Wall clock time and date at job start Fri Apr 10 2020 18:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.47045 * 125.41435 * 2 1 4 4 C 1.54103 * 103.86312 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.54890 * 118.74597 * 4 3 2 6 6 C 1.50704 * 110.54518 * 241.40506 * 4 3 2 7 7 O 1.21279 * 119.99860 * 100.00567 * 6 4 3 8 8 N 1.34773 * 120.00203 * 279.99955 * 6 4 3 9 9 C 1.46498 * 120.00028 * 180.02562 * 8 6 4 10 10 C 1.53008 * 109.47258 * 180.02562 * 9 8 6 11 11 C 1.50693 * 109.47255 * 179.97438 * 10 9 8 12 12 C 1.29457 * 117.69428 * 94.99650 * 11 10 9 13 13 C 1.50323 * 123.65098 * 180.85773 * 12 11 10 14 14 N 1.47013 * 109.16680 * 349.02384 * 13 12 11 15 15 C 1.36938 * 121.37875 * 222.96617 * 14 13 12 16 16 H 1.07993 * 120.00138 * 155.35119 * 15 14 13 17 17 C 1.38814 * 119.99697 * 335.35783 * 15 14 13 18 18 N 1.31623 * 119.99598 * 159.82066 * 17 15 14 19 19 Si 1.86797 * 119.99974 * 339.81878 * 17 15 14 20 20 H 1.48497 * 109.47223 * 88.41246 * 19 17 15 21 21 H 1.48500 * 109.47133 * 208.40879 * 19 17 15 22 22 H 1.48493 * 109.47258 * 328.40876 * 19 17 15 23 23 C 1.47345 * 117.24785 * 42.94765 * 14 13 12 24 24 C 1.49977 * 117.69654 * 274.73961 * 11 10 9 25 25 N 1.47047 * 103.86293 * 359.97438 * 4 3 2 26 26 C 1.33944 * 109.18047 * 0.02562 * 25 4 3 27 27 O 1.21588 * 123.04092 * 180.26257 * 26 25 4 28 28 H 1.08997 * 109.47118 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47215 * 299.97534 * 1 2 3 30 30 H 1.09006 * 109.46532 * 59.97815 * 1 2 3 31 31 H 1.09004 * 110.55075 * 298.59855 * 3 2 1 32 32 H 1.08996 * 110.54892 * 61.40263 * 3 2 1 33 33 H 0.97001 * 120.00225 * 359.97438 * 8 6 4 34 34 H 1.09000 * 109.46918 * 299.99969 * 9 8 6 35 35 H 1.09000 * 109.47333 * 59.99802 * 9 8 6 36 36 H 1.09000 * 109.47032 * 299.99778 * 10 9 8 37 37 H 1.09000 * 109.47209 * 59.99605 * 10 9 8 38 38 H 1.07994 * 118.17855 * 0.88289 * 12 11 10 39 39 H 1.08998 * 109.52684 * 108.92817 * 13 12 11 40 40 H 1.08997 * 109.52338 * 229.05817 * 13 12 11 41 41 H 0.97004 * 119.99542 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.77507 * 57.80986 * 23 14 13 43 43 H 1.08992 * 109.77736 * 178.56099 * 23 14 13 44 44 H 1.08997 * 109.31323 * 281.29097 * 24 11 10 45 45 H 1.08999 * 109.30688 * 40.71315 * 24 11 10 46 46 H 0.97004 * 125.41053 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1984 0.0000 4 6 3.7504 0.6323 0.0007 5 1 4.2869 0.9481 -0.8941 6 6 4.4900 1.0666 1.2399 7 8 4.6015 0.3054 2.1775 8 7 5.0276 2.3006 1.3062 9 6 5.7470 2.7225 2.5106 10 6 6.2524 4.1551 2.3273 11 6 6.9918 4.5892 3.5665 12 6 8.2790 4.4514 3.5784 13 6 9.1457 4.8226 4.7491 14 7 8.3461 5.5845 5.7193 15 6 8.8452 6.7019 6.3337 16 1 8.1717 7.4569 6.7113 17 6 10.2170 6.8642 6.4709 18 7 10.7200 8.0620 6.6823 19 14 11.3489 5.3828 6.3554 20 1 11.7332 5.1627 4.9380 21 1 12.5686 5.6273 7.1665 22 1 10.6451 4.1807 6.8699 23 6 6.9851 5.0963 6.0032 24 6 6.1854 5.1560 4.6969 25 7 3.5537 -0.8249 0.0016 26 6 2.2411 -1.0918 0.0010 27 8 1.7945 -2.2227 0.0062 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5134 0.8902 30 1 -0.3632 0.5142 -0.8899 31 1 2.1407 1.7934 -0.8961 32 1 2.1407 1.7933 0.8961 33 1 4.9389 2.9093 0.5561 34 1 5.0753 2.6815 3.3680 35 1 6.5935 2.0571 2.6800 36 1 6.9240 4.1965 1.4698 37 1 5.4056 4.8202 2.1581 38 1 8.7568 4.0477 2.6980 39 1 9.5265 3.9174 5.2220 40 1 9.9809 5.4327 4.4051 41 1 11.6785 8.1754 6.7785 42 1 7.0298 4.0695 6.3661 43 1 6.5141 5.7321 6.7527 44 1 5.9298 6.1918 4.4734 45 1 5.2684 4.5779 4.8107 46 1 4.2620 -1.4877 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160861640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:51 Heat of formation + Delta-G solvation = -31.900129 kcal Electronic energy + Delta-G solvation = -26742.042553 eV Core-core repulsion = 22860.150328 eV Total energy + Delta-G solvation = -3881.892225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.40983 -40.46783 -39.64042 -37.46807 -36.80674 -35.17400 -35.07842 -33.51035 -31.89611 -31.20704 -29.82749 -28.20496 -26.95053 -25.19702 -24.82460 -23.68272 -22.56499 -21.70573 -21.60363 -19.63741 -18.93833 -18.65824 -17.72744 -17.50683 -17.37456 -16.93166 -16.49677 -16.43105 -16.03603 -15.62844 -15.39431 -15.35679 -15.14896 -15.08474 -14.76736 -14.50525 -14.31187 -14.24023 -13.72164 -13.53167 -13.40802 -13.21043 -13.05267 -12.94908 -12.77187 -12.63517 -12.30480 -12.12571 -11.97027 -11.58244 -11.51456 -11.43434 -11.27194 -10.73125 -10.42649 -10.13702 -9.64722 -9.57277 -8.98128 -8.17340 -5.47814 1.26585 1.30782 1.36102 1.39535 1.47753 1.61357 1.86004 2.19455 2.39883 2.92268 3.05089 3.28092 3.31984 3.56350 3.90470 3.92817 4.05477 4.12195 4.15103 4.29265 4.44026 4.50377 4.50889 4.57441 4.61566 4.66034 4.71101 4.73672 4.85419 4.87677 4.94669 4.97413 5.00220 5.08519 5.18616 5.33960 5.39743 5.61409 5.74510 5.84163 6.00016 6.07360 6.20348 6.33387 6.53573 6.87561 7.19048 7.42277 7.59801 8.03139 9.02581 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.033290 B = 0.002081 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.892435 B =13451.549801 C =13776.377134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.638 5.638 3 C 0.105 3.895 4 C 0.109 3.891 5 H 0.167 0.833 6 C 0.499 3.501 7 O -0.579 6.579 8 N -0.702 5.702 9 C 0.131 3.869 10 C -0.080 4.080 11 C -0.108 4.108 12 C -0.177 4.177 13 C 0.141 3.859 14 N -0.624 5.624 15 C -0.242 4.242 16 H 0.057 0.943 17 C -0.039 4.039 18 N -0.957 5.957 19 Si 0.947 3.053 20 H -0.269 1.269 21 H -0.311 1.311 22 H -0.271 1.271 23 C 0.135 3.865 24 C -0.092 4.092 25 N -0.717 5.717 26 C 0.689 3.311 27 O -0.638 6.638 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.424 0.576 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.030 0.970 40 H 0.057 0.943 41 H 0.261 0.739 42 H 0.035 0.965 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.012 -10.963 -21.693 30.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.377 5.377 3 C -0.018 4.018 4 C 0.000 4.000 5 H 0.184 0.816 6 C 0.283 3.717 7 O -0.458 6.458 8 N -0.356 5.356 9 C 0.006 3.994 10 C -0.117 4.117 11 C -0.109 4.109 12 C -0.196 4.196 13 C 0.016 3.984 14 N -0.349 5.349 15 C -0.372 4.372 16 H 0.074 0.926 17 C -0.233 4.233 18 N -0.604 5.604 19 Si 0.776 3.224 20 H -0.195 1.195 21 H -0.239 1.239 22 H -0.196 1.196 23 C 0.011 3.989 24 C -0.130 4.130 25 N -0.377 5.377 26 C 0.389 3.611 27 O -0.520 6.520 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.161 0.839 32 H 0.110 0.890 33 H 0.263 0.737 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.144 0.856 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.111 0.889 46 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -19.237 -11.927 -20.988 30.867 hybrid contribution 1.580 -0.407 0.575 1.730 sum -17.656 -12.334 -20.413 29.674 Atomic orbital electron populations 1.21620 0.74204 1.03409 1.03596 1.47204 1.07350 1.05674 1.77443 1.22638 0.84386 0.88085 1.06697 1.22178 0.98318 0.81619 0.97897 0.81612 1.21310 0.79142 0.81972 0.89251 1.90782 1.60361 1.54367 1.40255 1.45793 1.54988 1.14954 1.19837 1.21190 0.95690 0.95035 0.87443 1.20834 1.01081 0.94452 0.95359 1.20668 0.94205 0.99109 0.96935 1.22494 0.95863 1.02419 0.98797 1.20255 0.94480 0.94171 0.89464 1.44606 1.14001 1.29841 1.46460 1.18860 0.91023 0.95356 1.31957 0.92570 1.25837 0.98355 0.98652 1.00454 1.69956 1.12515 1.22509 1.55403 0.85981 0.77861 0.81004 0.77559 1.19506 1.23946 1.19577 1.21269 0.84182 0.97191 0.96303 1.20777 0.97942 1.00862 0.93410 1.44901 1.06218 1.07802 1.78796 1.16217 0.82656 0.84776 0.77427 1.90916 1.76877 1.23314 1.60875 0.91741 0.90633 0.88861 0.83932 0.89037 0.73744 0.92346 0.93087 0.89071 0.88315 0.85551 0.95273 0.92509 0.92964 0.94675 0.92200 0.91341 0.88872 0.72453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.05 11.21 127.77 1.43 2.49 16 2 N -0.64 -8.64 3.36 -863.45 -2.90 -11.53 16 3 C 0.10 0.48 7.32 86.65 0.63 1.12 16 4 C 0.11 0.81 4.17 44.52 0.19 0.99 16 5 H 0.17 -0.31 8.14 -2.39 -0.02 -0.33 16 6 C 0.50 7.15 6.95 87.66 0.61 7.76 16 7 O -0.58 -15.60 16.56 -3.02 -0.05 -15.65 16 8 N -0.70 -6.31 5.56 -463.05 -2.57 -8.89 16 9 C 0.13 2.07 5.66 86.38 0.49 2.55 16 10 C -0.08 -1.17 5.32 29.85 0.16 -1.01 16 11 C -0.11 -2.82 5.11 -15.14 -0.08 -2.90 16 12 C -0.18 -5.55 9.47 27.10 0.26 -5.29 16 13 C 0.14 5.96 4.39 85.42 0.37 6.33 16 14 N -0.62 -29.45 2.80 -703.03 -1.97 -31.42 16 15 C -0.24 -13.82 10.14 84.03 0.85 -12.96 16 16 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 17 C -0.04 -2.27 5.26 84.86 0.45 -1.82 16 18 N -0.96 -60.28 13.97 21.65 0.30 -59.98 16 19 Si 0.95 47.07 24.17 68.60 1.66 48.73 16 20 H -0.27 -12.41 6.48 99.48 0.64 -11.76 16 21 H -0.31 -15.67 7.11 99.48 0.71 -14.97 16 22 H -0.27 -13.15 6.59 99.48 0.66 -12.50 16 23 C 0.14 5.08 6.59 86.31 0.57 5.65 16 24 C -0.09 -2.58 5.95 29.72 0.18 -2.40 16 25 N -0.72 -11.55 5.60 -460.35 -2.58 -14.13 16 26 C 0.69 15.18 8.60 179.57 1.55 16.73 16 27 O -0.64 -20.45 17.29 -3.99 -0.07 -20.52 16 28 H 0.06 0.92 7.52 -2.39 -0.02 0.90 16 29 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.14 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.09 0.40 7.72 -2.39 -0.02 0.38 16 33 H 0.42 0.11 8.47 -92.71 -0.79 -0.67 16 34 H 0.06 1.12 8.11 -2.39 -0.02 1.10 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 1.07 7.78 -2.39 -0.02 1.05 16 37 H 0.10 1.05 8.11 -2.39 -0.02 1.03 16 38 H 0.13 3.21 7.73 -2.91 -0.02 3.19 16 39 H 0.03 1.27 6.39 -2.39 -0.02 1.25 16 40 H 0.06 2.65 5.05 -2.39 -0.01 2.64 16 41 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.06 2.27 7.96 -2.39 -0.02 2.25 16 44 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.09 2.03 8.10 -2.39 -0.02 2.01 16 46 H 0.43 6.90 8.96 -92.71 -0.83 6.07 16 Total: -1.00 -90.49 370.91 -1.25 -91.74 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -0.72 Total: 4.43 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 7.65 Total: 17.22 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -9.72 Total: -125.95 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.12 Total: -36.17 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.66 Total: 48.73 kcal Total: -90.49 -1.25 -91.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160861640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.840 kcal (2) G-P(sol) polarization free energy of solvation -90.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds