Wall clock time and date at job start Fri Apr 10 2020 18:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34952 * 126.03782 * 2 1 4 4 C 1.35312 * 107.74961 * 179.97438 * 3 2 1 5 5 C 1.39865 * 107.92142 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.90092 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47311 * 125.00282 * 6 5 4 8 8 O 1.21286 * 119.99705 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00043 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99912 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47155 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46820 * 305.00710 * 11 10 9 13 13 C 1.54802 * 109.47383 * 185.00476 * 11 10 9 14 14 N 1.45114 * 109.54013 * 172.10864 * 13 11 10 15 15 C 1.36943 * 118.75812 * 269.29276 * 14 13 11 16 16 H 1.08002 * 120.00141 * 139.41061 * 15 14 13 17 17 C 1.38814 * 119.99762 * 319.40613 * 15 14 13 18 18 N 1.31623 * 119.99347 * 156.47491 * 17 15 14 19 19 Si 1.86790 * 120.00277 * 336.47555 * 17 15 14 20 20 H 1.48502 * 109.47279 * 95.52588 * 19 17 15 21 21 H 1.48503 * 109.47209 * 215.52591 * 19 17 15 22 22 H 1.48493 * 109.47310 * 335.52499 * 19 17 15 23 23 C 1.47504 * 122.48631 * 89.29404 * 14 13 11 24 24 C 1.53580 * 111.02591 * 318.37277 * 23 14 13 25 25 C 1.51536 * 109.57966 * 320.02217 * 24 23 14 26 26 O 1.38020 * 109.46754 * 64.99712 * 11 10 9 27 27 N 1.30839 * 108.20246 * 359.73978 * 5 4 3 28 28 H 1.08996 * 109.46964 * 90.00392 * 1 2 3 29 29 H 1.08995 * 109.47668 * 330.00323 * 1 2 3 30 30 H 1.09000 * 109.46963 * 209.99983 * 1 2 3 31 31 H 1.07999 * 126.12334 * 359.95631 * 3 2 1 32 32 H 1.07999 * 126.03845 * 179.97438 * 4 3 2 33 33 H 1.09008 * 109.47036 * 244.99649 * 6 5 4 34 34 H 1.08991 * 109.47292 * 4.99794 * 6 5 4 35 35 H 0.96996 * 119.99986 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.47360 * 299.99931 * 10 9 7 37 37 H 1.08995 * 109.46994 * 60.00524 * 10 9 7 38 38 H 1.09003 * 109.45658 * 292.13407 * 13 11 10 39 39 H 1.09006 * 109.45752 * 52.08437 * 13 11 10 40 40 H 0.96999 * 119.99847 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.16998 * 197.97438 * 23 14 13 42 42 H 1.08997 * 109.12816 * 78.73821 * 23 14 13 43 43 H 1.09000 * 109.45298 * 199.98763 * 24 23 14 44 44 H 1.09003 * 109.45029 * 80.05383 * 24 23 14 45 45 H 1.09001 * 109.58603 * 331.61472 * 25 24 23 46 46 H 1.09002 * 109.58658 * 211.18394 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 0.0006 5 6 3.5347 -0.7320 0.0003 6 6 4.7498 -1.6234 0.0003 7 6 4.6726 -2.5779 1.1639 8 8 3.7245 -2.5378 1.9192 9 7 5.6572 -3.4760 1.3652 10 6 5.5824 -4.4035 2.4968 11 6 6.8160 -5.3087 2.4966 12 1 6.9008 -5.8070 1.5309 13 6 6.6772 -6.3703 3.6147 14 7 7.7499 -7.3407 3.4985 15 6 7.5465 -8.4594 2.7354 16 1 8.3363 -8.8298 2.0987 17 6 6.3251 -9.1176 2.7805 18 7 5.9451 -9.8693 1.7691 19 14 5.2211 -8.9363 4.2762 20 1 4.2215 -7.8668 4.0271 21 1 4.5193 -10.2199 4.5320 22 1 6.0446 -8.5784 5.4589 23 6 9.0512 -7.1675 4.1712 24 6 9.5338 -5.7129 4.0715 25 6 9.2235 -5.1684 2.6919 26 8 7.9451 -4.5476 2.7222 27 7 2.2892 -1.1327 0.0053 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 0.8899 0.5137 30 1 -0.3633 -0.8900 0.5138 31 1 1.9281 2.1193 -0.0007 32 1 4.4210 1.2965 0.0003 33 1 4.7858 -2.1885 -0.9312 34 1 5.6483 -1.0130 0.0899 35 1 6.4156 -3.5078 0.7613 36 1 5.5471 -3.8384 3.4281 37 1 4.6837 -5.0137 2.4077 38 1 6.7328 -5.8822 4.5878 39 1 5.7170 -6.8769 3.5172 40 1 5.0918 -10.3295 1.8007 41 1 9.7864 -7.8214 3.7022 42 1 8.9491 -7.4394 5.2218 43 1 10.6095 -5.6748 4.2434 44 1 9.0248 -5.1093 4.8230 45 1 9.2163 -5.9849 1.9698 46 1 9.9792 -4.4351 2.4100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149682410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:09 Heat of formation + Delta-G solvation = 2.042292 kcal Electronic energy + Delta-G solvation = -27468.778292 eV Core-core repulsion = 23588.357921 eV Total energy + Delta-G solvation = -3880.420371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.10044 -40.91852 -40.11875 -37.04605 -35.99344 -34.75922 -34.21405 -33.35589 -31.57244 -30.83460 -30.00989 -27.65318 -27.13620 -26.25685 -24.32728 -22.59701 -22.11150 -21.88072 -21.25023 -20.49564 -18.92598 -18.20963 -17.89519 -17.77109 -17.49047 -17.05150 -16.46664 -16.27252 -16.14531 -15.86607 -15.45925 -15.09349 -14.89286 -14.58342 -14.51933 -14.33068 -14.18023 -13.86582 -13.82658 -13.61198 -13.43885 -13.18668 -13.13907 -12.88522 -12.79186 -12.41165 -12.29408 -12.05851 -11.80533 -11.59066 -11.47692 -11.31007 -10.94198 -10.71630 -10.34814 -10.18342 -10.08153 -9.42865 -8.75738 -8.27406 -5.66546 1.03234 1.25649 1.35258 1.45305 1.69582 1.73150 1.79306 2.33966 2.35856 2.72749 2.98074 3.29793 3.55753 3.91208 3.94956 4.02308 4.07728 4.15400 4.20615 4.28381 4.40806 4.42410 4.45193 4.46586 4.54047 4.56481 4.66602 4.69687 4.71915 4.77580 4.86300 4.93274 4.99123 5.05393 5.17345 5.19661 5.24875 5.36480 5.42690 5.72638 5.90654 6.12780 6.25047 6.60879 6.71700 6.85257 6.97132 7.30950 7.58203 7.97623 8.91489 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016475 B = 0.002933 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.120229 B = 9544.946836 C =10664.019497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.389 5.389 3 C 0.054 3.946 4 C -0.282 4.282 5 C 0.063 3.937 6 C -0.052 4.052 7 C 0.510 3.490 8 O -0.580 6.580 9 N -0.710 5.710 10 C 0.141 3.859 11 C 0.094 3.906 12 H 0.042 0.958 13 C 0.112 3.888 14 N -0.614 5.614 15 C -0.264 4.264 16 H 0.047 0.953 17 C -0.007 4.007 18 N -0.937 5.937 19 Si 0.927 3.073 20 H -0.279 1.279 21 H -0.304 1.304 22 H -0.263 1.263 23 C 0.137 3.863 24 C -0.156 4.156 25 C 0.082 3.918 26 O -0.388 6.388 27 N -0.326 5.326 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.216 0.784 32 H 0.173 0.827 33 H 0.127 0.873 34 H 0.151 0.849 35 H 0.417 0.583 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.037 0.963 40 H 0.263 0.737 41 H 0.056 0.944 42 H 0.022 0.978 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.038 0.962 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 25.090 -3.942 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.172 5.172 3 C -0.091 4.091 4 C -0.311 4.311 5 C -0.103 4.103 6 C -0.093 4.093 7 C 0.297 3.703 8 O -0.460 6.460 9 N -0.363 5.363 10 C 0.016 3.984 11 C 0.033 3.967 12 H 0.060 0.940 13 C -0.015 4.015 14 N -0.337 5.337 15 C -0.394 4.394 16 H 0.065 0.935 17 C -0.205 4.205 18 N -0.580 5.580 19 Si 0.755 3.245 20 H -0.206 1.206 21 H -0.232 1.232 22 H -0.187 1.187 23 C 0.013 3.987 24 C -0.195 4.195 25 C 0.006 3.994 26 O -0.307 6.307 27 N -0.150 5.150 28 H 0.107 0.893 29 H 0.137 0.863 30 H 0.092 0.908 31 H 0.232 0.768 32 H 0.191 0.809 33 H 0.145 0.855 34 H 0.169 0.831 35 H 0.253 0.747 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.122 0.878 44 H 0.085 0.915 45 H 0.057 0.943 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.834 24.180 -3.388 24.580 hybrid contribution -0.149 -0.659 0.411 0.791 sum -2.982 23.521 -2.978 23.895 Atomic orbital electron populations 1.22117 0.72615 1.05384 1.04462 1.48908 1.07896 1.03714 1.56639 1.23228 0.90744 0.94685 1.00493 1.21750 0.98729 0.93206 1.17417 1.22003 0.92718 0.94970 1.00610 1.20144 0.96073 0.95655 0.97394 1.21087 0.81350 0.81174 0.86716 1.90712 1.34322 1.71894 1.49051 1.45782 1.24852 1.35231 1.30442 1.21098 0.95799 0.91139 0.90373 1.22049 0.85278 0.91007 0.98415 0.94040 1.21884 0.91602 0.90641 0.97372 1.44145 1.12793 1.19892 1.56902 1.18690 0.99631 1.03806 1.17285 0.93546 1.26028 0.99512 0.96482 0.98460 1.69984 1.22330 1.35155 1.30572 0.86107 0.79222 0.75860 0.83276 1.20616 1.23220 1.18697 1.21445 0.86078 0.96291 0.94901 1.22475 1.02740 0.95604 0.98638 1.22224 0.83239 0.97550 0.96353 1.86110 1.13584 1.38972 1.92010 1.77378 1.02778 1.09776 1.25039 0.89324 0.86321 0.90814 0.76768 0.80944 0.85497 0.83083 0.74662 0.91279 0.92498 0.92280 0.94496 0.92752 0.92596 0.96033 0.87848 0.91479 0.94336 0.86725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 11.47 127.77 1.47 2.75 16 2 N -0.39 -8.79 4.01 -369.58 -1.48 -10.28 16 3 C 0.05 0.92 11.49 83.54 0.96 1.88 16 4 C -0.28 -5.52 10.72 21.99 0.24 -5.29 16 5 C 0.06 1.66 6.02 43.10 0.26 1.92 16 6 C -0.05 -1.09 6.28 29.10 0.18 -0.91 16 7 C 0.51 15.61 7.82 87.66 0.69 16.29 16 8 O -0.58 -23.74 15.55 -3.05 -0.05 -23.79 16 9 N -0.71 -20.39 5.49 -463.05 -2.54 -22.94 16 10 C 0.14 4.92 5.34 86.38 0.46 5.38 16 11 C 0.09 3.48 2.68 31.21 0.08 3.56 16 12 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 13 C 0.11 4.80 3.93 87.25 0.34 5.15 16 14 N -0.61 -28.12 1.75 -698.16 -1.22 -29.33 16 15 C -0.26 -14.59 9.69 84.03 0.81 -13.78 16 16 H 0.05 2.81 8.06 -2.91 -0.02 2.79 16 17 C -0.01 -0.40 5.21 84.86 0.44 0.04 16 18 N -0.94 -57.94 13.97 21.65 0.30 -57.64 16 19 Si 0.93 46.84 25.26 68.60 1.73 48.57 16 20 H -0.28 -13.80 6.70 99.48 0.67 -13.14 16 21 H -0.30 -15.50 7.11 99.48 0.71 -14.80 16 22 H -0.26 -12.84 7.11 99.48 0.71 -12.14 16 23 C 0.14 5.08 6.30 86.38 0.54 5.62 16 24 C -0.16 -4.38 5.79 30.31 0.18 -4.20 16 25 C 0.08 2.35 6.37 71.50 0.46 2.81 16 26 O -0.39 -12.42 9.38 -117.93 -1.11 -13.53 16 27 N -0.33 -10.24 11.91 -47.39 -0.56 -10.80 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.22 1.43 8.06 -2.91 -0.02 1.41 16 32 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.13 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.15 1.93 8.12 -2.39 -0.02 1.91 16 35 H 0.42 9.52 8.46 -92.71 -0.78 8.74 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.06 2.36 8.11 -2.39 -0.02 2.34 16 39 H 0.04 1.78 3.65 -2.38 -0.01 1.77 16 40 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.06 2.09 7.91 -2.39 -0.02 2.07 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.07 1.91 8.01 -2.39 -0.02 1.89 16 45 H 0.04 1.31 7.40 -2.39 -0.02 1.30 16 46 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -83.00 372.91 2.34 -80.66 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.16 Total: 17.84 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 7.11 Total: 21.23 kcal Atomic # 7 Polarization: -125.48 SS G_CDS: -5.51 Total: -130.99 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -1.15 Total: -37.32 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.73 Total: 48.57 kcal Total: -83.00 2.34 -80.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149682410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.701 kcal (2) G-P(sol) polarization free energy of solvation -82.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds