Wall clock time and date at job start Fri Apr 10 2020 18:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47129 * 2 1 4 4 C 1.46898 * 111.00430 * 160.59151 * 3 2 1 5 5 C 1.50701 * 109.47287 * 288.23869 * 4 3 2 6 6 O 1.21291 * 119.99727 * 358.84328 * 5 4 3 7 7 N 1.34780 * 119.99933 * 178.84998 * 5 4 3 8 8 C 1.37095 * 119.99679 * 180.02562 * 7 5 4 9 9 H 1.07997 * 120.00292 * 359.97438 * 8 7 5 10 10 C 1.38953 * 119.99792 * 179.97438 * 8 7 5 11 11 N 1.31413 * 119.99922 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99950 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.46985 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46834 * 119.99884 * 12 10 8 15 15 H 1.48501 * 109.47032 * 239.99795 * 12 10 8 16 16 C 1.46899 * 111.00291 * 284.54861 * 3 2 1 17 17 H 1.09002 * 109.46760 * 49.05628 * 16 3 2 18 18 C 1.52997 * 109.46891 * 289.06053 * 16 3 2 19 19 C 1.52997 * 109.47741 * 169.05534 * 16 3 2 20 20 N 1.46501 * 109.46957 * 304.35469 * 19 16 3 21 21 C 1.34778 * 119.99620 * 184.76179 * 20 19 16 22 22 O 1.21693 * 120.00153 * 359.97438 * 21 20 19 23 23 C 1.46679 * 119.99925 * 180.02562 * 21 20 19 24 24 C 1.37865 * 126.23604 * 180.02562 * 23 21 20 25 25 C 1.39832 * 107.08951 * 179.97438 * 24 23 21 26 26 C 1.35456 * 107.86401 * 0.02562 * 25 24 23 27 27 N 1.35536 * 108.86782 * 359.73031 * 26 25 24 28 28 H 0.97005 * 125.67742 * 180.31116 * 27 26 25 29 29 H 1.09003 * 109.46924 * 185.41592 * 1 2 3 30 30 H 1.08998 * 109.47031 * 305.41009 * 1 2 3 31 31 H 1.08990 * 109.47083 * 65.41626 * 1 2 3 32 32 H 1.08999 * 109.47549 * 239.99864 * 2 1 3 33 33 H 1.09005 * 109.47488 * 119.99624 * 2 1 3 34 34 H 1.09003 * 109.47035 * 48.23686 * 4 3 2 35 35 H 1.09002 * 109.47735 * 168.23404 * 4 3 2 36 36 H 0.96999 * 119.99871 * 359.97438 * 7 5 4 37 37 H 0.96994 * 119.99569 * 179.97438 * 11 10 8 38 38 H 1.09003 * 109.47324 * 179.97438 * 18 16 3 39 39 H 1.09002 * 109.47072 * 299.99384 * 18 16 3 40 40 H 1.09000 * 109.47339 * 59.99658 * 18 16 3 41 41 H 1.09007 * 109.46776 * 64.35448 * 19 16 3 42 42 H 1.08997 * 109.47436 * 184.34918 * 19 16 3 43 43 H 0.96994 * 119.99972 * 4.76004 * 20 19 16 44 44 H 1.08004 * 126.45713 * 0.02753 * 24 23 21 45 45 H 1.07999 * 126.07176 * 179.97438 * 25 24 23 46 46 H 1.07989 * 125.56690 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4146 1.4502 0.4557 5 6 3.4723 1.1805 1.9373 6 8 2.4496 0.9768 2.5568 7 7 4.6602 1.1659 2.5738 8 6 4.7126 0.9200 3.9215 9 1 3.8021 0.7385 4.4732 10 6 5.9373 0.9044 4.5777 11 7 7.0453 1.1248 3.9064 12 14 6.0088 0.5700 6.4142 13 1 4.6338 0.3544 6.9319 14 1 6.8276 -0.6433 6.6649 15 1 6.6219 1.7326 7.1055 16 6 1.8703 1.9962 -1.3274 17 1 0.8583 1.8253 -1.6943 18 6 2.8762 1.3680 -2.2941 19 6 2.1295 3.5008 -1.2283 20 7 1.2355 4.0853 -0.2256 21 6 1.2177 5.4193 -0.0346 22 8 1.9446 6.1383 -0.6946 23 6 0.3231 6.0045 0.9697 24 6 0.2003 7.3445 1.2698 25 6 -0.7602 7.4530 2.2802 26 6 -1.1974 6.2050 2.5737 27 7 -0.5510 5.3163 1.7804 28 1 -0.6814 4.3550 1.7843 29 1 -0.3633 -1.0231 0.0970 30 1 -0.3633 0.5954 0.8376 31 1 -0.3633 0.4275 -0.9344 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.0050 0.7019 -0.0731 35 1 3.8178 2.4420 0.2510 36 1 5.4780 1.3286 2.0783 37 1 7.9002 1.1142 4.3645 38 1 2.7651 1.8212 -3.2792 39 1 3.8882 1.5389 -1.9272 40 1 2.6915 0.2961 -2.3648 41 1 3.1654 3.6725 -0.9357 42 1 1.9435 3.9661 -2.1963 43 1 0.6564 3.5122 0.3007 44 1 0.7430 8.1574 0.8104 45 1 -1.0937 8.3691 2.7448 46 1 -1.9430 5.9587 3.3151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151852824.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:26 Heat of formation + Delta-G solvation = -46.118392 kcal Electronic energy + Delta-G solvation = -27927.183503 eV Core-core repulsion = 24044.674728 eV Total energy + Delta-G solvation = -3882.508775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.16795 -40.84483 -39.97613 -38.81281 -35.98575 -35.52338 -33.29120 -32.91343 -31.90230 -31.34205 -30.28467 -27.96757 -27.33513 -26.02762 -23.88122 -23.21923 -21.70177 -21.40390 -21.00797 -20.44847 -19.91030 -19.46113 -18.17785 -17.19550 -17.01142 -16.78029 -16.49574 -16.10965 -16.04108 -15.59797 -15.57573 -15.13110 -14.87294 -14.67209 -14.52393 -14.28128 -13.96150 -13.74100 -13.64170 -13.52000 -13.46193 -13.19271 -13.04942 -12.93027 -12.85972 -12.42031 -12.38593 -12.34056 -12.12697 -11.89342 -11.54776 -11.38885 -11.25263 -10.28140 -10.16297 -9.98635 -9.94002 -9.20694 -9.14965 -8.46115 -5.94289 0.49064 1.35338 1.40101 1.53820 1.85956 2.08062 2.10298 2.26349 2.29936 2.40340 2.74099 3.21158 3.38933 3.72349 3.91020 4.02831 4.15226 4.23896 4.29313 4.33275 4.41347 4.44193 4.50694 4.53700 4.56174 4.61459 4.69076 4.77338 4.83198 4.86031 5.12415 5.13581 5.21133 5.25127 5.27741 5.39498 5.41064 5.44456 5.76833 5.90106 5.96346 6.09410 6.21065 6.46738 6.61091 6.61533 7.14026 7.14137 7.58594 8.13605 8.71773 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009016 B = 0.004075 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.966860 B = 6869.609148 C = 8488.642956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.053 3.947 3 N -0.517 5.517 4 C 0.056 3.944 5 C 0.445 3.555 6 O -0.606 6.606 7 N -0.580 5.580 8 C -0.326 4.326 9 H 0.080 0.920 10 C -0.015 4.015 11 N -0.924 5.924 12 Si 0.991 3.009 13 H -0.271 1.271 14 H -0.271 1.271 15 H -0.274 1.274 16 C 0.073 3.927 17 H 0.113 0.887 18 C -0.182 4.182 19 C 0.128 3.872 20 N -0.705 5.705 21 C 0.581 3.419 22 O -0.581 6.581 23 C -0.084 4.084 24 C -0.129 4.129 25 C -0.227 4.227 26 C 0.038 3.962 27 N -0.530 5.530 28 H 0.427 0.573 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.392 0.608 37 H 0.276 0.724 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.085 0.915 43 H 0.410 0.590 44 H 0.138 0.862 45 H 0.164 0.836 46 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.050 3.184 -10.450 18.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.074 4.074 3 N -0.241 5.241 4 C -0.075 4.075 5 C 0.232 3.768 6 O -0.491 6.491 7 N -0.217 5.217 8 C -0.456 4.456 9 H 0.098 0.902 10 C -0.215 4.215 11 N -0.565 5.565 12 Si 0.815 3.185 13 H -0.196 1.196 14 H -0.197 1.197 15 H -0.200 1.200 16 C -0.036 4.036 17 H 0.131 0.869 18 C -0.241 4.241 19 C 0.004 3.996 20 N -0.355 5.355 21 C 0.370 3.630 22 O -0.462 6.462 23 C -0.197 4.197 24 C -0.156 4.156 25 C -0.250 4.250 26 C -0.099 4.099 27 N -0.126 5.126 28 H 0.266 0.734 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.225 0.775 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.246 0.754 44 H 0.156 0.844 45 H 0.182 0.818 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -15.301 3.595 -10.169 18.721 hybrid contribution 1.295 -1.105 0.499 1.774 sum -14.006 2.490 -9.670 17.201 Atomic orbital electron populations 1.21646 0.93456 1.01868 1.02067 1.22079 0.97348 0.87863 1.00127 1.61730 1.17825 1.19708 1.24876 1.21699 0.91586 1.02575 0.91626 1.20746 0.83359 0.82283 0.90430 1.90463 1.34555 1.55017 1.69112 1.41977 1.07704 1.63382 1.08677 1.19660 0.94172 1.46846 0.84932 0.90184 1.26019 0.94152 0.96806 1.04491 1.69687 0.98494 1.49978 1.38344 0.84902 0.78291 0.78156 0.77192 1.19583 1.19651 1.19959 1.22079 1.01887 0.91723 0.87861 0.86930 1.22378 0.99291 1.01935 1.00536 1.21517 0.93350 0.92720 0.92010 1.45661 1.43284 1.05952 1.40607 1.17361 0.81522 0.82367 0.81707 1.90778 1.43882 1.61709 1.49831 1.20339 1.03108 0.93342 1.02928 1.21512 1.00497 0.93847 0.99736 1.21208 1.02660 0.98632 1.02538 1.22742 1.00438 0.88785 0.97920 1.42121 1.30922 1.10229 1.29365 0.73422 0.91849 0.93222 0.91199 0.93116 0.93563 0.91446 0.88902 0.77455 0.91485 0.89762 0.92604 0.91115 0.93137 0.89699 0.75403 0.84394 0.81837 0.77357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.94 71.98 0.72 -2.06 16 2 C 0.05 1.39 5.12 86.30 0.44 1.83 16 3 N -0.52 -13.87 3.41 -875.53 -2.99 -16.86 16 4 C 0.06 1.86 4.15 85.56 0.36 2.22 16 5 C 0.44 20.41 7.29 87.66 0.64 21.05 16 6 O -0.61 -31.26 14.67 -3.06 -0.04 -31.31 16 7 N -0.58 -29.65 5.29 -306.98 -1.62 -31.27 16 8 C -0.33 -18.43 9.68 84.04 0.81 -17.62 16 9 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 10 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 11 N -0.92 -50.58 13.05 21.66 0.28 -50.30 16 12 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 16 C 0.07 1.44 2.39 44.91 0.11 1.55 16 17 H 0.11 1.81 6.68 -2.39 -0.02 1.79 16 18 C -0.18 -3.06 8.50 71.98 0.61 -2.45 16 19 C 0.13 3.04 4.92 86.38 0.43 3.46 16 20 N -0.70 -18.44 5.41 -467.07 -2.53 -20.97 16 21 C 0.58 18.35 7.79 86.45 0.67 19.03 16 22 O -0.58 -22.26 16.88 -4.33 -0.07 -22.33 16 23 C -0.08 -2.36 7.06 40.35 0.28 -2.08 16 24 C -0.13 -3.49 10.65 22.57 0.24 -3.25 16 25 C -0.23 -4.72 10.81 22.01 0.24 -4.48 16 26 C 0.04 0.68 11.89 83.48 0.99 1.67 16 27 N -0.53 -11.26 5.99 -183.63 -1.10 -12.36 16 28 H 0.43 7.44 8.19 -92.70 -0.76 6.68 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.11 6.94 -2.39 -0.02 1.09 16 32 H 0.05 1.11 6.24 -2.39 -0.01 1.09 16 33 H 0.05 1.61 6.43 -2.38 -0.02 1.59 16 34 H 0.07 2.03 7.13 -2.39 -0.02 2.01 16 35 H 0.09 3.02 6.07 -2.39 -0.01 3.01 16 36 H 0.39 19.50 7.90 -92.71 -0.73 18.77 16 37 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.05 1.07 6.68 -2.39 -0.02 1.05 16 40 H 0.07 1.12 6.50 -2.39 -0.02 1.11 16 41 H 0.05 1.40 6.50 -2.38 -0.02 1.39 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.41 9.82 7.22 -92.71 -0.67 9.15 16 44 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 45 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 46 H 0.21 1.92 8.06 -2.92 -0.02 1.90 16 Total: -1.00 -73.75 375.94 -0.16 -73.92 By element: Atomic # 1 Polarization: 48.88 SS G_CDS: -1.12 Total: 47.76 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 7.01 Total: 18.50 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -7.96 Total: -131.76 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -0.12 Total: -53.64 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -73.75 -0.16 -73.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151852824.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.797 kcal (2) G-P(sol) polarization free energy of solvation -73.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds