Wall clock time and date at job start Fri Apr 10 2020 18:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.47045 * 125.41435 * 2 1 4 4 C 1.54103 * 103.86312 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.54890 * 118.74597 * 4 3 2 6 6 C 1.50704 * 110.54518 * 241.40506 * 4 3 2 7 7 O 1.21279 * 119.99860 * 100.00567 * 6 4 3 8 8 N 1.34773 * 120.00203 * 279.99955 * 6 4 3 9 9 C 1.46498 * 120.00028 * 180.02562 * 8 6 4 10 10 C 1.53008 * 109.47258 * 180.02562 * 9 8 6 11 11 C 1.50693 * 109.47255 * 179.97438 * 10 9 8 12 12 C 1.29457 * 117.69428 * 94.99650 * 11 10 9 13 13 C 1.50323 * 123.65098 * 180.85773 * 12 11 10 14 14 N 1.47013 * 109.16680 * 349.02384 * 13 12 11 15 15 C 1.36938 * 121.37875 * 222.96617 * 14 13 12 16 16 H 1.07993 * 120.00138 * 155.35119 * 15 14 13 17 17 C 1.38814 * 119.99697 * 335.35783 * 15 14 13 18 18 N 1.31623 * 119.99598 * 159.82066 * 17 15 14 19 19 Si 1.86797 * 119.99974 * 339.81878 * 17 15 14 20 20 H 1.48497 * 109.47223 * 88.41246 * 19 17 15 21 21 H 1.48500 * 109.47133 * 208.40879 * 19 17 15 22 22 H 1.48493 * 109.47258 * 328.40876 * 19 17 15 23 23 C 1.47345 * 117.24785 * 42.94765 * 14 13 12 24 24 C 1.49977 * 117.69654 * 274.73961 * 11 10 9 25 25 N 1.47047 * 103.86293 * 359.97438 * 4 3 2 26 26 C 1.33944 * 109.18047 * 0.02562 * 25 4 3 27 27 O 1.21588 * 123.04092 * 180.26257 * 26 25 4 28 28 H 1.08997 * 109.47118 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47215 * 299.97534 * 1 2 3 30 30 H 1.09006 * 109.46532 * 59.97815 * 1 2 3 31 31 H 1.09004 * 110.55075 * 298.59855 * 3 2 1 32 32 H 1.08996 * 110.54892 * 61.40263 * 3 2 1 33 33 H 0.97001 * 120.00225 * 359.97438 * 8 6 4 34 34 H 1.09000 * 109.46918 * 299.99969 * 9 8 6 35 35 H 1.09000 * 109.47333 * 59.99802 * 9 8 6 36 36 H 1.09000 * 109.47032 * 299.99778 * 10 9 8 37 37 H 1.09000 * 109.47209 * 59.99605 * 10 9 8 38 38 H 1.07994 * 118.17855 * 0.88289 * 12 11 10 39 39 H 1.08998 * 109.52684 * 108.92817 * 13 12 11 40 40 H 1.08997 * 109.52338 * 229.05817 * 13 12 11 41 41 H 0.97004 * 119.99542 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.77507 * 57.80986 * 23 14 13 43 43 H 1.08992 * 109.77736 * 178.56099 * 23 14 13 44 44 H 1.08997 * 109.31323 * 281.29097 * 24 11 10 45 45 H 1.08999 * 109.30688 * 40.71315 * 24 11 10 46 46 H 0.97004 * 125.41053 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1984 0.0000 4 6 3.7504 0.6323 0.0007 5 1 4.2869 0.9481 -0.8941 6 6 4.4900 1.0666 1.2399 7 8 4.6015 0.3054 2.1775 8 7 5.0276 2.3006 1.3062 9 6 5.7470 2.7225 2.5106 10 6 6.2524 4.1551 2.3273 11 6 6.9918 4.5892 3.5665 12 6 8.2790 4.4514 3.5784 13 6 9.1457 4.8226 4.7491 14 7 8.3461 5.5845 5.7193 15 6 8.8452 6.7019 6.3337 16 1 8.1717 7.4569 6.7113 17 6 10.2170 6.8642 6.4709 18 7 10.7200 8.0620 6.6823 19 14 11.3489 5.3828 6.3554 20 1 11.7332 5.1627 4.9380 21 1 12.5686 5.6273 7.1665 22 1 10.6451 4.1807 6.8699 23 6 6.9851 5.0963 6.0032 24 6 6.1854 5.1560 4.6969 25 7 3.5537 -0.8249 0.0016 26 6 2.2411 -1.0918 0.0010 27 8 1.7945 -2.2227 0.0062 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5134 0.8902 30 1 -0.3632 0.5142 -0.8899 31 1 2.1407 1.7934 -0.8961 32 1 2.1407 1.7933 0.8961 33 1 4.9389 2.9093 0.5561 34 1 5.0753 2.6815 3.3680 35 1 6.5935 2.0571 2.6800 36 1 6.9240 4.1965 1.4698 37 1 5.4056 4.8202 2.1581 38 1 8.7568 4.0477 2.6980 39 1 9.5265 3.9174 5.2220 40 1 9.9809 5.4327 4.4051 41 1 11.6785 8.1754 6.7785 42 1 7.0298 4.0695 6.3661 43 1 6.5141 5.7321 6.7527 44 1 5.9298 6.1918 4.4734 45 1 5.2684 4.5779 4.8107 46 1 4.2620 -1.4877 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160861640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:52 Heat of formation + Delta-G solvation = -0.419530 kcal Electronic energy + Delta-G solvation = -26740.677451 eV Core-core repulsion = 22860.150328 eV Total energy + Delta-G solvation = -3880.527124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.78412 -39.69775 -38.26923 -36.64531 -35.75603 -34.52421 -33.78962 -31.71630 -30.45801 -30.26540 -28.90821 -27.60379 -25.54465 -24.22361 -23.49181 -22.60199 -21.22243 -20.99930 -20.88625 -18.29535 -18.10652 -17.80902 -16.89395 -16.51076 -15.96552 -15.83127 -15.68452 -15.42785 -14.78089 -14.60162 -14.42395 -14.33960 -14.00069 -13.93591 -13.90513 -13.65045 -13.11677 -12.87902 -12.76878 -12.52618 -12.43020 -12.34396 -11.90699 -11.73947 -11.45782 -11.30905 -10.79997 -10.72574 -10.56967 -10.35020 -10.23061 -9.86934 -9.66349 -9.50371 -9.43162 -9.09643 -8.67333 -8.33864 -7.03294 -5.96051 -3.30879 1.93890 2.20374 2.40555 2.65905 2.89915 3.29353 3.42000 3.47052 3.48988 3.70516 4.08970 4.23140 4.51100 4.52273 4.74709 4.84173 4.87381 4.88504 4.95886 5.05070 5.08167 5.26101 5.34790 5.40798 5.42298 5.53628 5.74323 5.81423 5.89759 5.96685 6.05688 6.14239 6.16635 6.19962 6.38860 6.47090 6.57254 6.63725 6.74803 6.96085 7.02661 7.08152 7.39864 7.75080 7.89274 8.16366 8.30383 8.89408 9.69547 10.08611 11.20139 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.033290 B = 0.002081 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.892435 B =13451.549801 C =13776.377134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.637 5.637 3 C 0.106 3.894 4 C 0.104 3.896 5 H 0.118 0.882 6 C 0.498 3.502 7 O -0.518 6.518 8 N -0.724 5.724 9 C 0.123 3.877 10 C -0.093 4.093 11 C -0.125 4.125 12 C -0.148 4.148 13 C 0.145 3.855 14 N -0.607 5.607 15 C -0.254 4.254 16 H 0.088 0.912 17 C 0.020 3.980 18 N -0.910 5.910 19 Si 0.884 3.116 20 H -0.287 1.287 21 H -0.303 1.303 22 H -0.273 1.273 23 C 0.145 3.855 24 C -0.095 4.095 25 N -0.715 5.715 26 C 0.705 3.295 27 O -0.581 6.581 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.402 0.598 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.036 0.964 40 H 0.082 0.918 41 H 0.263 0.737 42 H 0.028 0.972 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.523 -10.919 -18.574 27.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.377 5.377 3 C -0.018 4.018 4 C -0.007 4.007 5 H 0.136 0.864 6 C 0.281 3.719 7 O -0.393 6.393 8 N -0.376 5.376 9 C 0.000 4.000 10 C -0.131 4.131 11 C -0.126 4.126 12 C -0.167 4.167 13 C 0.020 3.980 14 N -0.332 5.332 15 C -0.382 4.382 16 H 0.105 0.895 17 C -0.179 4.179 18 N -0.553 5.553 19 Si 0.715 3.285 20 H -0.215 1.215 21 H -0.231 1.231 22 H -0.198 1.198 23 C 0.019 3.981 24 C -0.134 4.134 25 N -0.376 5.376 26 C 0.405 3.595 27 O -0.459 6.459 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.236 0.764 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.054 0.946 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -17.718 -11.936 -17.807 27.811 hybrid contribution 1.257 -0.494 -0.458 1.426 sum -16.460 -12.429 -18.265 27.551 Atomic orbital electron populations 1.21450 0.75183 1.04217 1.01505 1.46994 1.06537 1.05485 1.78676 1.22272 0.86153 0.89205 1.04191 1.21844 0.97262 0.83617 0.97942 0.86448 1.20739 0.79787 0.82280 0.89104 1.90792 1.57987 1.52599 1.37893 1.46069 1.56377 1.15131 1.20066 1.21481 0.96390 0.95504 0.86607 1.20928 1.00361 0.94394 0.97438 1.20307 0.94577 1.01990 0.95677 1.22645 0.95373 0.99378 0.99341 1.20306 0.94185 0.95369 0.88129 1.44446 1.12315 1.30521 1.45874 1.18898 0.91386 0.94825 1.33101 0.89461 1.25225 0.96737 0.96418 0.99489 1.69831 1.12323 1.20542 1.52630 0.87009 0.80269 0.84457 0.76797 1.21509 1.23118 1.19816 1.21032 0.85790 0.97310 0.93945 1.20824 0.97149 1.00127 0.95288 1.44827 1.07036 1.06080 1.79699 1.15814 0.81670 0.84691 0.77337 1.90974 1.75737 1.20885 1.58255 0.89407 0.91914 0.91870 0.88590 0.89479 0.76424 0.90985 0.91106 0.91166 0.90912 0.88427 0.94622 0.90030 0.92764 0.95368 0.91527 0.91155 0.92352 0.72250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.67 11.21 59.85 0.67 1.34 16 2 N -0.64 -5.06 3.36 -186.74 -0.63 -5.69 16 3 C 0.11 0.49 7.32 -3.17 -0.02 0.47 16 4 C 0.10 0.59 4.17 -68.21 -0.28 0.31 16 5 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 6 C 0.50 4.37 6.95 -10.98 -0.08 4.29 16 7 O -0.52 -7.30 16.56 5.56 0.09 -7.20 16 8 N -0.72 -4.93 5.56 -60.29 -0.33 -5.27 16 9 C 0.12 1.21 5.66 -4.04 -0.02 1.19 16 10 C -0.09 -0.93 5.32 -27.88 -0.15 -1.08 16 11 C -0.12 -1.84 5.11 -100.99 -0.52 -2.36 16 12 C -0.15 -2.51 9.47 -35.78 -0.34 -2.85 16 13 C 0.14 3.13 4.39 -5.10 -0.02 3.11 16 14 N -0.61 -14.33 2.80 -173.56 -0.49 -14.82 16 15 C -0.25 -7.05 10.14 -15.06 -0.15 -7.20 16 16 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 17 C 0.02 0.57 5.26 -17.43 -0.09 0.48 16 18 N -0.91 -27.73 13.97 55.49 0.78 -26.95 16 19 Si 0.88 22.25 24.17 -169.99 -4.11 18.14 16 20 H -0.29 -6.89 6.48 56.52 0.37 -6.52 16 21 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 22 H -0.27 -6.79 6.59 56.52 0.37 -6.42 16 23 C 0.15 2.79 6.59 -3.43 -0.02 2.77 16 24 C -0.10 -1.48 5.95 -28.09 -0.17 -1.64 16 25 N -0.71 -6.30 5.60 -59.33 -0.33 -6.63 16 26 C 0.70 8.00 8.60 -88.40 -0.76 7.24 16 27 O -0.58 -8.99 17.29 5.29 0.09 -8.90 16 28 H 0.09 0.62 7.52 -51.93 -0.39 0.23 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.10 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.09 0.39 7.72 -51.93 -0.40 -0.01 16 33 H 0.40 1.31 8.47 -40.82 -0.35 0.97 16 34 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.63 7.78 -51.93 -0.40 0.22 16 37 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 38 H 0.10 1.41 7.73 -52.49 -0.41 1.01 16 39 H 0.04 0.79 6.39 -51.93 -0.33 0.46 16 40 H 0.08 1.92 5.05 -51.93 -0.26 1.66 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 1.26 7.96 -51.93 -0.41 0.85 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 46 H 0.43 3.58 8.96 -40.82 -0.37 3.21 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -38.19 370.91 -8.46 -46.65 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -7.17 Total: -0.98 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -1.96 Total: 6.06 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -1.01 Total: -59.36 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.18 Total: -16.10 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.11 Total: 18.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.19 -8.46 -46.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160861640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.228 kcal (2) G-P(sol) polarization free energy of solvation -38.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds