Wall clock time and date at job start Fri Apr 10 2020 18:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 O 1.21281 * 119.99736 * 119.99813 * 4 2 1 6 6 N 1.34770 * 120.00019 * 300.00531 * 4 2 1 7 7 C 1.46512 * 119.99646 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.46797 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47060 * 180.02562 * 8 7 6 10 10 N 1.46899 * 109.47254 * 179.97438 * 9 8 7 11 11 C 1.46907 * 110.99845 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.46847 * 179.97438 * 11 10 9 13 13 O 1.21296 * 119.99672 * 0.02562 * 12 11 10 14 14 N 1.34772 * 119.99923 * 179.97438 * 12 11 10 15 15 C 1.37091 * 120.00030 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00238 * 359.97438 * 15 14 12 17 17 C 1.38952 * 120.00107 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00022 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00221 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47059 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47148 * 120.00099 * 19 17 15 22 22 H 1.48504 * 109.47374 * 240.00623 * 19 17 15 23 23 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 24 24 C 1.36344 * 125.63165 * 299.69202 * 23 2 1 25 25 C 1.34857 * 108.21810 * 179.83279 * 24 23 2 26 26 C 1.40896 * 107.41160 * 0.42434 * 25 24 23 27 27 C 1.34845 * 107.41907 * 359.73348 * 26 25 24 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 0.96992 * 120.00518 * 359.97438 * 6 4 2 32 32 H 1.09001 * 109.47027 * 299.99897 * 7 6 4 33 33 H 1.08992 * 109.46968 * 60.00347 * 7 6 4 34 34 H 1.09001 * 109.47194 * 299.99728 * 8 7 6 35 35 H 1.09002 * 109.47398 * 59.99909 * 8 7 6 36 36 H 1.08998 * 109.47076 * 300.00326 * 9 8 7 37 37 H 1.09002 * 109.47153 * 59.99681 * 9 8 7 38 38 H 1.00898 * 110.99862 * 56.04911 * 10 9 8 39 39 H 1.08995 * 109.46981 * 300.00003 * 11 10 9 40 40 H 1.08993 * 109.46826 * 60.00089 * 11 10 9 41 41 H 0.97000 * 119.99730 * 0.02562 * 14 12 11 42 42 H 0.96996 * 120.00021 * 179.97438 * 18 17 15 43 43 H 1.08000 * 125.89402 * 359.96313 * 24 23 2 44 44 H 1.07990 * 126.29452 * 180.16071 * 25 24 23 45 45 H 1.08003 * 126.28473 * 179.73871 * 26 25 24 46 46 H 1.08001 * 125.89015 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1947 -0.9411 3.6507 8 6 1.6842 -0.2202 4.9000 9 6 2.1943 -0.9414 6.1492 10 7 1.7046 -0.2489 7.3486 11 6 2.1763 -0.9148 8.5703 12 6 1.6557 -0.1775 9.7771 13 8 0.9598 0.8056 9.6336 14 7 1.9624 -0.6110 11.0158 15 6 1.4884 0.0594 12.1136 16 1 0.8695 0.9352 11.9860 17 6 1.8043 -0.3879 13.3907 18 7 2.5578 -1.4533 13.5461 19 14 1.1590 0.5259 14.8866 20 1 0.3408 1.6837 14.4445 21 1 0.3209 -0.3893 15.7023 22 1 2.3019 1.0096 15.7023 23 7 2.0184 -0.6905 -1.1962 24 6 1.7657 -1.9901 -1.5221 25 6 2.3800 -2.2585 -2.6922 26 6 3.0442 -1.0843 -3.0987 27 6 2.8055 -0.1415 -2.1647 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.1494 0.5388 2.5436 32 1 1.8310 -1.9686 3.6505 33 1 3.2846 -0.9413 3.6509 34 1 2.0475 0.8075 4.9004 35 1 0.5942 -0.2202 4.8996 36 1 1.8314 -1.9692 6.1489 37 1 3.2843 -0.9410 6.1493 38 1 0.6981 -0.1790 7.3402 39 1 1.8132 -1.9424 8.5872 40 1 3.2661 -0.9141 8.5867 41 1 2.5186 -1.3974 11.1304 42 1 2.7785 -1.7653 14.4376 43 1 1.1737 -2.6842 -0.9440 44 1 2.3689 -3.2014 -3.2184 45 1 3.6357 -0.9619 -3.9941 46 1 3.1746 0.8734 -2.1807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156655615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:44 Heat of formation + Delta-G solvation = -21.885025 kcal Electronic energy + Delta-G solvation = -25357.035608 eV Core-core repulsion = 21475.577671 eV Total energy + Delta-G solvation = -3881.457937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.69929 -39.86068 -38.36035 -36.68051 -35.07196 -34.68030 -33.87300 -31.59320 -31.16365 -29.68177 -28.94250 -27.29996 -25.48194 -24.45763 -23.18889 -21.85047 -21.31739 -20.70651 -19.91687 -19.25570 -18.14839 -17.89687 -17.35185 -16.57028 -16.17177 -15.88742 -15.60395 -14.94348 -14.86403 -14.56497 -14.27377 -14.18730 -13.94096 -13.79646 -13.56108 -13.48620 -13.05292 -12.95016 -12.70035 -12.55188 -12.33071 -12.19149 -12.06954 -11.91232 -11.88825 -11.51084 -11.48976 -11.14866 -11.01673 -10.37757 -10.36499 -10.25102 -9.54985 -9.54880 -8.86502 -8.51704 -8.32859 -8.12847 -7.99196 -6.44530 -3.85526 1.91667 2.05041 2.39905 2.82924 2.89273 3.14256 3.25029 3.32092 3.87230 3.94683 4.04189 4.17964 4.20468 4.24849 4.63501 4.71011 4.84056 4.91486 4.93713 4.95531 5.02892 5.11632 5.22499 5.31375 5.33760 5.39373 5.40800 5.43975 5.53278 5.73702 5.83718 5.91868 5.93924 5.99838 6.08983 6.09994 6.22912 6.78589 6.88843 7.00021 7.12328 7.13087 7.52692 7.58271 7.66421 8.03449 8.58031 9.14964 9.51202 10.02310 10.73225 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.050925 B = 0.001431 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.693870 B =19562.973847 C =19865.414515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.124 0.876 4 C 0.499 3.501 5 O -0.517 6.517 6 N -0.723 5.723 7 C 0.121 3.879 8 C -0.129 4.129 9 C 0.062 3.938 10 N -0.669 5.669 11 C 0.050 3.950 12 C 0.440 3.560 13 O -0.584 6.584 14 N -0.563 5.563 15 C -0.300 4.300 16 H 0.104 0.896 17 C 0.022 3.978 18 N -0.901 5.901 19 Si 0.930 3.070 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 N -0.434 5.434 24 C 0.016 3.984 25 C -0.209 4.209 26 C -0.196 4.196 27 C -0.021 4.021 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.403 0.597 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.349 0.651 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.154 0.846 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.188 0.570 -29.015 29.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.142 0.858 4 C 0.283 3.717 5 O -0.391 6.391 6 N -0.376 5.376 7 C -0.003 4.003 8 C -0.167 4.167 9 C -0.068 4.068 10 N -0.302 5.302 11 C -0.082 4.082 12 C 0.225 3.775 13 O -0.469 6.469 14 N -0.200 5.200 15 C -0.430 4.430 16 H 0.122 0.878 17 C -0.179 4.179 18 N -0.542 5.542 19 Si 0.757 3.243 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 N -0.111 5.111 24 C -0.113 4.113 25 C -0.233 4.233 26 C -0.221 4.221 27 C -0.149 4.149 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.237 0.763 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.168 0.832 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.226 0.774 42 H 0.081 0.919 43 H 0.172 0.828 44 H 0.151 0.849 45 H 0.152 0.848 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.690 1.050 -28.692 28.761 hybrid contribution -0.595 -0.562 1.058 1.338 sum -2.285 0.488 -27.634 27.732 Atomic orbital electron populations 1.22143 0.91056 1.04286 1.04230 1.21264 0.96901 0.97540 0.83435 0.85849 1.20631 0.81019 0.85328 0.84730 1.90801 1.36549 1.25494 1.86299 1.45956 1.53867 1.32328 1.05450 1.21382 0.99774 0.96357 0.82783 1.21745 1.01448 1.00943 0.92574 1.21822 1.00739 0.94933 0.89307 1.60048 1.17465 1.52782 0.99882 1.21673 1.01062 0.95498 0.89981 1.19800 0.86054 0.87527 0.84075 1.90518 1.42116 1.28404 1.85839 1.41870 1.46037 1.27766 1.04294 1.19760 1.29140 1.10657 0.83419 0.87845 1.25271 0.96926 0.96582 0.99150 1.69619 1.37038 1.23567 1.24012 0.85795 0.78528 0.79316 0.80669 1.19205 1.20761 1.20715 1.43698 1.40192 1.10447 1.16793 1.21642 1.05818 0.85469 0.98386 1.20858 1.05017 0.99321 0.98099 1.20862 1.06227 0.93862 1.01133 1.21771 1.01542 0.99912 0.91683 0.91009 0.89951 0.90268 0.76261 0.91236 0.91024 0.90036 0.91162 0.95209 0.90745 0.83188 0.93787 0.89532 0.77435 0.91890 0.82828 0.84880 0.84827 0.82365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 9.14 37.16 0.34 -0.28 16 2 C 0.12 0.70 3.36 -69.08 -0.23 0.47 16 3 H 0.12 0.45 8.06 -51.93 -0.42 0.03 16 4 C 0.50 4.36 7.11 -10.99 -0.08 4.28 16 5 O -0.52 -6.92 15.44 5.56 0.09 -6.83 16 6 N -0.72 -4.77 5.45 -60.29 -0.33 -5.10 16 7 C 0.12 0.97 5.67 -4.04 -0.02 0.95 16 8 C -0.13 -1.07 5.59 -26.73 -0.15 -1.21 16 9 C 0.06 0.68 5.68 -3.83 -0.02 0.66 16 10 N -0.67 -10.17 6.12 -115.06 -0.70 -10.87 16 11 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 12 C 0.44 10.26 7.82 -10.99 -0.09 10.17 16 13 O -0.58 -15.67 15.78 5.54 0.09 -15.58 16 14 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 15 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 16 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 17 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 19 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 N -0.43 -3.81 2.40 -111.25 -0.27 -4.08 16 24 C 0.02 0.16 9.56 -16.75 -0.16 0.00 16 25 C -0.21 -2.09 10.86 -39.78 -0.43 -2.52 16 26 C -0.20 -1.84 10.86 -39.78 -0.43 -2.27 16 27 C -0.02 -0.18 11.39 -16.75 -0.19 -0.37 16 28 H 0.07 0.35 7.92 -51.93 -0.41 -0.06 16 29 H 0.08 0.16 7.56 -51.93 -0.39 -0.23 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.40 1.52 7.89 -40.82 -0.32 1.20 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.35 5.40 8.43 -39.29 -0.33 5.07 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 44 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 46 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 391.54 15.07 5.90 5.90 Total: -1.00 -35.30 391.54 -8.53 -43.82 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -7.21 Total: 12.04 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.74 Total: 2.74 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.63 Total: -57.92 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: 0.17 Total: -22.41 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.30 -8.53 -43.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156655615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.937 kcal (2) G-P(sol) polarization free energy of solvation -35.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds