1 9.9792 -4.4351 2.4100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149682410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:10 Heat of formation + Delta-G solvation = 29.059006 kcal Electronic energy + Delta-G solvation = -27467.606759 eV Core-core repulsion = 23588.357921 eV Total energy + Delta-G solvation = -3879.248838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.27657 -39.53979 -38.74396 -35.33375 -34.61507 -33.91071 -32.58507 -31.54791 -30.65384 -29.87174 -28.58337 -26.29076 -25.82358 -24.87338 -22.68572 -21.29064 -21.06117 -20.79085 -19.69440 -19.47098 -17.16601 -16.95786 -16.93952 -16.30614 -15.89069 -15.67323 -15.49541 -15.09764 -14.55508 -14.55104 -14.11226 -13.85722 -13.64195 -13.41486 -13.26023 -13.01002 -12.68783 -12.63357 -12.46197 -12.43289 -12.39967 -11.99622 -11.84993 -11.55304 -11.13672 -10.77736 -10.61205 -10.48365 -10.40477 -10.04636 -9.77029 -9.72309 -9.63532 -9.28661 -8.94220 -8.75980 -8.64660 -8.52197 -6.83708 -6.07807 -3.51735 1.82348 2.41452 2.64886 2.90292 3.30090 3.45153 3.50038 3.51403 4.13353 4.30805 4.47577 4.61573 4.73704 4.87582 4.92262 5.04214 5.13684 5.20615 5.24208 5.35327 5.43508 5.50744 5.55132 5.62949 5.69038 5.72065 5.88941 5.92186 6.01200 6.03781 6.08784 6.23281 6.37064 6.40838 6.49736 6.53291 6.62018 6.72322 6.77253 6.80477 6.90517 7.68415 7.77079 8.01438 8.13923 8.33723 8.49110 8.95063 9.64262 10.02747 11.07088 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016475 B = 0.002933 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.120229 B = 9544.946836 C =10664.019497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.379 5.379 3 C 0.047 3.953 4 C -0.266 4.266 5 C 0.085 3.915 6 C -0.060 4.060 7 C 0.512 3.488 8 O -0.531 6.531 9 N -0.720 5.720 10 C 0.133 3.867 11 C 0.072 3.928 12 H 0.064 0.936 13 C 0.119 3.881 14 N -0.604 5.604 15 C -0.283 4.283 16 H 0.077 0.923 17 C 0.043 3.957 18 N -0.893 5.893 19 Si 0.871 3.129 20 H -0.282 1.282 21 H -0.299 1.299 22 H -0.269 1.269 23 C 0.144 3.856 24 C -0.168 4.168 25 C 0.086 3.914 26 O -0.394 6.394 27 N -0.261 5.261 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.172 0.828 32 H 0.147 0.853 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.403 0.597 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.062 0.938 40 H 0.265 0.735 41 H 0.059 0.941 42 H 0.020 0.980 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 21.581 -4.334 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.161 5.161 3 C -0.099 4.099 4 C -0.296 4.296 5 C -0.083 4.083 6 C -0.101 4.101 7 C 0.296 3.704 8 O -0.407 6.407 9 N -0.372 5.372 10 C 0.009 3.991 11 C 0.010 3.990 12 H 0.082 0.918 13 C -0.009 4.009 14 N -0.327 5.327 15 C -0.411 4.411 16 H 0.094 0.906 17 C -0.159 4.159 18 N -0.533 5.533 19 Si 0.701 3.299 20 H -0.210 1.210 21 H -0.226 1.226 22 H -0.194 1.194 23 C 0.019 3.981 24 C -0.207 4.207 25 C 0.010 3.990 26 O -0.313 6.313 27 N -0.083 5.083 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.189 0.811 32 H 0.165 0.835 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.237 0.763 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.038 0.962 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.050 20.642 -3.781 21.373 hybrid contribution 0.145 0.371 0.559 0.687 sum -3.905 21.014 -3.222 21.615 Atomic orbital electron populations 1.21822 0.74409 1.04512 1.03137 1.48559 1.06645 1.03927 1.57012 1.22467 0.91184 0.93403 1.02820 1.21337 0.97097 0.94063 1.17078 1.21555 0.92774 0.93343 1.00616 1.20033 0.94978 0.96154 0.98968 1.20323 0.82489 0.81223 0.86315 1.90734 1.32468 1.70493 1.46979 1.45909 1.24268 1.35989 1.31052 1.21397 0.97366 0.91146 0.89229 1.22501 0.84038 0.91589 1.00836 0.91835 1.21828 0.93157 0.90338 0.95588 1.44016 1.11189 1.20643 1.56821 1.18788 1.00863 1.03277 1.18190 0.90556 1.25524 0.97840 0.95954 0.96577 1.69883 1.21549 1.32969 1.28865 0.87008 0.80582 0.76311 0.86032 1.20997 1.22617 1.19368 1.21259 0.88042 0.93340 0.95456 1.22565 1.00526 0.98794 0.98790 1.21998 0.83241 0.96986 0.96794 1.86087 1.13527 1.39472 1.92241 1.77486 1.01265 1.07022 1.22523 0.90872 0.89675 0.89211 0.81125 0.83516 0.87261 0.86952 0.76326 0.91227 0.90268 0.93672 0.92036 0.92559 0.92281 0.96184 0.91583 0.91696 0.91899 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.75 11.47 59.85 0.69 1.44 16 2 N -0.38 -4.48 4.01 -68.17 -0.27 -4.76 16 3 C 0.05 0.46 11.49 -17.22 -0.20 0.26 16 4 C -0.27 -2.92 10.72 -40.02 -0.43 -3.35 16 5 C 0.08 1.15 6.02 -82.41 -0.50 0.65 16 6 C -0.06 -0.68 6.28 -29.04 -0.18 -0.86 16 7 C 0.51 7.96 7.82 -10.99 -0.09 7.88 16 8 O -0.53 -10.65 15.55 5.55 0.09 -10.56 16 9 N -0.72 -10.63 5.49 -60.29 -0.33 -10.96 16 10 C 0.13 2.32 5.34 -4.04 -0.02 2.30 16 11 C 0.07 1.34 2.68 -25.78 -0.07 1.27 16 12 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 13 C 0.12 2.56 3.93 -3.84 -0.02 2.55 16 14 N -0.60 -13.91 1.75 -172.02 -0.30 -14.21 16 15 C -0.28 -7.63 9.69 -15.06 -0.15 -7.78 16 16 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 17 C 0.04 1.21 5.21 -17.43 -0.09 1.12 16 18 N -0.89 -26.66 13.97 55.49 0.78 -25.89 16 19 Si 0.87 22.14 25.26 -169.99 -4.29 17.85 16 20 H -0.28 -7.03 6.70 56.52 0.38 -6.65 16 21 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.14 2.79 6.30 -3.19 -0.02 2.77 16 24 C -0.17 -2.64 5.79 -27.17 -0.16 -2.80 16 25 C 0.09 1.36 6.37 36.42 0.23 1.59 16 26 O -0.39 -6.77 9.38 -26.55 -0.25 -7.02 16 27 N -0.26 -4.07 11.91 33.67 0.40 -3.67 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.11 1.04 8.14 -51.92 -0.42 0.62 16 34 H 0.11 0.91 8.12 -51.93 -0.42 0.48 16 35 H 0.40 4.93 8.46 -40.82 -0.35 4.59 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 39 H 0.06 1.47 3.65 -51.93 -0.19 1.28 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.06 1.13 7.91 -51.93 -0.41 0.72 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.05 8.01 -51.93 -0.42 0.63 16 45 H 0.06 1.12 7.40 -51.93 -0.38 0.74 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -36.26 372.91 -6.80 -43.06 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.24 Total: 3.49 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -0.99 Total: 7.04 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.27 Total: -59.48 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.16 Total: -17.58 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.29 Total: 17.85 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.26 -6.80 -43.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149682410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.122 kcal (2) G-P(sol) polarization free energy of solvation -36.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds